Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
296579829Arachis_ipaensisESTVector
296578556Arachis_ipaensisESTVector
296584517Arachis_ipaensisESTVector
296592476Arachis_ipaensisESTVector
296596820Arachis_ipaensisESTVector
296600435Arachis_ipaensisESTVector
296604887Arachis_ipaensisESTVector

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