Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
296546262Arachis_duranensisESTBacteria
296551857Arachis_duranensisESTBacteria
296552931Arachis_duranensisESTBacteria
296546691Arachis_duranensisESTBacteria
296546910Arachis_duranensisESTBacteria
296549787Arachis_duranensisESTBacteria
296554694Arachis_duranensisESTBacteria
296556773Arachis_duranensisESTBacteria

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