Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
107953668Arabidopsis_halleri_subsp__halleriESTVector
107953724Arabidopsis_halleri_subsp__halleriESTVector
107953726Arabidopsis_halleri_subsp__halleriESTVector
107953755Arabidopsis_halleri_subsp__halleriESTVector
107953760Arabidopsis_halleri_subsp__halleriESTVector
107953775Arabidopsis_halleri_subsp__halleriESTVector
107953777Arabidopsis_halleri_subsp__halleriESTVector
107953850Arabidopsis_halleri_subsp__halleriESTVector

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