Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
90404448Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404453Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404460Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404463Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404478Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404481Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404482Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404485Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404486Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404497Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404499Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404522Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404571Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404581Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404588Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404612Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404613Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404667Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404685Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404702Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404706Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404766Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404821Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404857Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404866Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404884Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404893Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404903Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404905Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404913Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404915Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404981Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404993Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90404997Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90405011Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90405016Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90405048Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90405066Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90405078Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90405144Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90405151Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90405166Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90405168Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90405303Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90405520Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector
90406408Arabidopsis_arenosa_x_Arabidopsis_thalianaESTVector

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