Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
71695286Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria
71715635Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria
71716152Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria
71683586Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria
71686088Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria
74529474Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria
74529475Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria
74538711Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria
74545379Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria
74547000Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria
74563042Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria
75452331Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria
75453421Aquilegia_formosa_x_Aquilegia_pubescensESTBacteria

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!