Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)



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Sequence ID Organism Sequence Type Contamination Type
255779129Ambrosia_trifidaESTVector
255779132Ambrosia_trifidaESTVector
255779140Ambrosia_trifidaESTVector
255779147Ambrosia_trifidaESTVector
255779148Ambrosia_trifidaESTVector
255779167Ambrosia_trifidaESTVector
255779173Ambrosia_trifidaESTVector
255779176Ambrosia_trifidaESTVector
255779177Ambrosia_trifidaESTVector
255779178Ambrosia_trifidaESTVector
255779180Ambrosia_trifidaESTVector
255779184Ambrosia_trifidaESTVector
255779186Ambrosia_trifidaESTVector
255779197Ambrosia_trifidaESTVector
255779214Ambrosia_trifidaESTVector
255779219Ambrosia_trifidaESTVector
255779221Ambrosia_trifidaESTVector
255779232Ambrosia_trifidaESTVector
255779236Ambrosia_trifidaESTVector
255779237Ambrosia_trifidaESTVector
255779242Ambrosia_trifidaESTVector
255779243Ambrosia_trifidaESTVector
255779247Ambrosia_trifidaESTVector
255779256Ambrosia_trifidaESTVector
255779258Ambrosia_trifidaESTVector
255779265Ambrosia_trifidaESTVector
255779268Ambrosia_trifidaESTVector
255779284Ambrosia_trifidaESTVector
255779287Ambrosia_trifidaESTVector
255779300Ambrosia_trifidaESTVector
255779301Ambrosia_trifidaESTVector
255779305Ambrosia_trifidaESTVector
255779309Ambrosia_trifidaESTVector
255779316Ambrosia_trifidaESTVector
255779317Ambrosia_trifidaESTVector
255779318Ambrosia_trifidaESTVector
154183305Ambrosia_trifidaESTVector
190607140Ambrosia_trifidaESTVector
190607018Ambrosia_trifidaESTVector
190607019Ambrosia_trifidaESTVector
190607020Ambrosia_trifidaESTVector
190607021Ambrosia_trifidaESTVector
190607022Ambrosia_trifidaESTVector
190607024Ambrosia_trifidaESTVector
190607027Ambrosia_trifidaESTVector
190607028Ambrosia_trifidaESTVector
190607034Ambrosia_trifidaESTVector
190607044Ambrosia_trifidaESTVector
190607053Ambrosia_trifidaESTVector
190607070Ambrosia_trifidaESTVector
190607075Ambrosia_trifidaESTVector
190607077Ambrosia_trifidaESTVector
190607078Ambrosia_trifidaESTVector
190607081Ambrosia_trifidaESTVector
190607083Ambrosia_trifidaESTVector
190607084Ambrosia_trifidaESTVector
190607087Ambrosia_trifidaESTVector
190607091Ambrosia_trifidaESTVector
190607097Ambrosia_trifidaESTVector
190607103Ambrosia_trifidaESTVector
190607107Ambrosia_trifidaESTVector
190607108Ambrosia_trifidaESTVector
190607113Ambrosia_trifidaESTVector
190607118Ambrosia_trifidaESTVector
190607123Ambrosia_trifidaESTVector
190607126Ambrosia_trifidaESTVector
343176791Ambrosia_trifidaESTVector
343176795Ambrosia_trifidaESTVector
343176805Ambrosia_trifidaESTVector
343176813Ambrosia_trifidaESTVector
343176814Ambrosia_trifidaESTVector
343176816Ambrosia_trifidaESTVector
343176821Ambrosia_trifidaESTVector
343176822Ambrosia_trifidaESTVector
343176825Ambrosia_trifidaESTVector
343176832Ambrosia_trifidaESTVector
343176836Ambrosia_trifidaESTVector
343176848Ambrosia_trifidaESTVector
343176853Ambrosia_trifidaESTVector
343176856Ambrosia_trifidaESTVector
343176862Ambrosia_trifidaESTVector
343176866Ambrosia_trifidaESTVector
343176871Ambrosia_trifidaESTVector
296281731Ambrosia_trifidaESTVector
296281738Ambrosia_trifidaESTVector
296281742Ambrosia_trifidaESTVector
296281743Ambrosia_trifidaESTVector
296281745Ambrosia_trifidaESTVector
296281758Ambrosia_trifidaESTVector
296281761Ambrosia_trifidaESTVector
296281767Ambrosia_trifidaESTVector
296281775Ambrosia_trifidaESTVector
296281779Ambrosia_trifidaESTVector
296281808Ambrosia_trifidaESTVector
296281809Ambrosia_trifidaESTVector
296281810Ambrosia_trifidaESTVector
296281816Ambrosia_trifidaESTVector
296281818Ambrosia_trifidaESTVector
296281827Ambrosia_trifidaESTVector
296281832Ambrosia_trifidaESTVector

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