Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
259012357Alstroemeria_peruvianaESTVector
259012377Alstroemeria_peruvianaESTVector
325672272Alstroemeria_peruvianaESTVector
325672292Alstroemeria_peruvianaESTVector
35200558Alstroemeria_peruvianaESTVector
35200573Alstroemeria_peruvianaESTVector
35200589Alstroemeria_peruvianaESTVector
35510956Alstroemeria_peruvianaESTVector

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