Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
18031532Allium_cepaESTVector
18030791Allium_cepaESTVector
18030969Allium_cepaESTVector
14495426Allium_cepaESTVector
14495504Allium_cepaESTVector
14495522Allium_cepaESTVector
14495524Allium_cepaESTVector
22040285Allium_cepaESTVector
22040300Allium_cepaESTVector
22040318Allium_cepaESTVector
22040334Allium_cepaESTVector
22040342Allium_cepaESTVector
22040354Allium_cepaESTVector
22040384Allium_cepaESTVector
22040385Allium_cepaESTVector
22040400Allium_cepaESTVector
22040437Allium_cepaESTVector
22040438Allium_cepaESTVector
22040465Allium_cepaESTVector
22040481Allium_cepaESTVector
22040484Allium_cepaESTVector
22040492Allium_cepaESTVector
22040517Allium_cepaESTVector
22040525Allium_cepaESTVector
22040531Allium_cepaESTVector
22040576Allium_cepaESTVector
22040593Allium_cepaESTVector
22040605Allium_cepaESTVector
22040651Allium_cepaESTVector
22040663Allium_cepaESTVector
22040667Allium_cepaESTVector
22040670Allium_cepaESTVector
22040712Allium_cepaESTVector
22040719Allium_cepaESTVector
18031489Allium_cepaESTVector
34460630Allium_cepaESTVector
34460694Allium_cepaESTVector
34463188Allium_cepaESTVector
34463798Allium_cepaESTVector
34463917Allium_cepaESTVector
34467029Allium_cepaESTVector
34471831Allium_cepaESTVector
34472030Allium_cepaESTVector
34472455Allium_cepaESTVector
34473928Allium_cepaESTVector
34473937Allium_cepaESTVector
34474883Allium_cepaESTVector
146331271Allium_cepaESTVector
146331325Allium_cepaESTVector

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