Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
169247351Agrostis_stolonifera_var__palustrisESTVector
169247370Agrostis_stolonifera_var__palustrisESTVector
169247371Agrostis_stolonifera_var__palustrisESTVector
169247372Agrostis_stolonifera_var__palustrisESTVector
169247375Agrostis_stolonifera_var__palustrisESTVector
169247378Agrostis_stolonifera_var__palustrisESTVector
169247379Agrostis_stolonifera_var__palustrisESTVector
169247380Agrostis_stolonifera_var__palustrisESTVector
169247384Agrostis_stolonifera_var__palustrisESTVector
169247387Agrostis_stolonifera_var__palustrisESTVector
169247390Agrostis_stolonifera_var__palustrisESTVector
169247393Agrostis_stolonifera_var__palustrisESTVector
169247399Agrostis_stolonifera_var__palustrisESTVector
169247400Agrostis_stolonifera_var__palustrisESTVector
169247404Agrostis_stolonifera_var__palustrisESTVector
169247408Agrostis_stolonifera_var__palustrisESTVector
169247414Agrostis_stolonifera_var__palustrisESTVector

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