Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
82768045Agrostis_stoloniferaESTBacteria
82768894Agrostis_stoloniferaESTBacteria
82769086Agrostis_stoloniferaESTBacteria
82769243Agrostis_stoloniferaESTBacteria
82769974Agrostis_stoloniferaESTBacteria
82770452Agrostis_stoloniferaESTBacteria
239777768Agrostis_stoloniferaESTBacteria
239777841Agrostis_stoloniferaESTBacteria
239778139Agrostis_stoloniferaESTBacteria
239778274Agrostis_stoloniferaESTBacteria
239778328Agrostis_stoloniferaESTBacteria
239775913Agrostis_stoloniferaESTBacteria
239779883Agrostis_stoloniferaESTBacteria
88867891Agrostis_stoloniferaESTBacteria
88868012Agrostis_stoloniferaESTBacteria

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