Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
195250528Actinidia_hemsleyanaESTVector
195299728Actinidia_hemsleyanaESTVector
195245790Actinidia_hemsleyanaESTVector
195203434Actinidia_hemsleyanaESTVector
195289975Actinidia_hemsleyanaESTVector
195268647Actinidia_hemsleyanaESTVector
195293589Actinidia_hemsleyanaESTVector
195227169Actinidia_hemsleyanaESTVector
195226911Actinidia_hemsleyanaESTVector
195203771Actinidia_hemsleyanaESTVector
195298260Actinidia_hemsleyanaESTVector
195315000Actinidia_hemsleyanaESTVector
195231034Actinidia_hemsleyanaESTVector

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