Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
293573560Acacia_mangiumESTVector
40839783Acacia_mangiumESTVector
40839788Acacia_mangiumESTVector
40839797Acacia_mangiumESTVector
40839808Acacia_mangiumESTVector

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