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Maize Annotation Projects   ?  [Loci/Annotations Page]  Atom Feed Subscribe

Projects are informal gene categories intended as an aid to annotators.
This page lists projects assigned by PlantGDB staff to version 5b.60 loci and their yrGATE annotations in progress (submitted or approved). Click a number in columns 4 - 7 to view entries.
Please contact us if you have a list of genes/loci you'd like assigned to a Project (either new or existing).

Project Name
Description Source Total
Loci*
Low
Quality
Loci* ?
Loci
with
annota-
tions*
Annotations in CommunityCentral ?
Total conf ext impr var new del notres edit
chromatin related genes loci identified by blastp 1e-5 homology to plant chromatin-related proteins in ChromDB (a preliminary list) http://www.chromdb.org 385 17 8 10 4 3 1 0 0 2 0 0
classical maize genes maize loci putatively associated with studied maize genes (locus table at MaizeGDB), based on blastp similarity http://synteny.cnr.berkeley.edu/wiki/index.php/Classical_Maize_Genes 465 27 31 43 12 8 6 2 1 8 6 3
Ds insertions Loci within 1 kb of a predicted Ds or Ac transposon insertion http://www.plantgdb.org/prj/AcDsTagging/ 1249 78 34 43 12 10 10 2 0 7 2 5
gene fusion gene loci flagged by GAEVAL as requiring fusion of two or more published models http://www.plantgdb.org/XGDB/phplib/GAEVAL.php?list=MWuca_Fus&GDB=Zm 1416 266 35 34 2 2 13 2 0 6 9 1
kinesin related genes loci similar to GenBank viridiplantae kinesin proteins by blastp at 1e-5 (a preliminary list) unpublished 145 7 7 15 6 1 1 1 1 4 1 0
named maize genes Named genes (GenBank, UniProt) that were computationally assigned to MaizeSequence genes. Cross-referenced with curated list of loci at MaizeGDB http://maizesequence.org/info/docs/namedgenes.html 589 26 31 21 10 6 2 0 0 2 1 0
splicing related genes maize loci related by blastp similarity to Arabidopsis splicing-related genes (a preliminary list) http://www.plantgdb.org/SRGD/ 297 13 15 19 4 2 8 0 0 2 3 2
starch pathway genes based on locus description includes starch or amylo, or blastp similarity to translations from starch gene list compiled by Alan Myers (preliminary dataset) unpublished 34 2 5 9 2 1 4 2 0 0 0 0
genes with no project assignment If you have a list of maize genes you would like assigned to a project, please contact use using our feedback form N/A 35788 2250 22 31 7 1 12 2 0 4 5 4
TOTALS* All loci / annotations N/A 39393 2537 161 228 61 34 57 11 2 36 27 15

*NOTE that since a locus may be assigned to more than one project, the aggregate total for projects will be greater than the total for all loci/annotations.

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