• Anonymous
  • Login

Search:  Display ?

Assembly/Version:  Chr:  Start:  End: Display:

Maize Loci/Annotations  ?

No filters | 39393 records Download .csv Atom Feed Subscribe
 Pages:
# / Page:

Page:

Showing: 1 - 100 out of 39393 records
 Search: Select column, enter value, click "Go".
Find: ?

 Dataset:
 ? WGS   FGS  non-FGS
 Filters: Filters & Search are additive ("AND")
Annotation Project: ?
[view project information page]
yrGATE Status: ?
Coverage Score: ?
Integrity Score: ?
Link to this page
Locus ID
(5a.59 models)
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Ds
Dist
(kb)
?
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project ? Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
(click to view)
Annotate it!
GRMZM2G059865 1 4854
9652
4.8 8 r 3 229 filtered_set; ortholog; UniRef90: C0P8I2_MAIZE Putative uncharacterized pro... 1 0.98
GRMZM5G888250 1 9882
10387
0.5 0 r 1 228 filtered_set; other; UniRef90: No significant hits (1e-5)... 1 0.7
GRMZM2G093344 1 109519
111769
2.3 3 r 1 127 filtered_set; ortholog; UniRef90: No significant hits (1e-5)... 0.65 0.46
GRMZM2G093399 1 136307
138929
2.6 3 f 1 100 filtered_set; other; UniRef90: No significant hits (1e-5); maizesequence.or... 1 0.97
GRMZM5G809743 1 144361
144657
0.3 0 f 1 94 filtered_set; other; UniRef90: No significant hits (1e-5); maizesequence.or... gene fusion 1 0.75
GRMZM5G833153 1 144957
145646
0.7 0 f 1 93 filtered_set; other; UniRef90: No significant hits (1e-5); maizesequence.or... gene fusion 1 0.9
GRMZM2G306216 1 146265
147500
1.2 3 r 1 91 filtered_set; other; possible_pseudogene; UniRef90: No significant hits (1e... 0.86 0.46
AC177838.2_FG015 1 161143
161925
0.8 0 f 1 77 filtered_set; other; UniRef90: No significant hits (1e-5)... 0.22 0.67
GRMZM2G104572 1 234779
235890
1.1 0 f 1 3 filtered_set; other; UniRef90: No significant hits (1e-5)... 0.92 0.96
GRMZM5G822187 1 243464
243742
0.3 0 f 1 5 filtered_set; other; UniRef90: No significant hits (1e-5)... 1 0.6
GRMZM5G815900 1 257026
257371
0.3 0 f 1 18 filtered_set; other; UniRef90: No significant hits (1e-5)... 0
GRMZM2G023794 1 264626
270895
6.3 5 r 2 26 filtered_set; other; UniRef90: B6TUT6_MAIZE Putative uncharacterized protei... 0.57 0.5
GRMZM2G023863 1 272525
274767
2.2 5 f 2 34 filtered_set; ortholog; UniRef90: No significant hits (1e-5); maizesequence... 0.94 0.68
GRMZM2G137648 1 371975
375908
3.9 0 r 1 133 filtered_set; ortholog; UniRef90: NU5C_SORBI NAD(P)H-quinone oxidoreductase... 0.82 0.9
GRMZM2G137697 1 372538
374866
2.3 1 f 1 134 filtered_set; ortholog; UniRef90: No significant hits (1e-5); maizesequence... 1 0.4
GRMZM2G408834 1 379244
385788
6.5 4 f 1 141 filtered_set; other; UniRef90: No significant hits (1e-5)... 0
GRMZM2G108663 1 423621
424483
0.9 0 r 1 185 filtered_set; other; UniRef90: No significant hits (1e-5)... 1 0.99
AC204887.4_FG003 1 458334
458906
0.6 0 r 1 186 filtered_set; other; UniRef90: No significant hits (1e-5); maizesequence.or... 1 0.9
GRMZM2G471814 1 514921
516015
1.1 0 f 1 128 filtered_set; syntelog; UniRef90: C5WNP8_SORBI Putative uncharacterized pro... 0.02 0.6
GRMZM2G330436 1 515997
526846
10.8 8 r 2 126 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... 1 0.96
GRMZM2G032104 1 644608
652093
7.5 16 r 1 0 filtered_set; syntelog; possible_pseudogene; UniRef90: No significant hits ... Ds insertions 0.6 0.38
GRMZM2G333069 1 644611
645388
0.8 0 f 1 0 filtered_set; syntelog; UniRef90: B6SHN1_MAIZE Oleosin n=1 (Zea mays) Exp=5... Ds insertions 1 0.96
GRMZM2G399700 1 676952
682616
5.7 13 r 1 33 filtered_set; syntelog; UniRef90: C5WNP5_SORBI Putative uncharacterized pro... 0.22 0.21
GRMZM2G703460 1 724193
724645
0.5 0 f 1 80 filtered_set; other; UniRef90: No significant hits (1e-5)... 0
GRMZM2G474694 1 833249
837343
4.1 8 r 1 189 filtered_set; ortholog; UniRef90: No significant hits (1e-5)... 0.18 0.05
GRMZM2G172183 1 985531
993246
7.7 9 f 1 341 filtered_set; syntelog; UniRef90: C5WNP1_SORBI Putative uncharacterized pro... 1 0.95
GRMZM2G073979 1 997214
999824
2.6 3 f 3 353 filtered_set; syntelog; UniRef90: C4J2M3_MAIZE Putative uncharacterized pro... gene fusion 1 0.94
GRMZM2G374777 1 1000050
1000789
0.7 0 f 1 356 filtered_set; other; UniRef90: No significant hits (1e-5); maizesequence.or... 1 0.83
GRMZM2G374779 1 1001485
1005319
3.8 11 f 4 357 filtered_set; syntelog; UniRef90: B6TEV5_MAIZE Palmitoyl-protein thioestera... 1 0.99
GRMZM2G374812 1 1003179
1007065
3.9 3 r 3 359 filtered_set; syntelog; UniRef90: C0PIJ6_MAIZE Putative uncharacterized pro... 0.92 0.89
GRMZM2G052586 1 1036799
1042292
5.5 8 r 4 392 filtered_set; ortholog; UniRef90: Q84VR1_MAIZE 50S ribosomal protein L35 (F... 0.99 0.99
GRMZM2G483779 1 1157711
1158853
1.1 2 r 1 513 filtered_set; other; UniRef90: No significant hits (1e-5); maizesequence.or... 1 0.99
GRMZM2G002121 1 1177194
1178041
0.8 1 r 1 533 filtered_set; syntelog; possible_pseudogene; UniRef90: No significant hits ... 1 0.95
GRMZM2G026639 1 1195260
1203566
8.3 5 r 1 551 filtered_set; syntelog; UniRef90: C5WNN5_SORBI Putative uncharacterized pro... 0.98 0.99
GRMZM2G058632 1 1275521
1290031
14.5 2 r 1 631 filtered_set; other; UniRef90: No significant hits (1e-5)... 0
GRMZM2G367714 1 1501026
1507458
6.4 6 f 1 653 filtered_set; ortholog; UniRef90: B6SPG8_MAIZE ATP-dependent rRNA helicase ... 0.28 0.18
GRMZM2G097229 1 1566915
1568178
1.3 1 r 1 593 filtered_set; syntelog; UniRef90: C5WMV2_SORBI Putative uncharacterized pro... 0.89 0.94
GRMZM2G474194 1 1665098
1666489
1.4 0 f 1 494 filtered_set; syntelog; UniRef90: B6U4P4_MAIZE Beta-expansin n=3 (Zea mays)... 1 0.98
GRMZM2G703462 1 1754287
1754598
0.3 0 r 1 406 filtered_set; other; UniRef90: No significant hits (1e-5)... 0
GRMZM2G161483 1 1762478
1764682
2.2 2 f 1 396 filtered_set; syntelog; UniRef90: C5WMU8_SORBI Putative uncharacterized pro... 0.45 0.45
GRMZM2G161540 1 1779988
1782907
2.9 0 r 1 378 filtered_set; syntelog; UniRef90: C5WMU5_SORBI Putative uncharacterized pro... 0.92 0.93
AC193500.3_FG003 1 1780238
1781389
1.2 0 f 1 379 filtered_set; syntelog; UniRef90: C5WMU6_SORBI Putative uncharacterized pro... 0.84 0.85
GRMZM2G161560 1 1787686
1789666
2 1 r 1 371 filtered_set; syntelog; UniRef90: B6TH09_MAIZE Immediate-early protein RSP4... 0.94 0.97
GRMZM2G079891 1 1857849
1860470
2.6 4 r 1 300 filtered_set; other; UniRef90: No significant hits (1e-5); maizesequence.or... 1 1
GRMZM2G379898 1 1876848
1878455
1.6 1 f 2 282 filtered_set; syntelog; UniRef90: C3SAB4_BRADI Proline-rich protein n=1 (Br... 0.8 0.93
GRMZM2G060265 1 1955584
1957660
2.1 0 f 1 203 filtered_set; syntelog; UniRef90: B8BI59_ORYSI Putative uncharacterized pro... 0.98 0.99
GRMZM2G361164 1 1955788
1957438
1.7 0 r 1 203 filtered_set; syntelog; UniRef90: Q10T23_ORYSJ Expressed protein n=1 (Oryza... 1 0.97
GRMZM2G060296 1 1962962
1970150
7.2 10 r 4 191 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... spr1 named maize genes 0.99 0.98
GRMZM2G176952 1 1971172
1971873
0.7 0 r 1 189 filtered_set; other; UniRef90: No significant hits (1e-5)... 0.73 0.87
GRMZM2G164696 1 2037790
2040079
2.3 2 f 3 121 filtered_set; syntelog; UniRef90: TBB2_ARATH Tubulin beta-2/beta-3 chain n=... tub1 classical maize genes 0.98 0.86
GRMZM2G703466 1 2042841
2047286
4.4 3 r 2 113 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... 0.92 0.55
GRMZM2G114469 1 2087562
2089837
2.3 3 r 3 71 filtered_set; syntelog; UniRef90: C5WMT1_SORBI Putative uncharacterized pro... 1 0.97
GRMZM2G114459 1 2090701
2104441
13.7 12 r 2 56 filtered_set; ortholog; UniRef90: C5WMS9_SORBI Putative uncharacterized pro... 0.63 0.66
GRMZM2G458423 1 2161370
2168670
7.3 10 r 1 1 filtered_set; syntelog; UniRef90: C5WMS7_SORBI Putative uncharacterized pro... Ds insertions 0.25 0.19
GRMZM2G109725 1 2207877
2212485
4.6 10 r 4 47 filtered_set; syntelog; UniRef90: B6SWY8_MAIZE ASK20 n=3 (Andropogoneae) Ex... 0.97 0.96
GRMZM2G410990 1 2221194
2225913
4.7 11 f 3 61 filtered_set; syntelog; UniRef90: C5WMR8_SORBI Putative uncharacterized pro... 0.59 0.41
GRMZM2G158378 1 2306518
2308141
1.6 1 r 1 146 filtered_set; syntelog; UniRef90: C7G3B4_MAIZE Silicon transporter n=2 (And... 0.95 0.92
GRMZM2G459354 1 2400577
2405041
4.5 3 r 1 64 filtered_set; other; UniRef90: No significant hits (1e-5)... 0
GRMZM2G329177 1 2428332
2435658
7.3 8 f 2 33 filtered_set; syntelog; UniRef90: C5WMR4_SORBI Putative uncharacterized pro... kinesin related genes 0.55 0.34 1 Impr kinesin-related protein
GRMZM2G028870 1 2467011
2469587
2.6 5 r 1 -1 filtered_set; syntelog; UniRef90: Q8H7Q8_ORYSJ Putative uncharacterized pro... Ds insertions 0
GRMZM2G052546 1 2538102
2544683
6.6 14 r 7 69 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... 1 0.97
GRMZM2G035377 1 2657650
2660198
2.5 2 f 1 189 filtered_set; syntelog; UniRef90: C5WMR2_SORBI Putative uncharacterized pro... 0.87 0.93
GRMZM2G085691 1 2685919
2692352
6.4 13 f 3 217 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... 1 0.97
GRMZM2G388684 1 2692901
2694270
1.4 1 r 1 224 filtered_set; syntelog; UniRef90: B6T9H5_MAIZE Xyloglucan endotransglucosyl... 0.91 0.97
GRMZM2G085827 1 2727732
2736340
8.6 7 f 2 259 filtered_set; syntelog; UniRef90: B6TPH1_MAIZE 4-phosphopantetheinyl transf... 1 1
GRMZM2G085872 1 2736650
2741182
4.5 7 r 1 268 filtered_set; syntelog; UniRef90: B6SXJ2_MAIZE Putative uncharacterized pro... 0.66 0.51
GRMZM2G085885 1 2741608
2750630
9 5 f 6 273 filtered_set; ortholog; UniRef90: B4FFW0_MAIZE Peptidyl-prolyl cis-trans is... 1 0.99
GRMZM2G086242 1 2742373
2747035
4.7 7 r 1 274 filtered_set; syntelog; UniRef90: B6SXJ2_MAIZE Putative uncharacterized pro... 1 1
GRMZM2G086269 1 2753150
2755628
2.5 1 f 1 284 filtered_set; syntelog; UniRef90: C5WMN9_SORBI Putative uncharacterized pro... 0.87 0.92
GRMZM2G042552 1 2783894
2786103
2.2 5 f 3 315 filtered_set; syntelog; UniRef90: B6SM72_MAIZE Charged multivesicular body ... 0.98 0.95
GRMZM2G042539 1 2786771
2787850
1.1 3 r 1 318 filtered_set; syntelog; UniRef90: C5WMQ0_SORBI Putative uncharacterized pro... 0
GRMZM2G042250 1 2793728
2800641
6.9 18 f 4 325 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... rld2 named maize genes 0.97 0.92
GRMZM2G041881 1 2801080
2803977
2.9 5 r 2 332 filtered_set; syntelog; UniRef90: B6TMU1_MAIZE Transcription factor BTF3 n=... 0.99 1
GRMZM5G802392 1 2841467
2842386
0.9 0 f 1 373 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... 0.99 0.98
GRMZM2G006673 1 2858784
2871425
12.6 20 f 2 390 filtered_set; syntelog; UniRef90: C5WMN6_SORBI Putative uncharacterized pro... splicing related genes 0.99 0.96
GRMZM2G007025 1 2873514
2876191
2.7 3 f 1 405 filtered_set; syntelog; UniRef90: C5WMN3_SORBI Putative uncharacterized pro... 1 0.8
GRMZM2G015384 1 2876246
2896381
20.1 20 r 3 408 filtered_set; syntelog; UniRef90: B7ZZT1_MAIZE Putative uncharacterized pro... chromatin related genes 0.99 0.94
GRMZM2G436038 1 2908528
2909990
1.5 2 r 1 440 filtered_set; other; UniRef90: No significant hits (1e-5); maizesequence.or... 0
GRMZM2G436286 1 2926714
2928137
1.4 3 f 1 458 filtered_set; ortholog; UniRef90: C5XX59_SORBI Putative uncharacterized pro... 0
GRMZM2G137366 1 2937205
2942164
5 7 f 2 469 filtered_set; syntelog; UniRef90: B6UD67_MAIZE DNA cytosine methyltransfera... chromatin related genes 0.98 0.94
GRMZM2G137352 1 2956672
2958311
1.6 4 f 2 488 filtered_set; syntelog; UniRef90: B6U3W6_MAIZE Remorin n=1 (Zea mays) Exp=5... 0.99 1
GRMZM2G564073 1 2996880
2997851
1 3 r 1 528 filtered_set; other; UniRef90: No significant hits (1e-5)... 0.14 0.14
GRMZM2G137329 1 3000161
3000884
0.7 0 r 1 531 filtered_set; syntelog; UniRef90: B6SP11_MAIZE Nonspecific lipid-transfer p... 0.97 0.81
GRMZM2G137236 1 3009668
3028068
18.4 26 f 1 541 filtered_set; syntelog; UniRef90: C5X138_SORBI Putative uncharacterized pro... 0.56 0.47 2 ImprConf adaptin
GRMZM2G436226 1 3029850
3033965
4.1 7 f 1 561 filtered_set; syntelog; UniRef90: B8ALH1_ORYSI Putative uncharacterized pro... 0.04 0.02
GRMZM2G314660 1 3077769
3082278
4.5 2 r 2 609 filtered_set; syntelog; UniRef90: C5X134_SORBI Putative uncharacterized pro... 0.55 0.72
GRMZM2G092232 1 3130454
3136449
6 19 f 4 662 filtered_set; syntelog; UniRef90: C5X129_SORBI Putative uncharacterized pro... kinesin related genes 0.58 0.56
GRMZM2G393062 1 3136851
3137858
1 0 f 1 668 filtered_set; syntelog; UniRef90: C5X128_SORBI Putative uncharacterized pro... 1 0.99
GRMZM2G092165 1 3138276
3139738
1.5 3 r 2 670 filtered_set; syntelog; UniRef90: Q8GZX2_ORYSJ Os03g0114200 protein n=2 (Or... 0.95 0.81
GRMZM2G124550 1 3178506
3184365
5.9 9 f 3 710 filtered_set; syntelog; possible_pseudogene; UniRef90: B6U6J4_MAIZE ATP bin... gene fusion 0.89 0.95
GRMZM2G144197 1 3195769
3197587
1.8 0 r 1 727 filtered_set; syntelog; UniRef90: B6TNP7_MAIZE ATP binding protein n=2 (And... 1 0.97
GRMZM2G144101 1 3199278
3201120
1.8 2 r 3 731 filtered_set; syntelog; UniRef90: TIM9_ORYSJ Mitochondrial import inner mem... 1.12 0.93
GRMZM2G077615 1 3269323
3271219
1.9 0 f 1 774 filtered_set; syntelog; UniRef90: C4J0J8_MAIZE Putative uncharacterized pro... 1 0.96
GRMZM2G077669 1 3272429
3276331
3.9 7 f 1 769 filtered_set; syntelog; UniRef90: Q8GZW6_ORYSJ Os03g0114800 protein n=4 (Po... 0.9 0.97
GRMZM2G077760 1 3278525
3279776
1.3 0 r 1 765 filtered_set; syntelog; UniRef90: B6SJS3_MAIZE Mitochondrial import inner m... 0.58 0.87
GRMZM2G077769 1 3280273
3281467
1.2 1 f 1 764 filtered_set; syntelog; UniRef90: B8A226_MAIZE Putative uncharacterized pro... 0.8 0.94
GRMZM2G077780 1 3281769
3286701
4.9 6 r 3 758 filtered_set; syntelog; UniRef90: C5X121_SORBI Putative uncharacterized pro... 0.83 0.93
GRMZM2G126199 1 3354865
3356892
2 5 f 4 688 filtered_set; syntelog; UniRef90: C0PMJ8_MAIZE Putative uncharacterized pro... 1 0.97
GRMZM2G126218 1 3360206
3363923
3.7 7 r 2 681 filtered_set; syntelog; UniRef90: No significant hits (1e-5); maizesequence... 0.72 0.64
GRMZM2G426802 1 3364324
3369043
4.7 6 r 1 676 filtered_set; syntelog; UniRef90: B6SWG5_MAIZE Signal transducer n=2 (Andro... 0.9 0.97

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!