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Maize BAC Annotation


The Maize Genome Sequencing Project currently deposits maize BACs to GenBank at a rate of more than 50 BACs per day. Our annotation workflow retrieves these BACs every night and provides tentative annotation views based on transcript evidence and mapping of putative rice homologs. Because most of the deposited BACs are unfinished (Phase 1), some of the predicted gene models may be incomplete. Ensembl ContigView annotation displays for improved BACs that are finished in genic regions are provided by MaizeSequence.org.

The table below organizes the ZmGDB annotation results - you can browse the latest results (Date column), look at particular BACs (GI column), search for BACs in a particular chromosome (Chr column) or in a particular contig or search for specific putative rice homologs by ID or description. Additional table features and functions are summarized here. For quick table tips, hover over any underlined link.


(search examples: 183583661; 2; ctg91; LOC_Os07g49230.1; Phosph*; or paste a list of GI's) [ Export search result ] [ Next >> ] (Showing 1 - 100 of 22415 records / 7828 BACs) ]
GDB BAC GI Acc Clone name Chr Contig Chr_start BAC length Rice putative homolog Start position End position Description Arabidopsis blast hit Evalue Date
193083300 AC191671 CH201-117H2; ZMMBBc0117H02 5 ctg219 49803600 181651 LOC_Os06g46900.1 84358 86629 phosphosulfolactate synthase-related protein, putative, expressed 2008-06-29
193083300 AC191671 CH201-117H2; ZMMBBc0117H02 5 ctg219 49803600 181651 LOC_Os06g46940.1 174054 175492 cyanogenic beta-glucosidase precursor, putative, expressed AT5G54570.1 1e-94 2008-06-29
193083300 AC191671 CH201-117H2; ZMMBBc0117H02 5 ctg219 49803600 181651 LOC_Os06g46930.1 179832 180673 50S ribosomal protein L24, chloroplast precursor, putative, expressed AT5G54600.1 2e-59 2008-06-29
193083299 AC191132 fDs ID:B.S07.1006_JSR04_JSR05_dir 2 ctg78 40488700 143051 107619 107637 Ds transposon flanking sequence (fDs) 2008-06-29
193083299 AC191132 CH201-110F24; ZMMBBc0110F24 2 ctg78 40488700 143051 LOC_Os04g38740.1 111321 113355 DNA binding protein, putative, expressed AT5G15310.1 9e-73 2008-06-29
193083299 AC191132 CH201-110F24; ZMMBBc0110F24 2 ctg78 40488700 143051 LOC_Os04g38750.1 115462 116037 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed AT1G68590.1 2e-36 2008-06-29
193083299 AC191132 CH201-110F24; ZMMBBc0110F24 2 ctg78 40488700 143051 LOC_Os04g38770.1 124508 124987 MADS-box transcription factor 27, putative, expressed AT4G37940.1 6e-34 2008-06-29
193083298 AC207427 CH201-154J8; ZMMBBc0154J08 3 ctg141 189992600 169251 LOC_Os01g54930.1 42862 44388 vascular plant one zinc finger protein, putative, expressed AT1G28520.1 3e-99 2008-06-29
193083298 AC207427 fDs ID:I.S06.0455_JSR05 3 ctg141 189992600 169251 161629 160721 Ds transposon flanking sequence (fDs) 2008-06-29
193083296 AC209776 CH201-11A9; ZMMBBc0011A09 8 ctg330 26602100 206661 LOC_Os01g13160.1 25682 30401 expressed protein AT3G16270.1 4e-165 2008-06-29
193083296 AC209776 CH201-11A9; ZMMBBc0011A09 8 ctg330 26602100 206661 LOC_Os01g13150.1 119449 124610 metallo-beta-lactamase superfamily protein, expressed AT1G52160.1 0.0 2008-06-29
193083294 AC207456 CH201-155B5; ZMMBBc0155B05 5 ctg223 72137800 170467 LOC_Os02g49530.1 15299 16617 expressed protein AT1G16810.2 1e-38 2008-06-29
193083294 AC207456 CH201-155B5; ZMMBBc0155B05 5 ctg223 72137800 170467 LOC_Os02g02140.1 97125 100301 receptor protein kinase CLAVATA1 precursor, putative, expressed AT4G28650.1 0.0 2008-06-29
193083294 AC207456 CH201-155B5; ZMMBBc0155B05 5 ctg223 72137800 170467 LOC_Os02g56990.1 103914 105472 60S ribosomal protein L37, putative, expressed AT3G16080.1 1e-43 2008-06-29
193083294 AC207456 CH201-155B5; ZMMBBc0155B05 5 ctg223 72137800 170467 LOC_Os08g03450.1 103917 105472 60S ribosomal protein L37, putative, expressed AT1G15250.1 2e-43 2008-06-29
193083294 AC207456 CH201-155B5; ZMMBBc0155B05 5 ctg223 72137800 170467 LOC_Os02g02130.1 104031 105472 60S ribosomal protein L37, putative AT1G15250.1 8e-44 2008-06-29
193083294 AC207456 CH201-155B5; ZMMBBc0155B05 5 ctg223 72137800 170467 LOC_Os01g39810.1 127561 130715 mannosyltransferase, putative, expressed AT5G14850.1 4e-167 2008-06-29
193083294 AC207456 CH201-155B5; ZMMBBc0155B05 5 ctg223 72137800 170467 LOC_Os02g02110.1 127561 130294 dolichyl-phosphate-mannose--glycolipid alpha-mannosyltransferase-like protein, putative, expressed AT5G14850.2 9e-127 2008-06-29
193083293 AC207351 CH201-166L5; ZMMBBc0166L05 1 ctg41 183882300 189441 LOC_Os08g42920.1 16109 17638 60S ribosomal protein L7, putative, expressed AT1G80750.1 9e-63 2008-06-29
193083293 AC207351 CH201-166L5; ZMMBBc0166L05 1 ctg41 183882300 189441 LOC_Os08g42870.1 158353 162051 expressed protein AT1G08760.1 9e-109 2008-06-29
193083293 AC207351 CH201-166L5; ZMMBBc0166L05 1 ctg41 183882300 189441 LOC_Os07g36254.1 173374 173732 60S ribosomal protein L38, putative, expressed AT3G59540.1 7e-30 2008-06-29
193083293 AC207351 CH201-166L5; ZMMBBc0166L05 1 ctg41 183882300 189441 LOC_Os11g24610.1 173511 173732 60S ribosomal protein L38, putative, expressed AT3G59540.1 6e-28 2008-06-29
193083291 AC198217 CH201-200F8; ZMMBBc0200F08 UNKNOWN ctg489 106903300 165471 LOC_Os01g63890.1 104252 105929 protein G10 homolog 1, putative, expressed AT4G21110.1 5e-80 2008-06-29
193083291 AC198217 CH201-200F8; ZMMBBc0200F08 UNKNOWN ctg489 106903300 165471 LOC_Os05g37390.1 104252 105929 protein G10 homolog 2, putative, expressed AT4G21110.1 1e-78 2008-06-29
193083291 AC198217 CH201-200F8; ZMMBBc0200F08 UNKNOWN ctg489 106903300 165471 LOC_Os04g55290.1 104252 105929 protein G10 homolog 1, putative, expressed AT4G21110.1 5e-80 2008-06-29
193083291 AC198217 CH201-200F8; ZMMBBc0200F08 UNKNOWN ctg489 106903300 165471 LOC_Os12g05410.1 104252 105929 protein G10 homolog 3, putative, expressed AT4G21110.1 3e-75 2008-06-29
193083290 AC197104 CH201-187A17; ZMMBBc0187A17 2 ctg108 220553900 168303 LOC_Os01g37837.1 86675 90663 seryl-tRNA synthetase, putative, expressed AT5G27470.1 0.0 2008-06-29
193083290 AC197104 CH201-187A17; ZMMBBc0187A17 2 ctg108 220553900 168303 LOC_Os03g10190.1 86675 90663 seryl-tRNA synthetase, putative, expressed AT5G27470.1 0.0 2008-06-29
193083290 AC197104 CH201-187A17; ZMMBBc0187A17 2 ctg108 220553900 168303 LOC_Os11g31980.1 109422 112156 serine carboxypeptidase 1 precursor, putative, expressed AT1G28110.2 0.0 2008-06-29
193083288 AC209458 CH201-204L5; ZMMBBc0204L05 1 ctg2 3332000 171630 LOC_Os12g38310.1 10183 11402 mitochondrial import inner membrane translocase subunit Tim9, putative, expressed AT3G46560.1 1e-38 2008-06-29
193083288 AC209458 CH201-204L5; ZMMBBc0204L05 1 ctg2 3332000 171630 LOC_Os10g37500.1 13457 15063 ATP binding protein, putative, expressed AT2G46620.1 4e-88 2008-06-29
193083288 AC209458 CH201-204L5; ZMMBBc0204L05 1 ctg2 3332000 171630 LOC_Os03g02330.1 13466 15056 ATP binding protein, putative, expressed AT2G46620.1 1e-89 2008-06-29
193083288 AC209458 CH201-204L5; ZMMBBc0204L05 1 ctg2 3332000 171630 LOC_Os03g02320.1 18812 32314 ATP binding protein, putative, expressed AT4G10730.1 0.0 2008-06-29
193083288 AC209458 CH201-204L5; ZMMBBc0204L05 1 ctg2 3332000 171630 LOC_Os10g37520.1 130031 132914 major Facilitator Superfamily protein, expressed AT1G64650.1 0.0 2008-06-29
193083288 AC209458 CH201-204L5; ZMMBBc0204L05 1 ctg2 3332000 171630 LOC_Os03g02380.1 130031 132914 major Facilitator Superfamily protein, expressed AT1G64650.1 0.0 2008-06-29
193083288 AC209458 CH201-204L5; ZMMBBc0204L05 1 ctg2 3332000 171630 LOC_Os03g02390.1 136150 136746 mitochondrial import inner membrane translocase subunit tim23, putative, expressed AT1G17530.1 2e-43 2008-06-29
193083288 AC209458 CH201-204L5; ZMMBBc0204L05 1 ctg2 3332000 171630 LOC_Os10g37530.1 136150 136726 mitochondrial import inner membrane translocase subunit tim23, putative, expressed AT1G72750.1 3e-32 2008-06-29
193083288 AC209458 CH201-204L5; ZMMBBc0204L05 1 ctg2 3332000 171630 LOC_Os03g02410.1 139274 143918 ATP binding protein, putative, expressed AT1G01220.1 0.0 2008-06-29
193083286 AC188737 CH201-213M10; ZMMBBc0213M10 8 ctg354 118364400 274776 LOC_Os05g05740.1 135831 136834 proline synthetase co-transcribed bacterial homolog protein, putative, expressed AT1G11930.2 1e-96 2008-06-29
193083286 AC188737 CH201-213M10; ZMMBBc0213M10 8 ctg354 118364400 274776 LOC_Os01g27150.1 221564 229126 cullin-1, putative, expressed AT4G02570.3 0.0 2008-06-29
193083286 AC188737 CH201-213M10; ZMMBBc0213M10 8 ctg354 118364400 274776 LOC_Os05g05700.1 221564 229126 cullin-1, putative, expressed AT4G02570.3 0.0 2008-06-29
193083285 AC202395 CH201-236D16; ZMMBBc0236D16 2 ctg100 183877400 165609 LOC_Os09g33850.1 61571 66310 OsFTL4 - Rice FT-Like4 homogous to Arabidopsis Flowering Locus T gene, expressed AT1G65480.1 4e-63 2008-06-29
193083284 AC205269 fDs ID:B.S06.0317_JSR05 4 ctg171 91046900 178044 1369 1204 Ds transposon flanking sequence (fDs) 2008-06-29
193083282 AC202393 CH201-238H9; ZMMBBc0238H09 5 ctg235 136009300 141914 LOC_Os02g16709.1 10383 26431 signal peptidase I-1, putative, expressed AT3G24590.1 1e-85 2008-06-29
193083282 AC202393 CH201-238H9; ZMMBBc0238H09 5 ctg235 136009300 141914 LOC_Os02g47180.1 105391 107763 cell division cycle protein 20, putative, expressed AT4G33270.1 5e-179 2008-06-29
193083282 AC202393 CH201-238H9; ZMMBBc0238H09 5 ctg235 136009300 141914 LOC_Os04g51110.1 105391 107767 cell division cycle protein 20, putative, expressed AT4G33270.1 6e-180 2008-06-29
193083281 AC209379 CH201-273D8; ZMMBBc0273D08 UNKNOWN ctg443 38391500 143347 LOC_Os02g02310.1 44205 46270 nodulin-like protein 5NG4, putative, expressed AT1G75500.1 1e-113 2008-06-29
193083281 AC209379 CH201-273D8; ZMMBBc0273D08 UNKNOWN ctg443 38391500 143347 LOC_Os08g44750.1 44205 46284 nodulin-like protein 5NG4, putative, expressed AT1G75500.1 1e-144 2008-06-29
193083280 AC207400 CH201-270D11; ZMMBBc0270D11 5 ctg240 172930800 180676 LOC_Os02g35450.1 75229 76117 DNA-repair protein XRCC3, putative AT5G57450.2 8e-37 2008-06-29
193083279 AC207398 CH201-283N20; ZMMBBc0283N20 5 ctg236 156177700 178400 LOC_Os02g11840.1 142756 147277 coatomer subunit beta, putative, expressed AT3G15980.3 0.0 2008-06-29
193083279 AC207398 CH201-283N20; ZMMBBc0283N20 5 ctg236 156177700 178400 LOC_Os02g11830.1 142756 150499 coatomer subunit beta, putative, expressed AT1G52360.1 0.0 2008-06-29
193083279 AC207398 CH201-283N20; ZMMBBc0283N20 5 ctg236 156177700 178400 LOC_Os06g05180.1 142777 150499 coatomer subunit beta, putative, expressed AT3G15980.3 0.0 2008-06-29
193083276 AC207396 CH201-287O15; ZMMBBc0287O15 3 ctg149 209729800 154566 LOC_Os01g38510.1 46105 46347 protein transport protein Sec61 beta subunit, putative, expressed AT3G60540.2 5e-12 2008-06-29
193083276 AC207396 CH201-287O15; ZMMBBc0287O15 3 ctg149 209729800 154566 LOC_Os12g07490.1 46108 46347 protein transport protein Sec61 beta subunit, putative, expressed AT3G60540.2 1e-11 2008-06-29
193083276 AC207396 CH201-287O15; ZMMBBc0287O15 3 ctg149 209729800 154566 LOC_Os01g38500.1 50330 50996 cp protein, putative, expressed AT5G37070.1 1e-62 2008-06-29
193083276 AC207396 CH201-287O15; ZMMBBc0287O15 3 ctg149 209729800 154566 LOC_Os07g34570.1 104888 106112 thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed AT5G54770.1 2e-142 2008-06-29
193083273 AC212362 CH201-81F2; ZMMBBc0081F02 4 ctg169 79566200 196918 LOC_Os08g44090.1 115511 119848 transmembrane 9 superfamily protein member 2 precursor, putative, expressed AT5G10840.1 0.0 2008-06-29
193083273 AC212362 CH201-81F2; ZMMBBc0081F02 4 ctg169 79566200 196918 LOC_Os08g44100.1 115511 119848 transmembrane 9 superfamily protein member 2 precursor, putative, expressed AT5G10840.1 0.0 2008-06-29
193083273 AC212362 CH201-81F2; ZMMBBc0081F02 4 ctg169 79566200 196918 LOC_Os08g44140.1 115511 119848 transmembrane 9 superfamily protein member 2 precursor, putative, expressed AT5G10840.1 0.0 2008-06-29
193083273 AC212362 CH201-81F2; ZMMBBc0081F02 4 ctg169 79566200 196918 LOC_Os09g38530.1 115527 119848 transmembrane 9 superfamily protein member 4, putative, expressed AT5G10840.1 0.0 2008-06-29
193083273 AC212362 CH201-81F2; ZMMBBc0081F02 4 ctg169 79566200 196918 LOC_Os06g44140.1 115553 119848 transmembrane 9 superfamily protein member 4, putative, expressed AT5G25100.1 0.0 2008-06-29
193083273 AC212362 CH201-81F2; ZMMBBc0081F02 4 ctg169 79566200 196918 LOC_Os08g17370.1 118991 119530 transmembrane 9 superfamily protein member 2 precursor, putative, expressed AT5G25100.1 1e-79 2008-06-29
193083272 AC212227 CH201-64A19; ZMMBBc0064A19 4 ctg163 31727500 180711 LOC_Os08g06380.1 97013 102635 CSLF6 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed AT5G16910.1 0.0 2008-06-29
193083272 AC212227 CH201-64A19; ZMMBBc0064A19 4 ctg163 31727500 180711 LOC_Os08g06450.1 126774 128559 choline-phosphate cytidylyltransferase B, putative, expressed AT4G15130.1 3e-109 2008-06-29
193083272 AC212227 CH201-64A19; ZMMBBc0064A19 4 ctg163 31727500 180711 LOC_Os08g06430.1 138001 140976 mitochondrial NADH ubiquinone oxidoreductase 13kD-like subunit, putative, expressed AT3G03070.1 3e-31 2008-06-29
193083270 AC212133 CH201-57B14; ZMMBBc0057B14 4 ctg188 200993100 175041 LOC_Os08g37490.1 52450 53446 14-3-3-like protein A, putative, expressed AT1G78300.1 1e-89 2008-06-29
193083270 AC212133 CH201-57B14; ZMMBBc0057B14 4 ctg188 200993100 175041 LOC_Os04g38870.1 52453 53453 14-3-3-like protein GF14-6, putative, expressed AT3G02520.1 2e-121 2008-06-29
193083270 AC212133 CH201-57B14; ZMMBBc0057B14 4 ctg188 200993100 175041 LOC_Os02g36974.1 52453 53456 14-3-3-like protein B, putative, expressed AT3G02520.1 1e-121 2008-06-29
193083270 AC212133 CH201-57B14; ZMMBBc0057B14 4