The Maize Genome Sequencing Project currently deposits maize BACs to GenBank at a rate of more than 50 BACs per day. Our annotation workflow retrieves these BACs every night and provides tentative annotation views based on transcript evidence and mapping of putative rice homologs. Because most of the deposited BACs are unfinished (Phase 1), some of the predicted gene models may be incomplete. Ensembl ContigView annotation displays for improved BACs that are finished in genic regions are provided by MaizeSequence.org.
The table below organizes the ZmGDB annotation results - you can browse the latest results (Date column), look at particular BACs (GI column), search for BACs in a particular chromosome (Chr column) or in a particular contig or search for specific putative rice homologs by ID or description. Additional table features and functions are summarized here. For quick table tips, hover over any underlined link.
| (search examples: 183583661; 2; ctg91; LOC_Os07g49230.1; Phosph*; or paste a list of GI's) | [ Export search result ] [ Next >> ] (Showing 1 - 100 of 22415 records / 7828 BACs) ] |
| GDB | BAC GI | Acc | Clone name | Chr | Contig | Chr_start | BAC length | Rice putative homolog | Start position | End position | Description | Arabidopsis blast hit | Evalue | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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193083300 | AC191671 | CH201-117H2; ZMMBBc0117H02 | 5 | ctg219 | 49803600 | 181651 | LOC_Os06g46900.1 | 84358 | 86629 | phosphosulfolactate synthase-related protein, putative, expressed | 2008-06-29 | ||
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193083300 | AC191671 | CH201-117H2; ZMMBBc0117H02 | 5 | ctg219 | 49803600 | 181651 | LOC_Os06g46940.1 | 174054 | 175492 | cyanogenic beta-glucosidase precursor, putative, expressed | AT5G54570.1 | 1e-94 | 2008-06-29 |
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193083300 | AC191671 | CH201-117H2; ZMMBBc0117H02 | 5 | ctg219 | 49803600 | 181651 | LOC_Os06g46930.1 | 179832 | 180673 | 50S ribosomal protein L24, chloroplast precursor, putative, expressed | AT5G54600.1 | 2e-59 | 2008-06-29 |
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193083299 | AC191132 | fDs ID:B.S07.1006_JSR04_JSR05_dir | 2 | ctg78 | 40488700 | 143051 | 107619 | 107637 | Ds transposon flanking sequence (fDs) | 2008-06-29 | |||
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193083299 | AC191132 | CH201-110F24; ZMMBBc0110F24 | 2 | ctg78 | 40488700 | 143051 | LOC_Os04g38740.1 | 111321 | 113355 | DNA binding protein, putative, expressed | AT5G15310.1 | 9e-73 | 2008-06-29 |
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193083299 | AC191132 | CH201-110F24; ZMMBBc0110F24 | 2 | ctg78 | 40488700 | 143051 | LOC_Os04g38750.1 | 115462 | 116037 | plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed | AT1G68590.1 | 2e-36 | 2008-06-29 |
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193083299 | AC191132 | CH201-110F24; ZMMBBc0110F24 | 2 | ctg78 | 40488700 | 143051 | LOC_Os04g38770.1 | 124508 | 124987 | MADS-box transcription factor 27, putative, expressed | AT4G37940.1 | 6e-34 | 2008-06-29 |
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193083298 | AC207427 | CH201-154J8; ZMMBBc0154J08 | 3 | ctg141 | 189992600 | 169251 | LOC_Os01g54930.1 | 42862 | 44388 | vascular plant one zinc finger protein, putative, expressed | AT1G28520.1 | 3e-99 | 2008-06-29 |
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193083298 | AC207427 | fDs ID:I.S06.0455_JSR05 | 3 | ctg141 | 189992600 | 169251 | 161629 | 160721 | Ds transposon flanking sequence (fDs) | 2008-06-29 | |||
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193083296 | AC209776 | CH201-11A9; ZMMBBc0011A09 | 8 | ctg330 | 26602100 | 206661 | LOC_Os01g13160.1 | 25682 | 30401 | expressed protein | AT3G16270.1 | 4e-165 | 2008-06-29 |
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193083296 | AC209776 | CH201-11A9; ZMMBBc0011A09 | 8 | ctg330 | 26602100 | 206661 | LOC_Os01g13150.1 | 119449 | 124610 | metallo-beta-lactamase superfamily protein, expressed | AT1G52160.1 | 0.0 | 2008-06-29 |
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193083294 | AC207456 | CH201-155B5; ZMMBBc0155B05 | 5 | ctg223 | 72137800 | 170467 | LOC_Os02g49530.1 | 15299 | 16617 | expressed protein | AT1G16810.2 | 1e-38 | 2008-06-29 |
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193083294 | AC207456 | CH201-155B5; ZMMBBc0155B05 | 5 | ctg223 | 72137800 | 170467 | LOC_Os02g02140.1 | 97125 | 100301 | receptor protein kinase CLAVATA1 precursor, putative, expressed | AT4G28650.1 | 0.0 | 2008-06-29 |
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193083294 | AC207456 | CH201-155B5; ZMMBBc0155B05 | 5 | ctg223 | 72137800 | 170467 | LOC_Os02g56990.1 | 103914 | 105472 | 60S ribosomal protein L37, putative, expressed | AT3G16080.1 | 1e-43 | 2008-06-29 |
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193083294 | AC207456 | CH201-155B5; ZMMBBc0155B05 | 5 | ctg223 | 72137800 | 170467 | LOC_Os08g03450.1 | 103917 | 105472 | 60S ribosomal protein L37, putative, expressed | AT1G15250.1 | 2e-43 | 2008-06-29 |
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193083294 | AC207456 | CH201-155B5; ZMMBBc0155B05 | 5 | ctg223 | 72137800 | 170467 | LOC_Os02g02130.1 | 104031 | 105472 | 60S ribosomal protein L37, putative | AT1G15250.1 | 8e-44 | 2008-06-29 |
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193083294 | AC207456 | CH201-155B5; ZMMBBc0155B05 | 5 | ctg223 | 72137800 | 170467 | LOC_Os01g39810.1 | 127561 | 130715 | mannosyltransferase, putative, expressed | AT5G14850.1 | 4e-167 | 2008-06-29 |
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193083294 | AC207456 | CH201-155B5; ZMMBBc0155B05 | 5 | ctg223 | 72137800 | 170467 | LOC_Os02g02110.1 | 127561 | 130294 | dolichyl-phosphate-mannose--glycolipid alpha-mannosyltransferase-like protein, putative, expressed | AT5G14850.2 | 9e-127 | 2008-06-29 |
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193083293 | AC207351 | CH201-166L5; ZMMBBc0166L05 | 1 | ctg41 | 183882300 | 189441 | LOC_Os08g42920.1 | 16109 | 17638 | 60S ribosomal protein L7, putative, expressed | AT1G80750.1 | 9e-63 | 2008-06-29 |
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193083293 | AC207351 | CH201-166L5; ZMMBBc0166L05 | 1 | ctg41 | 183882300 | 189441 | LOC_Os08g42870.1 | 158353 | 162051 | expressed protein | AT1G08760.1 | 9e-109 | 2008-06-29 |
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193083293 | AC207351 | CH201-166L5; ZMMBBc0166L05 | 1 | ctg41 | 183882300 | 189441 | LOC_Os07g36254.1 | 173374 | 173732 | 60S ribosomal protein L38, putative, expressed | AT3G59540.1 | 7e-30 | 2008-06-29 |
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193083293 | AC207351 | CH201-166L5; ZMMBBc0166L05 | 1 | ctg41 | 183882300 | 189441 | LOC_Os11g24610.1 | 173511 | 173732 | 60S ribosomal protein L38, putative, expressed | AT3G59540.1 | 6e-28 | 2008-06-29 |
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193083291 | AC198217 | CH201-200F8; ZMMBBc0200F08 | UNKNOWN | ctg489 | 106903300 | 165471 | LOC_Os01g63890.1 | 104252 | 105929 | protein G10 homolog 1, putative, expressed | AT4G21110.1 | 5e-80 | 2008-06-29 |
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193083291 | AC198217 | CH201-200F8; ZMMBBc0200F08 | UNKNOWN | ctg489 | 106903300 | 165471 | LOC_Os05g37390.1 | 104252 | 105929 | protein G10 homolog 2, putative, expressed | AT4G21110.1 | 1e-78 | 2008-06-29 |
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193083291 | AC198217 | CH201-200F8; ZMMBBc0200F08 | UNKNOWN | ctg489 | 106903300 | 165471 | LOC_Os04g55290.1 | 104252 | 105929 | protein G10 homolog 1, putative, expressed | AT4G21110.1 | 5e-80 | 2008-06-29 |
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193083291 | AC198217 | CH201-200F8; ZMMBBc0200F08 | UNKNOWN | ctg489 | 106903300 | 165471 | LOC_Os12g05410.1 | 104252 | 105929 | protein G10 homolog 3, putative, expressed | AT4G21110.1 | 3e-75 | 2008-06-29 |
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193083290 | AC197104 | CH201-187A17; ZMMBBc0187A17 | 2 | ctg108 | 220553900 | 168303 | LOC_Os01g37837.1 | 86675 | 90663 | seryl-tRNA synthetase, putative, expressed | AT5G27470.1 | 0.0 | 2008-06-29 |
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193083290 | AC197104 | CH201-187A17; ZMMBBc0187A17 | 2 | ctg108 | 220553900 | 168303 | LOC_Os03g10190.1 | 86675 | 90663 | seryl-tRNA synthetase, putative, expressed | AT5G27470.1 | 0.0 | 2008-06-29 |
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193083290 | AC197104 | CH201-187A17; ZMMBBc0187A17 | 2 | ctg108 | 220553900 | 168303 | LOC_Os11g31980.1 | 109422 | 112156 | serine carboxypeptidase 1 precursor, putative, expressed | AT1G28110.2 | 0.0 | 2008-06-29 |
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193083288 | AC209458 | CH201-204L5; ZMMBBc0204L05 | 1 | ctg2 | 3332000 | 171630 | LOC_Os12g38310.1 | 10183 | 11402 | mitochondrial import inner membrane translocase subunit Tim9, putative, expressed | AT3G46560.1 | 1e-38 | 2008-06-29 |
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193083288 | AC209458 | CH201-204L5; ZMMBBc0204L05 | 1 | ctg2 | 3332000 | 171630 | LOC_Os10g37500.1 | 13457 | 15063 | ATP binding protein, putative, expressed | AT2G46620.1 | 4e-88 | 2008-06-29 |
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193083288 | AC209458 | CH201-204L5; ZMMBBc0204L05 | 1 | ctg2 | 3332000 | 171630 | LOC_Os03g02330.1 | 13466 | 15056 | ATP binding protein, putative, expressed | AT2G46620.1 | 1e-89 | 2008-06-29 |
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193083288 | AC209458 | CH201-204L5; ZMMBBc0204L05 | 1 | ctg2 | 3332000 | 171630 | LOC_Os03g02320.1 | 18812 | 32314 | ATP binding protein, putative, expressed | AT4G10730.1 | 0.0 | 2008-06-29 |
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193083288 | AC209458 | CH201-204L5; ZMMBBc0204L05 | 1 | ctg2 | 3332000 | 171630 | LOC_Os10g37520.1 | 130031 | 132914 | major Facilitator Superfamily protein, expressed | AT1G64650.1 | 0.0 | 2008-06-29 |
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193083288 | AC209458 | CH201-204L5; ZMMBBc0204L05 | 1 | ctg2 | 3332000 | 171630 | LOC_Os03g02380.1 | 130031 | 132914 | major Facilitator Superfamily protein, expressed | AT1G64650.1 | 0.0 | 2008-06-29 |
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193083288 | AC209458 | CH201-204L5; ZMMBBc0204L05 | 1 | ctg2 | 3332000 | 171630 | LOC_Os03g02390.1 | 136150 | 136746 | mitochondrial import inner membrane translocase subunit tim23, putative, expressed | AT1G17530.1 | 2e-43 | 2008-06-29 |
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193083288 | AC209458 | CH201-204L5; ZMMBBc0204L05 | 1 | ctg2 | 3332000 | 171630 | LOC_Os10g37530.1 | 136150 | 136726 | mitochondrial import inner membrane translocase subunit tim23, putative, expressed | AT1G72750.1 | 3e-32 | 2008-06-29 |
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193083288 | AC209458 | CH201-204L5; ZMMBBc0204L05 | 1 | ctg2 | 3332000 | 171630 | LOC_Os03g02410.1 | 139274 | 143918 | ATP binding protein, putative, expressed | AT1G01220.1 | 0.0 | 2008-06-29 |
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193083286 | AC188737 | CH201-213M10; ZMMBBc0213M10 | 8 | ctg354 | 118364400 | 274776 | LOC_Os05g05740.1 | 135831 | 136834 | proline synthetase co-transcribed bacterial homolog protein, putative, expressed | AT1G11930.2 | 1e-96 | 2008-06-29 |
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193083286 | AC188737 | CH201-213M10; ZMMBBc0213M10 | 8 | ctg354 | 118364400 | 274776 | LOC_Os01g27150.1 | 221564 | 229126 | cullin-1, putative, expressed | AT4G02570.3 | 0.0 | 2008-06-29 |
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193083286 | AC188737 | CH201-213M10; ZMMBBc0213M10 | 8 | ctg354 | 118364400 | 274776 | LOC_Os05g05700.1 | 221564 | 229126 | cullin-1, putative, expressed | AT4G02570.3 | 0.0 | 2008-06-29 |
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193083285 | AC202395 | CH201-236D16; ZMMBBc0236D16 | 2 | ctg100 | 183877400 | 165609 | LOC_Os09g33850.1 | 61571 | 66310 | OsFTL4 - Rice FT-Like4 homogous to Arabidopsis Flowering Locus T gene, expressed | AT1G65480.1 | 4e-63 | 2008-06-29 |
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193083284 | AC205269 | fDs ID:B.S06.0317_JSR05 | 4 | ctg171 | 91046900 | 178044 | 1369 | 1204 | Ds transposon flanking sequence (fDs) | 2008-06-29 | |||
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193083282 | AC202393 | CH201-238H9; ZMMBBc0238H09 | 5 | ctg235 | 136009300 | 141914 | LOC_Os02g16709.1 | 10383 | 26431 | signal peptidase I-1, putative, expressed | AT3G24590.1 | 1e-85 | 2008-06-29 |
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193083282 | AC202393 | CH201-238H9; ZMMBBc0238H09 | 5 | ctg235 | 136009300 | 141914 | LOC_Os02g47180.1 | 105391 | 107763 | cell division cycle protein 20, putative, expressed | AT4G33270.1 | 5e-179 | 2008-06-29 |
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193083282 | AC202393 | CH201-238H9; ZMMBBc0238H09 | 5 | ctg235 | 136009300 | 141914 | LOC_Os04g51110.1 | 105391 | 107767 | cell division cycle protein 20, putative, expressed | AT4G33270.1 | 6e-180 | 2008-06-29 |
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193083281 | AC209379 | CH201-273D8; ZMMBBc0273D08 | UNKNOWN | ctg443 | 38391500 | 143347 | LOC_Os02g02310.1 | 44205 | 46270 | nodulin-like protein 5NG4, putative, expressed | AT1G75500.1 | 1e-113 | 2008-06-29 |
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193083281 | AC209379 | CH201-273D8; ZMMBBc0273D08 | UNKNOWN | ctg443 | 38391500 | 143347 | LOC_Os08g44750.1 | 44205 | 46284 | nodulin-like protein 5NG4, putative, expressed | AT1G75500.1 | 1e-144 | 2008-06-29 |
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193083280 | AC207400 | CH201-270D11; ZMMBBc0270D11 | 5 | ctg240 | 172930800 | 180676 | LOC_Os02g35450.1 | 75229 | 76117 | DNA-repair protein XRCC3, putative | AT5G57450.2 | 8e-37 | 2008-06-29 |
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193083279 | AC207398 | CH201-283N20; ZMMBBc0283N20 | 5 | ctg236 | 156177700 | 178400 | LOC_Os02g11840.1 | 142756 | 147277 | coatomer subunit beta, putative, expressed | AT3G15980.3 | 0.0 | 2008-06-29 |
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193083279 | AC207398 | CH201-283N20; ZMMBBc0283N20 | 5 | ctg236 | 156177700 | 178400 | LOC_Os02g11830.1 | 142756 | 150499 | coatomer subunit beta, putative, expressed | AT1G52360.1 | 0.0 | 2008-06-29 |
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193083279 | AC207398 | CH201-283N20; ZMMBBc0283N20 | 5 | ctg236 | 156177700 | 178400 | LOC_Os06g05180.1 | 142777 | 150499 | coatomer subunit beta, putative, expressed | AT3G15980.3 | 0.0 | 2008-06-29 |
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193083276 | AC207396 | CH201-287O15; ZMMBBc0287O15 | 3 | ctg149 | 209729800 | 154566 | LOC_Os01g38510.1 | 46105 | 46347 | protein transport protein Sec61 beta subunit, putative, expressed | AT3G60540.2 | 5e-12 | 2008-06-29 |
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193083276 | AC207396 | CH201-287O15; ZMMBBc0287O15 | 3 | ctg149 | 209729800 | 154566 | LOC_Os12g07490.1 | 46108 | 46347 | protein transport protein Sec61 beta subunit, putative, expressed | AT3G60540.2 | 1e-11 | 2008-06-29 |
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193083276 | AC207396 | CH201-287O15; ZMMBBc0287O15 | 3 | ctg149 | 209729800 | 154566 | LOC_Os01g38500.1 | 50330 | 50996 | cp protein, putative, expressed | AT5G37070.1 | 1e-62 | 2008-06-29 |
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193083276 | AC207396 | CH201-287O15; ZMMBBc0287O15 | 3 | ctg149 | 209729800 | 154566 | LOC_Os07g34570.1 | 104888 | 106112 | thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed | AT5G54770.1 | 2e-142 | 2008-06-29 |
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193083273 | AC212362 | CH201-81F2; ZMMBBc0081F02 | 4 | ctg169 | 79566200 | 196918 | LOC_Os08g44090.1 | 115511 | 119848 | transmembrane 9 superfamily protein member 2 precursor, putative, expressed | AT5G10840.1 | 0.0 | 2008-06-29 |
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193083273 | AC212362 | CH201-81F2; ZMMBBc0081F02 | 4 | ctg169 | 79566200 | 196918 | LOC_Os08g44100.1 | 115511 | 119848 | transmembrane 9 superfamily protein member 2 precursor, putative, expressed | AT5G10840.1 | 0.0 | 2008-06-29 |
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193083273 | AC212362 | CH201-81F2; ZMMBBc0081F02 | 4 | ctg169 | 79566200 | 196918 | LOC_Os08g44140.1 | 115511 | 119848 | transmembrane 9 superfamily protein member 2 precursor, putative, expressed | AT5G10840.1 | 0.0 | 2008-06-29 |
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193083273 | AC212362 | CH201-81F2; ZMMBBc0081F02 | 4 | ctg169 | 79566200 | 196918 | LOC_Os09g38530.1 | 115527 | 119848 | transmembrane 9 superfamily protein member 4, putative, expressed | AT5G10840.1 | 0.0 | 2008-06-29 |
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193083273 | AC212362 | CH201-81F2; ZMMBBc0081F02 | 4 | ctg169 | 79566200 | 196918 | LOC_Os06g44140.1 | 115553 | 119848 | transmembrane 9 superfamily protein member 4, putative, expressed | AT5G25100.1 | 0.0 | 2008-06-29 |
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193083273 | AC212362 | CH201-81F2; ZMMBBc0081F02 | 4 | ctg169 | 79566200 | 196918 | LOC_Os08g17370.1 | 118991 | 119530 | transmembrane 9 superfamily protein member 2 precursor, putative, expressed | AT5G25100.1 | 1e-79 | 2008-06-29 |
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193083272 | AC212227 | CH201-64A19; ZMMBBc0064A19 | 4 | ctg163 | 31727500 | 180711 | LOC_Os08g06380.1 | 97013 | 102635 | CSLF6 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed | AT5G16910.1 | 0.0 | 2008-06-29 |
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193083272 | AC212227 | CH201-64A19; ZMMBBc0064A19 | 4 | ctg163 | 31727500 | 180711 | LOC_Os08g06450.1 | 126774 | 128559 | choline-phosphate cytidylyltransferase B, putative, expressed | AT4G15130.1 | 3e-109 | 2008-06-29 |
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193083272 | AC212227 | CH201-64A19; ZMMBBc0064A19 | 4 | ctg163 | 31727500 | 180711 | LOC_Os08g06430.1 | 138001 | 140976 | mitochondrial NADH ubiquinone oxidoreductase 13kD-like subunit, putative, expressed | AT3G03070.1 | 3e-31 | 2008-06-29 |
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193083270 | AC212133 | CH201-57B14; ZMMBBc0057B14 | 4 | ctg188 | 200993100 | 175041 | LOC_Os08g37490.1 | 52450 | 53446 | 14-3-3-like protein A, putative, expressed | AT1G78300.1 | 1e-89 | 2008-06-29 |
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193083270 | AC212133 | CH201-57B14; ZMMBBc0057B14 | 4 | ctg188 | 200993100 | 175041 | LOC_Os04g38870.1 | 52453 | 53453 | 14-3-3-like protein GF14-6, putative, expressed | AT3G02520.1 | 2e-121 | 2008-06-29 |
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193083270 | AC212133 | CH201-57B14; ZMMBBc0057B14 | 4 | ctg188 | 200993100 | 175041 | LOC_Os02g36974.1 | 52453 | 53456 | 14-3-3-like protein B, putative, expressed | AT3G02520.1 | 1e-121 | 2008-06-29 |
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193083270 | AC212133 | CH201-57B14; ZMMBBc0057B14 | 4 |
