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SbGDB Downloads

SbGDB encompasses primary sequence data, including the most current genomic sequence, EST and cDNA sequences from GenBank, EST assemblies (PUTs) from PlantGDB, and microarray probes. The mapping of cDNA and EST sequences onto the genome as well as interpretations of the overall data are based on our own spliced alignment results.

The links below, mirrored on our FTP site, provide bzip2 archives of primary sequence used in the current version of SbGDB, as well as the MySQL tables that comprise the spliced alignment data and coordinates for all aligned sequences. For more information on the current datasets, their sources, and alignment methods, go to our Data & Methods page.

The sorghum genome assembly is still being refined and completed. SbGDB attempts to remain synchronized with the most recent release of the genome sequence or assembly (if any) and annotations. If you have any questions or comments about this genome browser, please make use of our feedback form.

NameLast modified dateFile Size
0README_error Sep 17 2010 1.91 KB
SBGDB161.sql.bz2 Sep 17 2010 132.81 MB
SBGDB161_error.sql.bz2 Oct 30 2007 117.43 MB
SBcdna161.bz2 Oct 31 2007 57.18 KB
SBcds.bz2 Apr 21 2010 10.67 MB
SBest161.bz2 Oct 31 2007 31.42 MB
SBgenome.bz2 Oct 31 2007 163.82 MB
SBgss.bz2 Oct 31 2007 33.67 MB
SBpep.bz2 Apr 21 2010 7.12 MB
SBput157.bz2 Oct 31 2007 8.64 MB
Sbicolor_79_annotation_info.txt.gz Mar 28 2011 677.8 KB
Sbicolor_79_cds.fa.gz Mar 28 2011 10.4 MB
Sbicolor_79_gene.gff3.gz Mar 28 2011 2.55 MB
Sbicolor_79_peptide.fa.gz Mar 28 2011 6.71 MB
Sbicolor_79_readme.txt Mar 28 2011 2.13 KB
Sbicolor_79_transcript.fa.gz Mar 28 2011 12.94 MB
Sorbi1_GeneModels_Sbi1_4_Sbi1_4.sql Feb 16 2009 42.16 MB
/previous_version directory
sbi1.fasta.gz Mar 28 2011 195.88 MB
sbi1_n_repeatMasker.fasta.gz Mar 28 2011 76.84 MB

NOTE: For convenient batch download of SbGDB data files, visit our FTP site

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