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OsGDB Downloads

OsGDB encompasses primary sequence data, including the most current genomic sequence, EST and cDNA sequences from GenBank, EST assemblies (PUTs) from PlantGDB, and microarray probes. The mapping of cDNA and EST sequences onto the genome as well as interpretations of the overall data are based on our own spliced alignment results.

The links below, mirrored on our FTP site, provide bzip2 archives of primary sequence used in the current version of OsGDB, as well as the MySQL tables that comprise the spliced alignment data and coordinates for all aligned sequences. For more information on the current datasets, their sources, and alignment methods, go to our Data & Methods page.

The rice genome assembly is still being refined and completed. OsGDB attempts to remain synchronized with the most recent release of the genome sequence or assembly (if any) and annotations. If you have any questions or comments about this genome browser, please make use of our feedback form.

NameLast modified dateFile Size
0README Feb 14 2012 1.17 KB
0README_error Sep 17 2010 1.91 KB
ATpepTAIR9 Sep 30 2009 17.33 MB
OSchrV7 Feb 22 2012 357.12 MB
OSprobe Sep 30 2009 32.49 MB
Oryza_sativa_Japonica_Group.mRNA.CDNA.fasta.bz2 Feb 22 2012 19.83 MB
Oryza_sativa_Japonica_Group.mRNA.EST.fasta.bz2 Feb 22 2012 122.18 MB
Oryza_sativa_Japonica_Group.mRNA.PUT.fasta.bz2 Feb 22 2012 28.85 MB
Osativa_193_annotation_info.txt.bz2 Feb 14 2012 663.52 KB
Osativa_193_cds.fa.bz2 Feb 14 2012 23.11 MB
Osativa_193_gene.gff3.bz2 Feb 14 2012 5.91 MB
Osativa_193_hardmasked.fa.gz Feb 14 2012 77.24 MB
Osativa_193_peptide.fa.bz2 Feb 14 2012 13.7 MB
Osativa_193_transcript.fa.bz2 Feb 14 2012 29.2 MB
gsq.tar.gz Nov 29 2010 1.26 GB
gsqdir.tar.gz Jul 21 2011 1.26 GB
/previous_version directory

NOTE: For convenient batch download of OsGDB data files, visit our FTP site

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