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BrGDB Downloads

BrGDB encompasses primary sequence data, including the most current genomic sequence, EST and cDNA sequences from GenBank, EST assemblies (PUTs) from PlantGDB, and microarray probes. The mapping of cDNA and EST sequences onto the genome as well as interpretations of the overall data are based on our own spliced alignment results.

The links below, mirrored on our FTP site, provide bzip2 archives of primary sequence used in the current version of BrGDB, as well as the MySQL tables that comprise the spliced alignment data and coordinates for all aligned sequences. For more information on the current datasets, their sources, and alignment methods, go to our Data & Methods page.

The Brassica rapa genome assembly is still being refined and completed. BrGDB attempts to remain synchronized with the most recent release of the genome sequence or assembly (if any) and annotations. If you have any questions or comments about this genome browser, please make use of our feedback form.

NameLast modified dateFile Size
BRGDB154.sql.bz2 Sep 13 2007 48.44 MB
BrGDBbac154.bz2 Jul 19 2006 1.62 MB
BrGDBcdna154.bz2 Jul 19 2006 94.58 KB
BrGDBest154.bz2 Jul 19 2006 2.82 MB
BrGDBput154.bz2 Jul 19 2006 1.85 MB
Brapa_197.fa.gz Feb 27 2012 80.62 MB
Brapa_197_annotation_info.txt.gz Feb 27 2012 954.48 KB
Brapa_197_cds.fa.gz Feb 27 2012 14.52 MB
Brapa_197_gene.gff3.gz Feb 27 2012 4.02 MB
Brapa_197_peptide.fa.gz Feb 27 2012 9.5 MB
Brapa_197_transcript.fa.gz Feb 27 2012 14.32 MB
/previous_version directory

NOTE: For convenient batch download of BrGDB data files, visit our FTP site

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