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SlGDB Annotated Protein Alignments

This table organizes splice-aligned proteins and their functional annotations, in linear order according to their start/end coordinates on a genomic segment. These alignments do not necessarily represent functional genes, and some genes will lack protein alignments. The search examples demonstrate how to search by Scaffold/BAC ID, Protein ID, or keyword. Click a Scaffold/BAC ID, Protein ID, Description, or Date to filter results according to that value. Click the GDB icon in column 1 to open a new window displaying the corresponding genomic region in Genome Context View. For more information, visit PlantGDB Help.

           
(search examples: 84371962; ATCG00690.1; Triacylglycerol Lip*) [ Export search result ] [ << Prev ][ Next >> ] (Showing 1 - 100 of 871 records / 207 BACs/Scaffolds)
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
Genome Context View View with CoGe 170377 AT4G00900.1 2289 8232 | Symbol: None | calcium-transporting ATPase 2, endoplasmic reticulum-type (ECA2), nearly identical to 2007-08-01
Genome Context View View with CoGe 854247 AT1G08830.1 5690 8338 | Symbol: None | superoxide dismutase (Cu-Zn) (SODCC) / copper/zinc superoxide dismutase (CSD1), identical 2007-08-01
Genome Context View View with CoGe 2246449 AT1G76490.1 11932 15991 | Symbol: None | similar to 3-hydroxy-3-methylglutaryl-CoA reductase 2 / HMG-CoA reductase 2 (HMGR2) 2007-08-01
Genome Context View View with CoGe 5901756 AT3G47950.1 1656 9880 | Symbol: None | ATPase, plasma membrane-type, putative / proton pump, putative, strong similarity to 2007-08-01
Genome Context View View with CoGe 5901756 AT2G24520.1 2007 9880 | Symbol: AHA5 | ATPase, plasma membrane-type, putative / proton pump, putative, strong similarity to 2007-08-01
Genome Context View View with CoGe 5901756 AT2G07560.1 2007 9880 | Symbol: AHA6 | ATPase, plasma membrane-type, putative / proton pump, putative, similar to P-type H(+)-transporting 2007-08-01
Genome Context View View with CoGe 5901756 AT2G18960.1 2007 9880 | Symbol: None | ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting 2007-08-01
Genome Context View View with CoGe 5901756 AT1G80660.1 2007 9880 | Symbol: None | ATPase 9, plasma membrane-type, putative / proton pump 9, putative / proton-exporting 2007-08-01
Genome Context View View with CoGe 5901756 AT3G42640.1 2007 9880 | Symbol: AHA8 | ATPase, plasma membrane-type, putative / proton pump, putative, strong similarity to 2007-08-01
Genome Context View View with CoGe 5901756 AT4G30190.1 2007 9880 | Symbol: None | ATPase 2, plasma membrane-type, putative / proton pump 2, putative / proton-exporting 2007-08-01
Genome Context View View with CoGe 5901756 AT5G57350.1 2007 9880 | Symbol: None | ATPase 3, plasma membrane-type / proton pump 3, nearly identical to SP:P20431 ATPase 2007-08-01
Genome Context View View with CoGe 5901756 AT3G60330.1 2008 9301 | Symbol: AHA7 | ATPase, plasma membrane-type, putative / proton pump, putative, similar to P-type H(+)-transporting 2007-08-01
Genome Context View View with CoGe 5901756 AT5G62670.1 2008 9880 | Symbol: AHA11 | ATPase, plasma membrane-type, putative / proton pump, putative, strong similarity to 2007-08-01
Genome Context View View with CoGe 9858768 AT3G57610.1 38046 42116 | Symbol: None | adenylosuccinate synthetase (ADSS), identical to adenylosuccinate synthetase, chloroplast 2007-08-01
Genome Context View View with CoGe 12383097 AT5G57550.1 58872 61937 | Symbol: None | xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan 2007-08-01
Genome Context View View with CoGe 15418708 AT2G31680.1 4779 9419 | Symbol: None | Ras-related GTP-binding protein, putative, similar to GTP-binding protein GI:289370 2007-08-01
Genome Context View View with CoGe 15418708 AT2G43130.1 4779 9419 | Symbol: None | Ras-related protein (ARA-4) / small GTP-binding protein, putative, identical to SP:P28187 2007-08-01
Genome Context View View with CoGe 15418708 AT3G07410.1 4779 9419 | Symbol: None | Ras-related GTP-binding family protein, contains Pfam profile: PF00071 Ras family | 2007-08-01
Genome Context View View with CoGe 15987769 ATCG00140.1 65158 66803 | Symbol: ATPH | ATPase III subunit | chrC:13262-13507 REVERSE | Aliases: ATPH 2007-08-01
Genome Context View View with CoGe 15987772 AT3G48730.1 86494 90143 | Symbol: None | glutamate-1-semialdehyde 2,1-aminomutase 2 (GSA 2) / glutamate-1-semialdehyde aminotransferase 2007-08-01
Genome Context View View with CoGe 15987772 AT5G63570.1 86494 90143 | Symbol: None | glutamate-1-semialdehyde 2,1-aminomutase 1 (GSA 1) / glutamate-1-semialdehyde aminotransferase 2007-08-01
Genome Context View View with CoGe 15987773 AT5G57550.1 58872 61937 | Symbol: None | xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan 2007-08-01
Genome Context View View with CoGe 19913114 AT3G11540.1 359 17157 | Symbol: None | gibberellin signal transduction protein (SPINDLY), identical to spindly GB:AAC49446 2007-08-01
Genome Context View View with CoGe 20805670 AT2G36160.1 18236 21969 | Symbol: None | 40S ribosomal protein S14 (RPS14A) | chr2:15176897-15178428 FORWARD | Aliases: F9C22.9, 2007-08-01
Genome Context View View with CoGe 20805670 AT3G11510.1 18236 21969 | Symbol: None | 40S ribosomal protein S14 (RPS14B), similar to 40S ribosomal protein S14 GB:P19950 (Zea 2007-08-01
Genome Context View View with CoGe 20805670 AT3G52580.1 18236 21020 | Symbol: None | 40S ribosomal protein S14 (RPS14C), ribosomal protein S14 -Zea mays,PIR2:A30097 | chr3:19514203-19515902 2007-08-01
Genome Context View View with CoGe 21166172 AT3G28860.1 25641 34261 | Symbol: PGP19 | Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 2007-08-01
Genome Context View View with CoGe 21166172 AT1G04820.1 40569 43608 | Symbol: None | tubulin alpha-2/alpha-4 chain (TUA4), nearly identical to SP:P29510 Tubulin alpha-2/alpha-4 2007-08-01
Genome Context View View with CoGe 21166172 AT4G14960.1 40569 43696 | Symbol: None | tubulin alpha-6 chain (TUA6), nearly identical to SP:P29511 Tubulin alpha-6 chain {Arabidopsis 2007-08-01
Genome Context View View with CoGe 21166172 AT5G19770.1 40569 43608 | Symbol: None | tubulin alpha-3/alpha-5 chain (TUA3), nearly identical to SP:P20363 Tubulin alpha-3/alpha-5 2007-08-01
Genome Context View View with CoGe 21166172 AT1G50010.1 40569 43608 | Symbol: None | tubulin alpha-2/alpha-4 chain (TUA2), identical to tubulin alpha-2/alpha-4 chain SP:P29510 2007-08-01
Genome Context View View with CoGe 21166172 AT5G19780.1 40569 43608 | Symbol: None | tubulin alpha-3/alpha-5 chain (TUA5), nearly identical to SP:P20363 Tubulin alpha-3/alpha-5 2007-08-01
Genome Context View View with CoGe 21166172 AT1G64740.1 40569 43608 | Symbol: None | tubulin alpha-1 chain (TUA1), nearly identical to SP:P11139 Tubulin alpha-1 chain {Arabidopsis 2007-08-01
Genome Context View View with CoGe 21166172 AT1G26830.1 50726 55717 | Symbol: CUL3 | Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo 2007-08-01
Genome Context View View with CoGe 21166172 AT1G69670.1 52644 55717 | Symbol: ATCUL3B | cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 2007-08-01
Genome Context View View with CoGe 21166172 AT3G28900.1 63274 66551 | Symbol: None | 60S ribosomal protein L34 (RPL34C), similar to 60S ribosomal protein L34 GB:P41098 (Nicotiana 2007-08-01
Genome Context View View with CoGe 21166172 AT1G26880.1 63274 66551 | Symbol: None | 60S ribosomal protein L34 (RPL34A), identical to GB:Q42351, location of EST 105E2T7, 2007-08-01
Genome Context View View with CoGe 21166172 AT1G69620.1 63280 66551 | Symbol: None | 60S ribosomal protein L34 (RPL34B), similar to SP:Q42351 from (Arabidopsis thaliana) 2007-08-01
Genome Context View View with CoGe 28141083 AT2G42810.1 642 11403 | Symbol: PAPP5 | Encodes a phytochrome-specific type 5 phosphatase. It dephosphorylates active Pfr-phytochromes. 2007-08-01
Genome Context View View with CoGe 28974076 AT3G14440.1 4947 8005 | Symbol: None | 9-cis-epoxycarotenoid dioxygenase, putative / neoxanthin cleavage enzyme, putative / 2007-08-01
Genome Context View View with CoGe 32442201 AT5G05580.1 8293 11589 | Symbol: None | omega-3 fatty acid desaturase, chloroplast, temperature-sensitive (FAD8), identical 2007-08-01
Genome Context View View with CoGe 33337946 AT2G22810.1 5454 8456 | Symbol: None | 1-aminocyclopropane-1-carboxylate synthase 4 / ACC synthase 4 (ACS4), identical to gi:940370 2007-08-01
Genome Context View View with CoGe 33337946 AT5G65800.1 5454 8456 | Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar 2007-08-01
Genome Context View View with CoGe 33337946 AT3G49700.1 5454 8456 | Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar 2007-08-01
Genome Context View View with CoGe 33337946 AT4G37770.1 5454 8456 | Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar 2007-08-01
Genome Context View View with CoGe 33337946 AT4G37760.1 8787 14299 | Symbol: None | squalene monooxygenase, putative / squalene epoxidase, putative, similar to SP:O65404 2007-08-01
Genome Context View View with CoGe 33337949 AT2G22810.1 2845 6357 | Symbol: None | 1-aminocyclopropane-1-carboxylate synthase 4 / ACC synthase 4 (ACS4), identical to gi:940370 2007-08-01
Genome Context View View with CoGe 33337949 AT4G37770.1 2845 6357 | Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar 2007-08-01
Genome Context View View with CoGe 33337949 AT5G65800.1 2845 6357 | Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar 2007-08-01
Genome Context View View with CoGe 62183955 AT5G62890.1 24258 34510 | Symbol: None | similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:At1g10540.1); 2007-08-01
Genome Context View View with CoGe 62733638 AT5G62890.1 24258 34510 | Symbol: None | similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:At1g10540.1); 2007-08-01
Genome Context View View with CoGe 81294720 AT4G13510.1 66089 70128 | Symbol: None | ammonium transporter 1, member 1 (AMT1.1), identical to SP:P54144 High affinity ammonium 2007-08-01
Genome Context View View with CoGe 81294720 AT3G24300.1 66123 70140 | Symbol: None | ammonium transporter 1, member 3 (AMT1.3), nearly identical to SP:Q9SQH9:AT13_ARATH 2007-08-01
Genome Context View View with CoGe 81294720 AT1G64780.1 66146 70143 | Symbol: None | ammonium transporter 1, member 2 (AMT1.2), nearly identical to SP:Q9ZPJ8 Ammonium transporter 2007-08-01
Genome Context View View with CoGe 81294720 AT4G28700.1 66146 70140 | Symbol: None | ammonium transporter, putative, similar to SP:O04161 Ammonium transporter 1, member 2007-08-01
Genome Context View View with CoGe 81295488 AT5G06600.1 26204 43757 | Symbol: None | ubiquitin-specific protease 12 (UBP12), almost identical to ubiquitin-specific protease 2007-08-01
Genome Context View View with CoGe 81295488 AT3G11910.1 26204 46013 | Symbol: None | ubiquitin-specific protease, putative, strong similarity to ubiquitin-specific protease 2007-08-01
Genome Context View View with CoGe 81295488 AT3G22980.1 70568 75042 | Symbol: None | elongation factor Tu family protein, similar to eukaryotic translation elongation factor 2007-08-01
Genome Context View View with CoGe 81295488 AT3G44110.1 106585 110992 | Symbol: None | DNAJ heat shock protein, putative (J3), identical to AtJ3 (Arabidopsis thaliana) GI:2641638, 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00020.1 -163 2298 | Symbol: PSBA | Encodes chlorophyll binding protein D1, a part of the photosystem II reaction center 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00070.1 6884 8469 | Symbol: PSBK | PSII K protein | chrC:7017-7202 FORWARD | Aliases: PSBK 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00080.1 7431 8941 | Symbol: PSBI | PSII I protein | chrC:7583-7693 FORWARD | Aliases: PSBI 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00120.1 9521 12444 | Symbol: ATPA | ATPase alpha subunit | chrC:9938-11461 REVERSE | Aliases: ATPA 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00130.1 11100 13740 | Symbol: ATPF | ATPase F subunit. | chrC:11529-12798 REVERSE | Aliases: ATPF 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00140.1 12739 14384 | Symbol: ATPH | ATPase III subunit | chrC:13262-13507 REVERSE | Aliases: ATPH 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00150.1 14142 16285 | Symbol: ATPI | ATPase a subunit | chrC:14021-14770 REVERSE | Aliases: ATPI 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00160.1 15122 17232 | Symbol: RPS2 | Chloroplast ribosomal protein S2 | chrC:15013-15723 REVERSE | Aliases: RPS2 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00190.1 23186 27798 | Symbol: RPOB | Chloroplast DNA-dependent RNA polymerase B subunit. | chrC:23111-26329 REVERSE | Aliases: 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00210.1 28441 29930 | Symbol: YCF6 | hypothetical protein | chrC:28089-28178 FORWARD | Aliases: YCF6 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00220.1 29638 31142 | Symbol: PSBM | PSII low MW protein | chrC:28707-28811 REVERSE | Aliases: PSBM 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00270.1 32882 35343 | Symbol: PSBD | PSII D2 protein | chrC:32711-33772 FORWARD | Aliases: PSBD 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00280.1 33891 36712 | Symbol: PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00300.1 36006 37594 | Symbol: YCF9 | encodes PsbZ, which is a subunit of photosystem II. In Chlamydomonas, this protein has 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00330.1 36968 38670 | Symbol: RPS14 | 30S chloroplast ribosomal protein S14 | chrC:36938-37240 REVERSE | Aliases: RPS14 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00340.1 37389 40993 | Symbol: PSAB | Encodes the D1 subunit of photosystem I and II reaction centers. | chrC:37375-39579 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00350.1 39619 43271 | Symbol: PSAA | Encodes psaA protein comprising the reaction center for photosystem I along with psaB 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00360.1 42630 45160 | Symbol: YCF3 | hypothetical protein | chrC:42584-43751 REVERSE | Aliases: YCF3 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00380.1 45906 47911 | Symbol: RPS4 | Chloroplast encoded ribosomal protein S4 | chrC:45223-45828 REVERSE | Aliases: RPS4 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00420.1 49371 51247 | Symbol: NDHJ | NADH dehydrogenase subunit | chrC:48677-49153 REVERSE | Aliases: NDHJ 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00430.1 49953 52030 | Symbol: PSBG | photosystem II G protein | chrC:49257-49934 REVERSE | Aliases: PSBG 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00440.1 50687 52449 | Symbol: NDHC | Encodes NADH dehydrogenase D3 subunit of the chloroplast NAD(P)H dehydrogenase complex 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00470.1 53280 55075 | Symbol: ATPE | ATPase epsilon subunit | chrC:52265-52663 REVERSE | Aliases: ATPE 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00480.1 53672 56568 | Symbol: ATPB | chloroplast-encoded gene for beta subunit of ATP synthase | chrC:52660-54156 REVERSE 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00490.1 55983 58825 | Symbol: RBCL | large subunit of RUBISCO. | chrC:54958-56397 FORWARD | Aliases: RBCL 2007-08-01
Genome Context View View with CoGe 84371962 ATMG00280.1 56487 58216 | Symbol: ORF110A | hypothetical protein | chrM:77819-78151 REVERSE | Aliases: ORF110A 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00510.1 60446 61956 | Symbol: PSAI | PSI I protein | chrC:59247-59360 FORWARD | Aliases: PSAI 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00520.1 61001 62955 | Symbol: YCF4 | hypothetical protein | chrC:59772-60326 FORWARD | Aliases: YCF4 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00540.1 63194 65556 | Symbol: PETA | Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00550.1 65225 66747 | Symbol: PSBJ | PSII component | chrC:63538-63660 REVERSE | Aliases: PSBJ 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00560.1 65472 66988 | Symbol: PSBL | PSII L protein | chrC:63804-63920 REVERSE | Aliases: PSBL 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00570.1 65611 67130 | Symbol: PSBF | PSII cytochrome b559 | chrC:63942-64061 REVERSE | Aliases: PSBF 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00580.1 65740 67391 | Symbol: PSBE | PSII cytochrome b559. There have been many speculations about the function of Cyt b559, 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00590.1 66989 68484 | Symbol: ORF31 | hypothetical protein | chrC:65712-65807 FORWARD | Aliases: ORF31 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00600.1 67268 68781 | Symbol: PETG | Cytochrome b6-f complex, subunit V. Disruption of homologous gene in Chlamydomonas results 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00630.1 68257 69791 | Symbol: PSAJ | PSI J protein | chrC:66929-67063 FORWARD | Aliases: PSAJ 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00640.1 68829 70429 | Symbol: RPL33 | encodes a chloroplast ribosomal protein L33, a constituent of the large subunit of 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00650.1 69220 70925 | Symbol: RPS18 | chloroplast-encoded ribosomal protein S18 | chrC:67917-68222 FORWARD | Aliases: RPS18 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00660.1 69769 71526 | Symbol: RPL20 | encodes a chloroplast ribosomal protein L20, a constituent of the large subunit of 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00680.1 73638 76564 | Symbol: PSBB | encodes for CP47, subunit of the photosystem II reaction center. | chrC:72371-73897 2007-08-01
Genome Context View View with CoGe 84371962 ATCG00690.1 75366 76864 | Symbol: PSBT | photosystem II protein T. Encodes the chlorophyll a apoprotein CP47. | chrC:74082-74183 2007-08-01

Database lookup time: 0.068172931671143 sec

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