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RcGDB Annotated Protein Alignments

This table organizes splice-aligned proteins and their functional annotations, in linear order according to their start/end coordinates on a genomic segment. These alignments do not necessarily represent functional genes, and some genes will lack protein alignments. The search examples demonstrate how to search by Scaffold/BAC ID, Protein ID, or keyword. Click a Scaffold/BAC ID, Protein ID, Description, or Date to filter results according to that value. Click the GDB icon in column 1 to open a new window displaying the corresponding genomic region in Genome Context View. For more information, visit PlantGDB Help.

           
(search examples: 27574; AT1G57660.1; Triacylglycerol Lip*) [ Export search result ] [ << Prev ][ Next >> ] (Showing 1 - 100 of 6606 records / 603 BACs/Scaffolds)
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
Genome Context View View with CoGe RcScaffold27383 Medtr5g087380.1 80315 82275 Expansin 45, endoglucanase-like chr05_pseudomolecule_IMGAG_V3 33731577-33729892 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27383 AT2G37640.1 80315 82282 EXP3 | chr2:15788077-15789812 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27383 AT2G28950.1 80315 82273 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) | chr2:12431840-12433482 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27383 AT2G39700.1 80315 82273 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) | chr2:16544246-16545434 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27394 AT1G15690.1 22500 27997 AVP1; ATPase/ hydrogen-translocating pyrophosphatase | chr1:5399115-5402185 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27394 Medtr8g122030.1 22506 27994 Inorganic H+ pyrophosphatase chr08_pseudomolecule_IMGAG_V3 28432748-28437579 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27394 AT1G60430.1 62340 64144 ARPC3 (actin-related protein C3); structural molecule | chr1:22264797-22265682 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27395 Medtr2g121640.1 26107 34497 WD40-like chr02_pseudomolecule_IMGAG_V3 28903505-28910946 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27428 AT3G52990.1 3712 12943 pyruvate kinase, putative | chr3:19649046-19652237 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27428 AT2G36580.1 3910 12943 pyruvate kinase, putative | chr2:15339253-15342781 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27436 Medtr4g141700.1 35262 37927 WD40-like chr04_pseudomolecule_IMGAG_V3 35057124-35053191 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27436 AT5G64730.1 35262 37927 transducin family protein / WD-40 repeat family protein | chr5:25873146-25875021 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27446 AT1G80560.1 68337 74021 3-isopropylmalate dehydrogenase, chloroplast, putative | chr1:30287833-30290126 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27448 AT5G15680.1 12149 26635 binding | chr5:5101188-5110793 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27451 Medtr5g085950.1 61726 62206 Gibberellin regulated protein chr05_pseudomolecule_IMGAG_V3 32924808-32923449 F EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27451 Medtr3g148350.1 96350 97016 Spc97/Spc98 chr03_pseudomolecule_IMGAG_V3 38609104-38607578 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27461 AC233679_3.1 4236 5192 G10 protein AC233679.1 10509-13156 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27461 Medtr4g132680.1 4236 5192 G10 protein chr04_pseudomolecule_IMGAG_V3 31596781-31599569 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27461 AT4G21110.1 4236 5192 G10 family protein | chr4:11267673-11268774 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27471 Medtr8g071020.1 93683 93865 Photosystem II protein PsbK chr08_pseudomolecule_IMGAG_V3 13965919-13965077 F EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27471 AT4G30220.1 139134 141286 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) | chr4:14803100-14804259 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27471 Medtr5g094460.1 160207 160938 Ribosomal protein L20, bacterial and organelle form chr05_pseudomolecule_IMGAG_V3 37376892-37379545 E 2010-11-05
Genome Context View View with CoGe RcScaffold27471 AT1G16740.1 160207 160950 ribosomal protein L20 family protein | chr1:5727773-5728950 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27496 AT5G03650.1 7216 17680 SBE2.2 (starch branching enzyme 2.2); 1,4-alpha-glucan branching enzyme | chr5:931924-937470 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27504 Medtr5g034960.1 89933 90495 Protein of unknown function DUF239, plant chr05_pseudomolecule_IMGAG_V3 14376061-14374818 E EGN_Mt090430 2010-11-05
Genome Context View View with CoGe RcScaffold27504 Medtr5g034920.1 109016 111699 lipase, related chr05_pseudomolecule_IMGAG_V3 14353595-14349674 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27504 Medtr5g034870.1 139330 143673 Clathrin adaptor complex, medium chain chr05_pseudomolecule_IMGAG_V3 14306119-14312478 F EGN_Mt090430 2010-11-05
Genome Context View View with CoGe RcScaffold27504 AT1G10730.1 139330 143673 clathrin adaptor complexes medium subunit family protein | chr1:3565463-3567779 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27504 AT1G60780.1 139330 143673 HAP13 (HAPLESS 13); protein binding | chr1:22369289-22371885 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27504 Medtr5g034500.1 200701 207000 Copper amine oxidase; ; ; chr05_pseudomolecule_IMGAG_V3 14175089-14179469 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27504 Medtr3g114690.1 200767 207068 Copper amine oxidase; ; ; chr03_pseudomolecule_IMGAG_V3 29102867-29095885 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27504 AT2G42490.1 200767 207053 copper amine oxidase, putative | chr2:17691600-17695526 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27504 Medtr3g114720.1 243676 244116 Ribosomal protein L15 chr03_pseudomolecule_IMGAG_V3 29111251-29110225 F EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27504 Medtr5g034460.1 243676 244116 Ribosomal protein L15 chr05_pseudomolecule_IMGAG_V3 14141500-14142209 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27504 AT1G23290.1 243676 244116 RPL27AB; structural constituent of ribosome | chr1:8263007-8263447 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27504 AT1G70600.1 243676 244116 structural constituent of ribosome | chr1:26621168-26621608 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27516 Medtr1g120920.1 15963 26372 Phosphoglucosamine mutase chr01_pseudomolecule_IMGAG_V3 26208412-26197427 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27516 Medtr7g121470.1 79869 82533 Major intrinsic protein chr07_pseudomolecule_IMGAG_V3 28607970-28606378 F EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27516 Medtr1g120820.1 79869 82533 Major intrinsic protein chr01_pseudomolecule_IMGAG_V3 26133532-26129937 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27516 AT2G37180.1 79869 82533 RD28 (RESPONSIVE TO DESICCATION 28); water channel | chr2:15617779-15618937 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27516 AT3G53420.1 79869 82533 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A); water channel | chr3:19803906-19805454 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27516 AT2G37170.1 79869 82533 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2); water channel | chr2:15613624-15614791 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27516 Medtr3g163530.1 79875 82533 Major intrinsic protein chr03_pseudomolecule_IMGAG_V3 42984188-42985232 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27516 AT4G35100.1 79875 82533 PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3); water channel | chr4:16708672-16709958 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27516 AT2G16850.1 79875 82533 PIP2;8 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;8); water channel | chr2:7301647-7303180 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27519 AT2G24270.1 49925 52975 ALDH11A3; 3-chloroallyl aldehyde dehydrogenase/ glyceraldehyde-3-phosphate dehydrogenase (NADP+) | chr2:10327325-10329601 2010-11-05
Genome Context View View with CoGe RcScaffold27519 Medtr1g017100.1 50390 52975 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative chr01_pseudomolecule_IMGAG_V3 3539384-3535281 2010-11-05
Genome Context View View with CoGe RcScaffold27519 Medtr8g145740.1 50390 52975 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative chr08_pseudomolecule_IMGAG_V3 35504116-35499346 2010-11-05
Genome Context View View with CoGe RcScaffold27524 Medtr5g067180.1 88742 90286 Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase chr05_pseudomolecule_IMGAG_V3 2010-11-05
Genome Context View View with CoGe RcScaffold27524 AC233660_47.1 88742 90286 Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase AC233660.2 190599-188614 2010-11-05
Genome Context View View with CoGe RcScaffold27524 AT1G68530.1 88742 90286 KCS6 (3-KETOACYL-COA SYNTHASE 6); catalytic/ transferase, transferring acyl groups other than amino-acyl 2010-11-05
Genome Context View View with CoGe RcScaffold27524 AT1G25450.1 88742 90274 KCS5 (3-KETOACYL-COA SYNTHASE 5); fatty acid elongase | chr1:8938679-8940282 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27524 Medtr5g067120.1 101465 103868 NAD-dependent epimerase/dehydratase chr05_pseudomolecule_IMGAG_V3 23783086-23786110 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27524 Medtr5g066370.1 121764 126201 Glycoside hydrolase, family 31 chr05_pseudomolecule_IMGAG_V3 23362203-23356275 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27526 AT4G39390.1 35952 42499 NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1); nucleotide-sugar transmembrane transporter | chr4:18316278-18317854 2010-11-05
Genome Context View View with CoGe RcScaffold27526 Medtr3g144540.1 35967 42499 Protein of unknown function DUF250 chr03_pseudomolecule_IMGAG_V3 37497468-37503483 F EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27526 Medtr1g124720.1 35967 42448 Protein of unknown function DUF250 chr01_pseudomolecule_IMGAG_V3 27259547-27255214 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27526 AT4G09810.1 35967 42499 transporter-related | chr4:6175415-6176892 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27526 AT1G34020.1 35967 42499 transporter-related | chr1:12367359-12368965 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27533 AT4G27260.1 32222 34169 WES1; indole-3-acetic acid amido synthetase | chr4:13653704-13655892 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27533 AT5G54510.1 32222 34169 DFL1 (DWARF IN LIGHT 1); indole-3-acetic acid amido synthetase | chr5:22131321-22133564 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27538 Medtr1g076860.1 62496 66181 Conserved hypothetical protein 730 chr01_pseudomolecule_IMGAG_V3 15479768-15476492 F EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27538 AC233683_4.1 62496 66149 Conserved hypothetical protein 730 AC233683.2 27372-22176 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27538 AT2G28305.1 62514 66181 unknown protein | chr2:12081186-12084307 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27538 AT2G37210.1 62975 66168 Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost 2010-11-05
Genome Context View View with CoGe RcScaffold27538 AT5G60700.1 76025 79225 glycosyltransferase family protein 2 | chr5:24402329-24404729 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27538 Medtr3g105020.1 152486 152707 Ubiquitin chr03_pseudomolecule_IMGAG_V3 26188483-26186102 H EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27538 AT5G42300.1 152486 152707 UBL5 (UBIQUITIN-LIKE PROTEIN 5) | chr5:16913611-16913832 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27538 AT3G45180.1 152486 152707 ubiquitin family protein | chr3:16538991-16539212 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27538 AT5G60690.1 178919 185593 REV (REVOLUTA); DNA binding / lipid binding / transcription factor | chr5:24397734-24401933 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27543 Medtr3g076720.1 112274 112434 hypothetical protein chr03_pseudomolecule_IMGAG_V3 17790531-17790974 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27543 Medtr4g023020.1 112277 112434 hypothetical protein chr04_pseudomolecule_IMGAG_V3 4812188-4811737 F EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27543 Medtr5g088210.1 113586 113828 Uncharacterized protein ORF91, putative chr05_pseudomolecule_IMGAG_V3 34183297-34182421 E EGN_Mt090430 2010-11-05
Genome Context View View with CoGe RcScaffold27543 Medtr4g023030.1 113586 113828 Uncharacterized protein ORF91, putative chr04_pseudomolecule_IMGAG_V3 4812193-4813480 F EGN_Mt090430 2010-11-05
Genome Context View View with CoGe RcScaffold27543 Medtr3g169370.1 113586 113828 Uncharacterized protein ORF91, putative chr03_pseudomolecule_IMGAG_V3 44191137-44193472 E EGN_Mt090430 2010-11-05
Genome Context View View with CoGe RcScaffold27543 AC233207_1.1 113586 113828 Uncharacterized protein ORF91, putative AC233207.1 19-1067 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27543 AC233207_3.1 114260 114466 , putative AC233207.1 1818-1376 F EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27543 Medtr5g088200.1 114324 114494 hypothetical protein chr05_pseudomolecule_IMGAG_V3 34182419-34181658 F EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27543 Medtr3g169400.1 115142 115689 hypothetical protein chr03_pseudomolecule_IMGAG_V3 44195203-44194498 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27543 Medtr5g088170.1 119242 119418 hypothetical protein chr05_pseudomolecule_IMGAG_V3 34178325-34177879 F EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27553 Medtr6g013670.1 106102 106299 Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup chr06_pseudomolecule_IMGAG_V3 2964789-2966426 2010-11-05
Genome Context View View with CoGe RcScaffold27553 AT3G10090.1 106102 106299 40S ribosomal protein S28 (RPS28A) | chr3:3108960-3109154 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27553 AT5G03850.1 106102 106299 40S ribosomal protein S28 (RPS28B) | chr5:1028542-1028736 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27553 AT5G64140.1 106102 106299 RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome | chr5:25667529-25667723 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27553 AC235488_12.1 115541 116448 Ribosomal protein S7 AC235488.1 52998-48408 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27553 AT3G11940.1 115618 116448 ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome | chr3:3778175-3779354 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27553 AT2G37270.1 115618 116448 ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome | chr2:15647883-15649042 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27561 AT2G22370.1 32016 33239 unknown protein | chr2:9501019-9502078 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27561 AT2G33430.1 66648 70442 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) | chr2:14162732-14164729 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27568 AT5G13840.1 28313 30779 FZR3 (FIZZY-RELATED 3); signal transducer | chr5:4468677-4470706 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27574 Medtr4g133950.1 9900 14431 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase chr04_pseudomolecule_IMGAG_V3 2010-11-05
Genome Context View View with CoGe RcScaffold27574 AC235488_34.1 9900 14431 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase AC235488.1 160871-167050 2010-11-05
Genome Context View View with CoGe RcScaffold27574 AT2G42500.1 9900 15088 PP2A-4; hydrolase/ protein serine/threonine phosphatase | chr2:17698099-17701226 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27574 AT3G58500.1 9900 15088 PP2A-3 (PROTEIN PHOSPHATASE 2A-3); protein serine/threonine phosphatase | chr3:21635503-21638911 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27574 AT2G42520.1 21479 27776 DEAD box RNA helicase, putative | chr2:17705382-17708744 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27574 AT3G58570.1 21521 27713 DEAD box RNA helicase, putative | chr3:21657099-21660352 FORWARD 2010-11-05
Genome Context View View with CoGe RcScaffold27574 AT3G58560.1 51694 57690 endonuclease/exonuclease/phosphatase family protein | chr3:21650880-21653896 REVERSE 2010-11-05
Genome Context View View with CoGe RcScaffold27574 AC235488_23.1 55153 57677 Endonuclease/exonuclease/phosphatase AC235488.1 111535-108488 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27574 AC235488_9.1 120201 121548 Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe RcScaffold27574 AT1G57660.1 120201 121548 60S ribosomal protein L21 (RPL21E) | chr1:21355567-21356364 FORWARD 2010-11-05

Database lookup time: 0.002633810043335 sec

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