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PpGDB Annotated Protein Alignments

This table organizes splice-aligned proteins and their functional annotations, in linear order according to their start/end coordinates on a genomic segment. These alignments do not necessarily represent functional genes, and some genes will lack protein alignments. The search examples demonstrate how to search by Scaffold/BAC ID, Protein ID, or keyword. Click a Scaffold/BAC ID, Protein ID, Description, or Date to filter results according to that value. Click the GDB icon in column 1 to open a new window displaying the corresponding genomic region in Genome Context View. For more information, visit PlantGDB Help.

           
(search examples: 2; LOC_Os04g49420.1; Triacylglycerol Lip*) [ Export search result ] [ << Prev ][ Next >> ] (Showing 1 - 100 of 6062 records / 384 BACs/Scaffolds)
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
Genome Context View View with CoGe PpScaffold1 AT2G05100.1 101135 103330 | Symbol: None | chlorophyll A-B binding protein / LHCII type II (LHCB2.1) (LHCB2.3), identical to Lhcb2 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT2G34430.1 101135 103334 | Symbol: None | chlorophyll A-B binding protein / LHCII type I (LHB1B1), identical to photosystem II 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT1G29910.1 101135 103348 | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A), 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT3G27690.1 101135 103330 | Symbol: None | chlorophyll A-B binding protein (LHCB2:4), nearly identical to Lhcb2 protein (Arabidopsis 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT1G29920.1 101135 103348 | Symbol: None | chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180, identical 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT2G34420.1 101135 103327 | Symbol: None | chlorophyll A-B binding protein / LHCII type I (LHB1B2), identical to GB:X64460 photosystem 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT5G54270.1 101135 103323 | Symbol: None | chlorophyll A-B binding protein / LHCII type III (LHCB3), identical to Lhcb3 protein 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT1G29930.1 101135 103348 | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT2G05070.1 101135 103330 | Symbol: None | chlorophyll A-B binding protein / LHCII type II (LHCB2.2), identical to Lhcb2 protein 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os01g41710.1 101138 103327 chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os01g52240.1 101138 103327 chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os09g17740.1 101138 103327 chlorophyll a-b binding protein 1, chloroplast precursor, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os03g39610.1 101138 103327 chlorophyll a-b binding protein, chloroplast precursor, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT1G75630.1 353932 356779 | Symbol: None | vacuolar ATP synthase 16 kDa proteolipid subunit 4 / V-ATPase 16 kDa proteolipid subunit 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT1G19910.1 353932 356776 | Symbol: None | vacuolar ATP synthase 16 kDa proteolipid subunit 2 / V-ATPase 16 kDa proteolipid subunit 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT4G34720.1 353932 356773 | Symbol: None | vacuolar ATP synthase 16 kDa proteolipid subunit 1 / V-ATPase 16 kDa proteolipid subunit 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT2G16510.1 353932 356773 | Symbol: None | vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT4G38920.1 353932 356773 | Symbol: None | vacuolar ATP synthase 16 kDa proteolipid subunit 3 / V-ATPase 16 kDa proteolipid subunit 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os05g01560.1 353935 356022 vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os02g34510.1 353935 356782 vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os11g06890.1 353935 356019 vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os01g73130.1 353935 356019 vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os01g61400.1 505612 509056 expressed protein 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os05g36270.1 1921774 1926673 fructose-1,6-bisphosphatase, cytosolic, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT1G43670.1 1921779 1925824 | Symbol: None | fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os01g64660.1 1921953 1926673 fructose-1,6-bisphosphatase, cytosolic, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os02g27760.1 1932354 1934937 40S ribosomal protein S15a, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os07g10720.1 1932354 1934937 40S ribosomal protein S15a, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT1G07770.1 1932354 1934940 | Symbol: None | 40S ribosomal protein S15A (RPS15aA), identical to GB:AAA61608 from (Arabidopsis thaliana) 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT5G59850.1 1932354 1934940 | Symbol: None | 40S ribosomal protein S15A (RPS15aF), cytoplasmic ribosomal protein S15a, Arabidopsis 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT3G46040.1 1932354 1934940 | Symbol: RPS15AD | Regulated by TCP20. | chr3:16925554-16926744 FORWARD | Aliases: F12M12.10, RPS15AD 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os04g36700.1 1978953 1982553 26S proteasome non-ATPase regulatory subunit 11, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT1G29150.1 1978980 1982556 | Symbol: None | 26S proteasome regulatory subunit, putative (RPN6), similar to 19S proteosome subunit 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os03g37950.1 1979304 1982553 26S proteasome non-ATPase regulatory subunit 11, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os01g48770.1 2198570 2200906 60S ribosomal protein L37a, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os05g48320.1 2198570 2200906 60S ribosomal protein L37a, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT3G60245.1 2198570 2200906 | Symbol: None | 60S ribosomal protein L37a (RPL37aC) | chr3:22279721-22280981 FORWARD | Aliases: None 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT3G10950.1 2198570 2200906 | Symbol: None | 60S ribosomal protein L37a (RPL37aB), similar to putative 60S ribosomal protein L37a 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT2G39390.1 2864969 2867358 | Symbol: None | 60S ribosomal protein L35 (RPL35B) | chr2:16457738-16458956 REVERSE | Aliases: F12L6.5, 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT5G02610.1 2864969 2867358 | Symbol: None | 60S ribosomal protein L35 (RPL35D), ribosomal protein L35- cytosolic, Arabidopsis thaliana, 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os06g04510.1 3035644 3039864 enolase 1, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os06g04510.1 3046324 3051563 enolase 1, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT1G01620.1 3081140 3083687 | Symbol: None | plasma membrane intrinsic protein 1C (PIP1C) / aquaporin PIP1.3 (PIP1.3) / transmembrane 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT2G45960.1 3081140 3083687 | Symbol: None | plasma membrane intrinsic protein 1B (PIP1B) / aquaporin PIP1.2 (PIP1.2) / transmembrane 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT3G61430.1 3081140 3083687 | Symbol: None | plasma membrane intrinsic protein 1A (PIP1A) / aquaporin PIP1.1 (PIP1.1) (AQ1), identical 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT4G00430.1 3081140 3083687 | Symbol: None | plasma membrane intrinsic protein, putative, identical to transmembrane protein GI:535780 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os03g39610.1 3704425 3706727 chlorophyll a-b binding protein, chloroplast precursor, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT1G29910.1 3704430 3706730 | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A), 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT1G29930.1 3704430 3706730 | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT2G34430.1 3704430 3706730 | Symbol: None | chlorophyll A-B binding protein / LHCII type I (LHB1B1), identical to photosystem II 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT1G29920.1 3704430 3706730 | Symbol: None | chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180, identical 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT2G34420.1 3704430 3706730 | Symbol: None | chlorophyll A-B binding protein / LHCII type I (LHB1B2), identical to GB:X64460 photosystem 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os07g37550.1 3704457 3706727 chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT3G27690.1 3704457 3706730 | Symbol: None | chlorophyll A-B binding protein (LHCB2:4), nearly identical to Lhcb2 protein (Arabidopsis 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os09g17740.1 3704529 3706727 chlorophyll a-b binding protein 1, chloroplast precursor, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os01g52240.1 3704529 3706727 chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT2G05100.1 3704532 3706730 | Symbol: None | chlorophyll A-B binding protein / LHCII type II (LHCB2.1) (LHCB2.3), identical to Lhcb2 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT2G05070.1 3704532 3706730 | Symbol: None | chlorophyll A-B binding protein / LHCII type II (LHCB2.2), identical to Lhcb2 protein 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os01g41710.1 3704547 3706727 chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os07g37550.1 3733616 3735937 chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os11g37640.1 4338721 4340750 ADP-ribosylation factor-like protein 5A, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 AT3G22950.1 4338721 4340675 | Symbol: ATARFC1 | Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor GB:P91924 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os10g32820.1 4822902 4825579 60S ribosomal protein L21, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold1 LOC_Os08g44680.1 4887721 4889719 photosystem I reaction center subunit II, chloroplast precursor, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT5G61410.1 65703 69489 | Symbol: EMB2728 | ribulose-phosphate 3-epimerase, chloroplast, putative / pentose-5-phosphate 3-epimerase, 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os03g07300.1 65837 69593 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os02g34510.1 558891 561649 vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT1G75630.1 558894 561652 | Symbol: None | vacuolar ATP synthase 16 kDa proteolipid subunit 4 / V-ATPase 16 kDa proteolipid subunit 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT1G19910.1 558897 561652 | Symbol: None | vacuolar ATP synthase 16 kDa proteolipid subunit 2 / V-ATPase 16 kDa proteolipid subunit 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT4G38920.1 558900 561652 | Symbol: None | vacuolar ATP synthase 16 kDa proteolipid subunit 3 / V-ATPase 16 kDa proteolipid subunit 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT4G34720.1 558900 561652 | Symbol: None | vacuolar ATP synthase 16 kDa proteolipid subunit 1 / V-ATPase 16 kDa proteolipid subunit 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT2G16510.1 558900 561652 | Symbol: None | vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os05g01560.1 559580 561649 vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os01g73130.1 559583 561649 vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os11g06890.1 559583 561649 vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os07g31370.1 632329 635117 ras-related protein Rab-6A, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os05g07700.1 987976 990428 60S ribosomal protein L10-3, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os11g11390.1 987976 990428 60S ribosomal protein L10-1, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os03g21470.1 987976 990428 60S ribosomal protein L10, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT1G66580.1 987976 990188 | Symbol: None | 60S ribosomal protein L10 (RPL10C), contains Pfam profile: PF00826: Ribosomal L10 | 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT1G16030.1 1082053 1085879 | Symbol: HSP70B | heat shock protein 70, putative / HSP70, putative, similar to heat shock protein hsp70 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT5G02500.1 1082053 1085879 | Symbol: None | heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1), identical to SP:P22953 Heat 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT3G12580.1 1082053 1085879 | Symbol: HSP70 | heat shock protein 70, putative / HSP70, putative, strong similarity to heat shock 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT3G09440.1 1082053 1085879 | Symbol: None | heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3), identical to SP:O65719 Heat 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT5G02490.1 1082053 1085879 | Symbol: None | heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2), identical to SP:P22954 Heat 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os11g47760.1 1082056 1085879 heat shock cognate 70 kDa protein 2, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os01g62290.1 1082056 1085876 heat shock cognate 70 kDa protein, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os03g16860.1 1082056 1085879 heat shock cognate 70 kDa protein 2, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os05g38530.1 1082056 1085876 heat shock cognate 70 kDa protein, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os03g16920.1 1082056 1085879 heat shock cognate 70 kDa protein, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os03g60620.1 1082056 1085879 heat shock cognate 70 kDa protein 2, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 AT1G56410.1 1082143 1085879 | Symbol: HSP70T-1 | heat shock cognate 70 kDa protein, putative / HSC70, putative / HSP70, putative, 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os12g38180.1 1082822 1084885 heat shock cognate 70 kDa protein 2, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os02g45940.1 1099656 1101364 histone H4, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os10g39410.1 1099656 1101364 histone H4, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os01g61920.1 1099656 1101364 histone H4, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os03g02780.1 1099656 1101364 histone H4, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os09g38020.1 1099656 1101364 histone H4, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os09g26340.1 1099656 1101364 histone H4, putative, expressed 2008-01-31
Genome Context View View with CoGe PpScaffold2 LOC_Os04g49420.1 1099656 1101364 histone H4, putative, expressed 2008-01-31

Database lookup time: 0.060114860534668 sec

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