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HvGDB Annotated Protein Alignments

This table organizes splice-aligned proteins and their functional annotations, in linear order according to their start/end coordinates on a genomic segment. These alignments do not necessarily represent functional genes, and some genes will lack protein alignments. The search examples demonstrate how to search by Scaffold/BAC ID, Protein ID, or keyword. Click a Scaffold/BAC ID, Protein ID, Description, or Date to filter results according to that value. Click the GDB icon in column 1 to open a new window displaying the corresponding genomic region in Genome Context View. For more information, visit PlantGDB Help.

           
(search examples: 118201020; LOC_Os01g58000.1; Triacylglycerol Lip*) [ Export search result ] [ << Prev ][ Next >> ] (Showing 1 - 100 of 147 records / 31 BACs/Scaffolds)
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
Genome Context View View with CoGe 793846 LOC_Os03g51690.1 2112 10666 Homeobox protein OSH1, putative, expressed 2007-04-20
Genome Context View View with CoGe 2894376 LOC_Os05g23600.1 16869 22888 Ribophorin I family protein, expressed 2007-04-20
Genome Context View View with CoGe 6469088 LOC_Os02g20360.1 272 4568 tyrosine/nicotianamine aminotransferases family protein, expressed 2007-04-20
Genome Context View View with CoGe 9623334 LOC_Os02g44080.1 43320 45679 aquaporin TIP-type RB7-5A, putative, expressed 2007-04-20
Genome Context View View with CoGe 9623334 LOC_Os04g46490.1 44668 47114 Major intrinsic protein, expressed 2007-04-20
Genome Context View View with CoGe 9623334 LOC_Os02g33180.1 57866 60954 Rar1, putative, expressed 2007-04-20
Genome Context View View with CoGe 12278521 LOC_Os03g54760.1 1911 6257 Mitochondrial carrier protein, putative, expressed 2007-04-20
Genome Context View View with CoGe 12278521 LOC_Os03g54770.1 29422 35097 Cleavage stimulation factor, 50 kDa subunit, putative, expressed 2007-04-20
Genome Context View View with CoGe 12278521 LOC_Os03g54780.1 64187 73761 Serine/threonine kinase, putative, expressed 2007-04-20
Genome Context View View with CoGe 12278521 LOC_Os03g54790.1 75001 81616 ABC transporter transmembrane region family protein, expressed 2007-04-20
Genome Context View View with CoGe 12278521 LOC_Os03g54880.1 79974 81853 ATP-binding cassette sub-family B member 8, mitochondrial precursor, putative 2007-04-20
Genome Context View View with CoGe 13752406 LOC_Os03g52239.1 2101 13380 homeodomain protein JUBEL1, putative, expressed 2007-04-20
Genome Context View View with CoGe 14588572 LOC_Os03g27280.1 1352 11471 Abscisic acid-inducible protein kinase, putative, expressed 2007-04-20
Genome Context View View with CoGe 14588572 LOC_Os07g42940.1 1352 11471 Serine/threonine-protein kinase SAPK2, putative, expressed 2007-04-20
Genome Context View View with CoGe 18652401 LOC_Os02g35670.1 2251 3895 hypothetical protein 2007-04-20
Genome Context View View with CoGe 18652401 LOC_Os06g04200.1 72164 76245 Granule-bound starch synthase 1, chloroplast precursor, putative, expressed 2007-04-20
Genome Context View View with CoGe 18652401 LOC_Os04g34100.1 77234 79821 expressed protein 2007-04-20
Genome Context View View with CoGe 20152970 LOC_Os02g47880.1 38076 42453 Kinesin light chain, putative, expressed 2007-04-20
Genome Context View View with CoGe 20152972 LOC_Os04g56360.1 1243 4336 Protein kinase domain containing protein 2007-04-20
Genome Context View View with CoGe 20513849 LOC_Os01g74030.1 14673 22180 BPM, putative, expressed 2007-04-20
Genome Context View View with CoGe 20513849 LOC_Os05g01910.1 14673 22180 BPM, putative, expressed 2007-04-20
Genome Context View View with CoGe 20513849 LOC_Os12g36210.1 219910 221541 Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed 2007-04-20
Genome Context View View with CoGe 30421164 LOC_Os05g41950.1 64751 67894 Serine/threonine-protein kinase RLCKVII, putative, expressed 2007-04-20
Genome Context View View with CoGe 31296707 LOC_Os03g51080.1 85543 89812 Glutamate decarboxylase, putative, expressed 2007-04-20
Genome Context View View with CoGe 31296707 LOC_Os03g13300.1 85558 89812 Glutamate decarboxylase, putative, expressed 2007-04-20
Genome Context View View with CoGe 31296707 LOC_Os04g37460.1 85558 89806 Glutamate decarboxylase, putative, expressed 2007-04-20
Genome Context View View with CoGe 31296707 LOC_Os08g36320.1 85952 89812 Glutamate decarboxylase, putative, expressed 2007-04-20
Genome Context View View with CoGe 31296707 LOC_Os03g13220.1 154550 158524 expressed protein 2007-04-20
Genome Context View View with CoGe 34481848 LOC_Os06g44230.1 -453 9532 DNA-directed RNA polymerase 3, chloroplast precursor, putative, expressed 2007-04-20
Genome Context View View with CoGe 45357044 LOC_Os03g50340.1 248 6449 Coatomer alpha subunit, putative, expressed 2007-04-20
Genome Context View View with CoGe 45357044 LOC_Os03g50350.1 248 6449 Coatomer alpha subunit, putative, expressed 2007-04-20
Genome Context View View with CoGe 45357044 LOC_Os09g04110.1 248 6449 Coatomer alpha subunit, putative, expressed 2007-04-20
Genome Context View View with CoGe 45357044 LOC_Os03g01210.1 50152 54798 Protein of unknown function, DUF614 containing protein, expressed 2007-04-20
Genome Context View View with CoGe 45357044 LOC_Os03g01200.1 67921 83872 SNF2P, putative, expressed 2007-04-20
Genome Context View View with CoGe 55276709 LOC_Os12g44180.1 27539 31190 expressed protein 2007-04-20
Genome Context View View with CoGe 55276709 LOC_Os07g22850.1 124124 126939 Chalcone and stilbene synthases, N-terminal domain containing protein, expressed 2007-04-20
Genome Context View View with CoGe 55276710 LOC_Os12g44250.1 8958 11527 Synaptobrevin family protein, expressed 2007-04-20
Genome Context View View with CoGe 55276710 LOC_Os12g44240.1 11031 14816 BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed 2007-04-20
Genome Context View View with CoGe 55276710 LOC_Os12g44230.1 112171 116664 HIPL1 protein precursor, putative, expressed 2007-04-20
Genome Context View View with CoGe 55792419 LOC_Os03g51080.1 -543 3723 Glutamate decarboxylase, putative, expressed 2007-04-20
Genome Context View View with CoGe 55792419 LOC_Os03g13300.1 -528 3723 Glutamate decarboxylase, putative, expressed 2007-04-20
Genome Context View View with CoGe 55792419 LOC_Os04g37460.1 -528 3717 Glutamate decarboxylase, putative, expressed 2007-04-20
Genome Context View View with CoGe 55792419 LOC_Os08g36320.1 -134 3723 Glutamate decarboxylase, putative, expressed 2007-04-20
Genome Context View View with CoGe 55792421 LOC_Os03g13220.1 110920 114893 expressed protein 2007-04-20
Genome Context View View with CoGe 56155206 LOC_Os01g21180.1 106890 111052 MLL, putative, expressed 2007-04-20
Genome Context View View with CoGe 58866600 LOC_Os03g54160.1 1439 17535 Floral homeotic protein APETALA1, putative, expressed 2007-04-20
Genome Context View View with CoGe 58866603 LOC_Os03g54160.1 1440 12324 Floral homeotic protein APETALA1, putative, expressed 2007-04-20
Genome Context View View with CoGe 59804989 LOC_Os03g54160.1 671 11554 Floral homeotic protein APETALA1, putative, expressed 2007-04-20
Genome Context View View with CoGe 62868802 LOC_Os01g71000.1 79920 83757 Serine/threonine-protein kinase RLCKVII, putative, expressed 2007-04-20
Genome Context View View with CoGe 62868802 LOC_Os07g49470.1 79920 83721 Serine/threonine-protein kinase RLCKVII, putative, expressed 2007-04-20
Genome Context View View with CoGe 73913046 LOC_Os05g46000.1 -699 2248 Ras-related protein Rab7, putative, expressed 2007-04-20
Genome Context View View with CoGe 73913046 LOC_Os05g45960.1 4395 11458 aldehyde dehydrogenase, putative, expressed 2007-04-20
Genome Context View View with CoGe 82466446 LOC_Os03g54160.1 52391 63275 Floral homeotic protein APETALA1, putative, expressed 2007-04-20
Genome Context View View with CoGe 82466446 LOC_Os03g54100.1 91891 94444 calcium-activated outward-rectifying potassium channel 5,chloroplast precursor, putative, expressed 2007-04-20
Genome Context View View with CoGe 117670142 LOC_Os01g70950.1 4142 8738 sperm protein SSP411, putative, expressed 2007-04-20
Genome Context View View with CoGe 117670142 LOC_Os01g70940.1 8791 14279 Potassium transporter 7, putative, expressed 2007-04-20
Genome Context View View with CoGe 117670148 LOC_Os01g16240.1 8288 11578 Calmodulin, putative, expressed 2007-04-20
Genome Context View View with CoGe 117670148 LOC_Os05g41210.1 8288 11578 Calmodulin, putative, expressed 2007-04-20
Genome Context View View with CoGe 117670148 LOC_Os01g17190.1 8288 11578 Calmodulin, putative, expressed 2007-04-20
Genome Context View View with CoGe 117670148 LOC_Os03g20370.1 8288 11578 Calmodulin, putative, expressed 2007-04-20
Genome Context View View with CoGe 117670148 LOC_Os01g59530.1 8288 11685 Calmodulin, putative, expressed 2007-04-20
Genome Context View View with CoGe 117670148 LOC_Os07g48780.1 8288 11578 Calmodulin, putative, expressed 2007-04-20
Genome Context View View with CoGe 117670152 LOC_Os01g59600.1 12696 17245 Proteasome subunit alpha type 3, putative, expressed 2007-04-20
Genome Context View View with CoGe 117670152 LOC_Os05g41180.1 12696 17245 Proteasome subunit alpha type 3, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os08g35420.1 -81 2380 Photosystem Q, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g21200.1 -81 2380 Photosystem Q, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os04g16770.1 -81 2380 Photosystem Q, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os04g16730.1 137 2380 Photosystem Q, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g39880.1 206 2602 Photosystem Q, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os01g58040.1 8459 12289 Photosystem II D2 protein, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os02g24630.1 8459 10920 Photosystem II D2 protein, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g41689.1 8459 10920 Photosystem II D2 protein, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os04g16800.1 8459 12289 Photosystem II D2 protein, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g21210.1 8554 10920 Photosystem II D2 protein, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os05g22830.1 19070 22136 DNA-directed RNA polymerase beta chain, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os04g16820.1 19411 24017 DNA-directed RNA polymerase beta chain, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g21220.1 19939 29994 DNA-directed RNA polymerase beta chain, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os02g24620.1 20176 24017 DNA-directed RNA polymerase beta chain, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os05g22860.1 21391 24017 DNA-directed RNA polymerase beta chain, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os02g24610.1 26653 29851 DNA-directed RNA polymerase beta chain, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os04g16819.1 28921 30773 DNA-directed RNA polymerase beta chain, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g38292.1 30648 32791 Chloroplast ATP synthase a chain precursor, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g21230.1 31959 33787 ATP synthase subunit C family protein 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os04g16740.1 34136 37320 ATP synthase alpha chain, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g38270.1 34136 37044 ATP synthase alpha chain, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g21240.1 34136 37320 ATP synthase alpha chain, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os09g08880.1 34817 37078 ATP synthase alpha chain, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os03g48471.1 35075 37188 ATP synthase alpha chain, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os04g16750.1 36698 38454 Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g38248.1 36698 38976 Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os04g16760.1 38928 42580 Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g38229.1 38928 42580 Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g21250.1 38928 42580 Photosystem I P700 chlorophyll a apoprotein A1, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g38210.1 48669 50494 NAD, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os06g22010.1 48669 50890 NAD, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os10g21260.1 48669 50494 NAD, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os12g19420.1 48669 50494 NAD, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os01g58030.1 48669 50500 NAD, putative, expressed 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os06g39740.1 51550 54856 ATP synthase beta chain, putative 2007-04-20
Genome Context View View with CoGe 118201020 LOC_Os01g58000.1 51550 53363 ATP synthase epsilon chain, putative, expressed 2007-04-20

Database lookup time: 0.040465116500854 sec

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