• Anonymous
  • Login

Search:  Display ?

Segment ID:  Start:  End:

SiGDB v.0 Loci/Annotations  ?

No filters | 35471 records Download .csv Atom Feed Subscribe
 Pages:
# / Page:

Page:

Showing: 1 - 100 out of 35471 records
 Search: Select column, enter value, click "Go".
Find: ?

 Filters: Select a filter, click "Go". Filters & Search are additive ("AND")
Annotation Project: ?
[view project information page]
yrGATE Status: ?
Coverage Score: ?
Integrity Score: ?
Link to this page
Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
(click to view)
Annotate it!
Si016158m.g 1 10197
13618
3.4 1 f 1 PF08263,PF00560,PF00069,PF07714 PTHR23258 KOG1187 AT3G47570.1 Leucine-ri... 0
Si018185m.g 1 55108
57492
2.4 4 f 1 PF11460 AT3G17930.1 LOC_Os01g59080.1 expressed protein... 0.4 0.33
Si017130m.g 1 74818
77420
2.6 2 f 2 PF00097 PTHR23012 AT5G60580.1 RING/U-box superfamily protein LOC_Os06g2... 0.33 0.2
Si016761m.g 1 76162
82041
5.9 10 r 2 PF00085 PTHR18929 KOG0190 5.3.4.1 K09580 AT5G60640.1 ATPDI2,ATPDIL1-4,PDI2,... 0.8 0.89
Si020621m.g 1 82225
86187
4 10 f 1 PF00515,PF07719 PTHR22904 KOG1308 AT3G17880.1 ATHIP2,ATTDX,HIP,TDX tetrat... 0.94 0.96
Si018367m.g 1 87278
87927
0.6 1 f 1 PF03168 AT5G53730.1 Late embryogenesis abundant (LEA) hydroxyproline-r... 0
Si020212m.g 1 88174
89200
1 4 f 1 LOC_Os07g02910.1 OsFBL33 - F-box domain and LRR containing protein, expres... 0
Si019109m.g 1 91004
92146
1.1 0 f 1 PF03171 PTHR10209 KOG0143 1.14.11.19 K05277 AT4G22880.1 ANS,LDOX,TDS4,TT18 ... 0
Si019863m.g 1 93571
94596
1 0 r 1 LOC_Os02g01080.1 expressed protein... 0
Si019050m.g 1 101989
102420
0.4 0 r 1 PF00096 AT3G23130.1 FLO10,FON1,SUP C2H2 and C2HC zinc fingers superfami... 0
Si019749m.g 1 109759
110626
0.9 1 f 1 AT5G13620.1 LOC_Os10g10320.1 expressed protein... 0
Si016787m.g 1 110820
114863
4 11 r 1 PF01490 PTHR22950 KOG1303 AT2G39130.1 Transmembrane amino acid transport... 0.93 0.95
Si017542m.g 1 118883
120843
2 1 f 1 PF00657 PTHR22835:SF27 AT1G75900.1 GDSL-like Lipase/Acylhydrolase super... 0
Si017480m.g 1 120962
123970
3 9 r 1 PF00389,PF02826 PTHR10996 KOG0069 AT1G68010.1 ATHPR1,HPR hydroxypyruvate ... 0.91 0.95
Si018518m.g 1 124098
125815
1.7 1 r 1 PF03931,PF01466 PTHR11165 KOG1724 K03094 AT5G42190.1 ASK2,SKP1B E3 ubiquit... 0.44 0.2
Si016079m.g 1 126273
134923
8.7 17 r 1 PF00514,PF02985,PF00632 PTHR11254 KOG0170 6.3.2.19 K10590 AT4G38600.1 KAK,U... 0.55 0.57
Si020367m.g 1 135769
136391
0.6 2 r 1 ... 0.99 0.97
Si016340m.g 1 136837
143970
7.1 19 r 1 PF00225 PTHR16012 KOG0242 AT1G20060.1 ATP binding microtubule motor fami... 0.62 0.47
Si019569m.g 1 145211
146466
1.3 2 f 1 PF01190 AT2G16630.1 Pollen Ole e 1 allergen and extensin family protei... 0.7 0.21
Si020089m.g 1 147342
148241
0.9 0 r 1 PF00462 PTHR10168 KOG2824 AT4G10630.1 Glutaredoxin family protein LOC_Os... 0
Si018637m.g 1 153843
157806
4 7 f 5 PF00581 KOG1530 AT5G66170.3 STR18 sulfurtransferase 18 LOC_Os12g24020.2 ... 0.6 0.75
Si016942m.g 1 157892
160818
2.9 7 r 1 PF00333,PF03719 PTHR13718 KOG2646 AT1G64880.1 Ribosomal protein S5 famil... 0.49 0.71
Si018529m.g 1 161039
163461
2.4 2 f 1 PF00023 PTHR18958 KOG4214 AT5G61230.1 Ankyrin repeat family protein LOC_... 0.79 0.94
Si018997m.g 1 162468
163461
1 0 r 1 ... 0.56 0.5
Si018681m.g 1 163959
166013
2.1 3 r 1 PF01423 PTHR23338 KOG3172 AT1G20580.1 Small nuclear ribonucleoprotein fa... 0
Si016426m.g 1 170727
175345
4.6 19 f 1 PF01852,PF07059 PTHR12136 AT5G45560.1 Pleckstrin homology (PH) domain-c... 0
Si016700m.g 1 179729
184974
5.2 14 f 2 PF00118 PTHR11353 KOG0356 AT3G13470.1 TCP-1/cpn60 chaperonin family prot... 0.83 0.85
Si016297m.g 1 183949
189251
5.3 8 r 1 PF00503 PTHR10218 KOG0082 AT1G31930.1 XLG3 extra-large GTP-binding protei... 0.74 0.92
Si016141m.g 1 192778
208071
15.3 34 f 2 PF04563,PF04561,PF04565,PF04566,PF04567,PF00562,PF04560 PTHR20856 KOG0215 2... 0.49 0.5
Si020139m.g 1 208091
208552
0.5 0 r 1 PF04043 AT5G46960.1 Plant invertase/pectin methylesterase inhibitor su... 0
Si020505m.g 1 208556
208834
0.3 0 f 1 ... 0
Si019263m.g 1 209044
209673
0.6 0 r 1 PF04043 AT5G46930.1 Plant invertase/pectin methylesterase inhibitor su... 0
Si017606m.g 1 210760
212873
2.1 4 r 1 PF00892 AT3G30340.1 nodulin MtN21 /EamA-like transporter family protei... 0
Si018430m.g 1 213901
215490
1.6 2 r 2 PF00347 PTHR11655 KOG3255 K02940 AT1G33140.1 PGY2 Ribosomal protein L6 fam... 0.85 0.91
Si017591m.g 1 215930
217883
2 3 r 2 PF00175 PTHR19384 AT5G66190.1 ATLFNR1,FNR1 ferredoxin-NADP(+)-oxidoreduc... 0.71 0.9
Si017621m.g 1 218735
220279
1.5 5 f 1 PF00892 AT3G30340.1 nodulin MtN21 /EamA-like transporter family protei... 0.67 0.68
Si018042m.g 1 224928
225812
0.9 1 r 1 ... 0
Si019985m.g 1 229378
236527
7.1 7 f 1 PF00319,PF01486 PTHR11945 KOG0014 AT2G45660.1 AGL20,ATSOC1,SOC1 AGAMOUS-l... 0.67 0.46
Si020469m.g 1 230957
231428
0.5 0 f 1 ... 0
Si016825m.g 1 262053
265876
3.8 12 f 1 PTHR11089 KOG1249 1.14.13.39 K13427 AT3G47450.2 ATNOA1,ATNOS1,NOA1,NOS1,RIF... 0.73 0.82
Si018031m.g 1 266186
269359
3.2 8 f 1 AT2G45060.1 Uncharacterised conserved protein UCP022280 LOC_Os02g01450.1 ... 0.42 0.43
Si018291m.g 1 269573
271738
2.2 7 f 3 PF00076 PTHR20957 AT2G27790.1 RNA-binding (RRM/RBD/RNP motifs) family p... 0.13 0.28
Si016087m.g 1 272614
279528
6.9 13 f 2 PTHR13402 AT5G47490.1 RGPR-related LOC_Os02g01490.1 expressed protein... 0.41 0.41
Si016850m.g 1 280197
286802
6.6 17 f 1 PF00364,PF02817,PF00198 PTHR23151 KOG0557 2.3.1.12 K00627 AT1G54220.1 Dihy... 0.78 0.79
Si020440m.g 1 282474
282896
0.4 0 f 1 ... 0
Si017639m.g 1 287952
290424
2.5 1 f 1 PF00056,PF02866 PTHR11540 KOG1495 1.1.1.27 K00016 AT4G17260.1 Lactate/mala... 0.41 0.8
Si019533m.g 1 293768
294826
1.1 0 f 1 PF00056,PF02866 PTHR11540 KOG1495 1.1.1.27 K00016 AT4G17260.1 Lactate/mala... 0.37 0.71
Si016881m.g 1 296071
299282
3.2 3 f 1 AT5G62390.1 ATBAG7,BAG7 BCL-2-associated athanogene 7 LOC_Os02g01520.1 IQ ... 0.58 0.62
Si020653m.g 1 303840
304289
0.4 0 r 1 ... 0
Si020514m.g 1 304985
305386
0.4 0 r 1 ... 0
Si016887m.g 1 309764
313288
3.5 2 f 1 PF00251,PF08244 KOG0228 AT1G62660.1 Glycosyl hydrolases family 32 prote... 0.79 0.94
Si019781m.g 1 323951
325186
1.2 2 f 1 PF07762 LOC_Os01g08650.1 expressed protein... 0
Si019264m.g 1 328769
329544
0.8 1 r 1 LOC_Os10g36770.1 expressed protein... 0
Si019874m.g 1 331560
332368
0.8 1 r 1 PF00097 PTHR22764 AT5G47610.1 RING/U-box superfamily protein LOC_Os04g3... 0
Si018045m.g 1 343207
346471
3.3 6 r 2 PF04751 PTHR16012:SF56 AT4G24175.1 LOC_Os04g24410.1 kinesin heavy cha... 0.67 0.69
Si017361m.g 1 347631
351455
3.8 6 f 1 PF07910 KOG4696 AT5G24680.1 Peptidase C78, ubiquitin fold modifier-spec... 0 0.05
Si020531m.g 1 350736
351024
0.3 0 f 1 ... 1 0.49
Si017635m.g 1 352587
356810
4.2 9 f 1 PF07851 PTHR21433 KOG4758 AT1G33230.1 TMPIT-like protein LOC_Os02g01720.... 0.84 0.91
Si017456m.g 1 357554
359628
2.1 1 r 1 PF00069,PF07714 PTHR23258 KOG1187 AT1G33260.1 Protein kinase superfamily... 0
Si016063m.g 1 366658
375263
8.6 3 f 1 PF00270,PF00271,PF02889,PF04851 PTHR11752 KOG0951 3.6.4.13 K12854 AT1G20960... 0.62 0.64
Si017818m.g 1 384615
386665
2.1 3 f 1 ... 0
Si019160m.g 1 387730
389118
1.4 0 r 1 PF05633 AT1G63930.1 ROH1 from the Czech 'roh' meaning 'corner' LOC_Os02... 0.47 0.74
Si020478m.g 1 391162
391636
0.5 0 r 1 ... 0
Si016268m.g 1 392156
397951
5.8 12 r 1 PF02373 PTHR12549 AT1G62310.1 transcription factor jumonji (jmjC) domai... 0
Si016699m.g 1 398780
401904
3.1 2 r 1 PF07719,PF07721,PF00515 PTHR19959 KOG1840 AT4G10840.1 Tetratricopeptide ... 0.66 0.55
Si017406m.g 1 406824
412429
5.6 5 f 2 ... 0
Si020218m.g 1 417815
421143
3.3 3 r 1 PF00931 PTHR23155 KOG4658 AT5G35450.1 Disease resistance protein (CC-NBS... 0
Si016712m.g 1 421957
425592
3.6 8 f 1 AT1G28530.2 LOC_Os02g01970.1 expressed protein... 0
Si020439m.g 1 425968
426376
0.4 0 r 1 ... 0
Si016931m.g 1 436433
440598
4.2 8 r 1 AT1G28530.2 LOC_Os02g01970.1 expressed protein... 0
Si019113m.g 1 442495
445492
3 6 f 1 PF00931 PTHR23155:SF28 KOG4658 AT3G46530.1 RPP13 NB-ARC domain-containing... 0
Si019213m.g 1 465460
467800
2.3 3 r 1 PF00643,PF06203 AT3G21880.1 B-box type zinc finger protein with CCT do... 0
Si019954m.g 1 469413
471548
2.1 1 r 1 PF08263,PF00560 PTHR23258 KOG0472 AT1G72300.1 Leucine-rich receptor-like... 0
Si019526m.g 1 477019
479572
2.6 3 r 1 PF00560 PTHR23258 KOG0472 AT1G72300.1 Leucine-rich receptor-like protein... 0
Si020472m.g 1 480404
481198
0.8 0 f 1 ... 0
Si019751m.g 1 482961
486002
3 2 r 1 PF08263,PF00560 PTHR23258 KOG0472 AT1G72300.1 Leucine-rich receptor-like... 0
Si016973m.g 1 488910
490951
2 0 f 1 PTHR19383 4.1.2.- K10528 AT4G15440.1 CYP74B2,HPL1 hydroperoxide lyase 1 LO... 0
Si017987m.g 1 520710
522991
2.3 2 r 1 PF00249 PTHR10641 KOG0048 AT5G11510.1 AtMYB3R4,MYB3R-4 myb domain protein... 0
Si020517m.g 1 522242
522477
0.2 0 f 1 ... 0
Si017903m.g 1 525324
527303
2 2 r 1 PF00249 PTHR10641 KOG0048 AT5G11510.1 AtMYB3R4,MYB3R-4 myb domain protein... 0.67 0.25
Si020627m.g 1 527370
529998
2.6 4 r 1 PTHR10641:SF37 AT4G32730.2 ATMYB3R-1,ATMYB3R1,MYB3R-1,MYB3R1,PC-MYB1 Hom... 0.87 0.77
Si018889m.g 1 552954
556095
3.1 2 f 2 PTHR10795:SF17 LOC_Os02g17150.1 OsSub18 - Putative Subtilisin homolo... 0
Si018882m.g 1 555220
556095
0.9 0 r 1 ... 0
Si016437m.g 1 566579
570198
3.6 9 f 1 PF05922,PF00082,PF02225 PTHR10795 AT4G10520.1 Subtilase family protein ... 0.2 0.12
Si018581m.g 1 573180
574287
1.1 2 f 1 PF01221 PTHR11886 KOG3430 AT1G52240.2 ATROPGEF11,PIRF1,ROPGEF11 RHO guany... 0
Si017325m.g 1 593607
598308
4.7 1 f 1 PF03478 AT2G26160.1 F-box family protein with a domain of unknown func... 0
Si020020m.g 1 595313
596499
1.2 1 r 1 PF03478 AT5G60060.1 Protein of unknown function (DUF295) ... 0
Si018002m.g 1 608529
614657
6.1 6 f 2 PF04367 AT2G20120.1 COV1 Protein of unknown function (DUF502) LOC_Os02g... 0
Si018089m.g 1 615741
616872
1.1 2 r 1 PF03330,PF01357 AT1G20190.1 ATEXP11,ATEXPA11,ATHEXP ALPHA 1.14,EXP11,EX... 0
Si018084m.g 1 620929
622047
1.1 2 r 1 PF03330,PF01357 AT1G20190.1 ATEXP11,ATEXPA11,ATHEXP ALPHA 1.14,EXP11,EX... 0
Si017105m.g 1 625478
628388
2.9 5 f 1 PF00400 PTHR19918 KOG0305 K03363 AT4G33270.1 CDC20.1 Transducin family pro... 0.36 0.45
Si018142m.g 1 634306
635476
1.2 1 r 1 PF03330,PF01357 AT1G20190.1 ATEXP11,ATEXPA11,ATHEXP ALPHA 1.14,EXP11,EX... 0
Si017897m.g 1 636241
641241
5 5 r 2 PF00717,PF10502 PTHR12383 KOG0171 3.4.21.89 K03100 AT3G24590.1 PLSP1 plasti... 0.69 0.74
Si016570m.g 1 641577
648235
6.7 11 r 1 PF01171 PTHR11807 AT3G24560.2 RSY3 Adenine nucleotide alpha hydrolases-l... 0.57 0.55
Si017048m.g 1 676263
679614
3.4 6 f 1 PF00023,PF00004 PTHR18958 AT3G24530.1 AAA-type ATPase family protein / ... 0.82 0.82
Si016698m.g 1 681050
684097
3 1 r 1 PF01535 PTHR10483 AT3G16010.1 Pentatricopeptide repeat (PPR-like) super... 1 0.97
Si018264m.g 1 684363
687558
3.2 4 f 1 PF06220 KOG3454 K11095 AT4G03120.1 C2H2 and C2HC zinc fingers superfamil... 0.97 0.97
Si018043m.g 1 687951
690486
2.5 4 r 2 PF00697 PTHR22854 KOG4202 5.3.1.24 K01817 AT1G07780.1 PAI1,TRP6 phosphoribo... 0.95 0.87
Si018225m.g 1 697642
700476
2.8 4 r 2 PF02453 PTHR10994 KOG1792 AT4G11220.1 BTI2,RTNLB2 VIRB2-interacting prote... 0.67 0.71
Si019455m.g 1 704830
705471
0.6 0 r 1 PF03168 AT2G46150.1 Late embryogenesis abundant (LEA) hydroxyproline-r... 0

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!