• Anonymous
  • Login

Search:  Display ?

Assembly/Version:  Chr:  Start:  End: Display:

PtGDB v.2 Loci/Annotations  ?

No filters | 40668 records Download .csv Atom Feed Subscribe
 Pages:
# / Page:

Page:

Showing: 1 - 100 out of 40668 records
 Search: Select column, enter value, click "Go".
Find: ?

 Filters: Select a filter, click "Go". Filters & Search are additive ("AND")
Annotation Project: ?
[view project information page]
yrGATE Status: ?
Coverage Score: ?
Integrity Score: ?
Link to this page
Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
(click to view)
Annotate it!
POPTR_0001s00200 1 12632
13612
1 3 f 1 PF04832 PTHR11220 AT3G10130.1 SOUL heme-binding family protein... 0.9 0.72
POPTR_0001s00210 1 19769
22804
3 1 f 1 PF01603 PTHR10257 AT3G09880.1 ATB' BETA Protein phosphatase 2A regulator... 0.67 0.87
POPTR_0001s00220 1 74076
75893
1.8 2 f 1 PF02365 AT1G12260.1 ANAC007,EMB2749,NAC007,VND4 NAC 007... 0
POPTR_0001s00230 1 80191
81289
1.1 1 r 1 AT1G12250.2 Pentapeptide repeat-containing protein... 0
POPTR_0001s00240 1 105028
107984
3 6 f 1 PF04690 AT2G45190.1 AFO,FIL,YAB1 Plant-specific transcription factor YA... 0.93 0.98
POPTR_0001s00250 1 112882
116932
4.1 8 r 1 PF07732,PF00394,PF07731 PTHR11709 KOG1263 AT4G12420.1 SKU5 Cupredoxin sup... 0.51 0.39
POPTR_0001s00260 1 127945
132456
4.5 12 r 1 PF00923 PTHR10683 KOG2772 2.2.1.2 K00616 AT1G12230.1 Aldolase superfamily ... 1 0.96
POPTR_0001s00270 1 137068
139439
2.4 11 r 1 PF02358 PTHR10788 AT4G12430.1 Haloacid dehalogenase-like hydrolase (HAD... 0
POPTR_0001s00280 1 140803
141195
0.4 0 r 1 ID=PAC:18235388;Name=POPTR_0001s00280.1;pacid=18235388;longest=1;Parent=POP... 0
POPTR_0001s00285 1 154170
155938
1.8 1 f 1 ID=PAC:18236308;Name=POPTR_0001s00285.1;pacid=18236308;longest=1;Parent=POP... 0.8 0.29
POPTR_0001s00290 1 163852
164909
1.1 1 r 1 AT4G22600.1 ... 0
POPTR_0001s00300 1 168044
169534
1.5 1 f 1 PF03016 PTHR11062 KOG1021 AT4G22580.1 Exostosin family protein... 0.85 0.31
POPTR_0001s00310 1 169629
176347
6.7 7 r 1 PF08545,PF08541 2.3.1.180 K00648 AT1G62640.2 KAS III 3-ketoacyl-acyl carr... 0
POPTR_0001s00320 1 188802
192173
3.4 6 r 1 PTHR23023 KOG1399 1.14.13.8 K00485 AT1G62620.1 Flavin-binding monooxygenas... 0.16 0.1
POPTR_0001s00330 1 195455
199610
4.2 6 r 1 PTHR23023 KOG1399 AT1G63370.1 Flavin-binding monooxygenase family protei... 0.86 0.71
POPTR_0001s00340 1 218114
221413
3.3 3 f 1 AT1G62530.2 Plant protein of unknown function (DUF863)... 0.59 0.63
POPTR_0001s00350 1 226515
228528
2 2 f 1 PF10533,PF03106 AT2G30590.1 WRKY21 WRKY DNA-binding protein 21... 0
POPTR_0001s00360 1 249047
255958
6.9 5 f 2 PF00156 PTHR10210 KOG1712 2.4.2.7 K00759 AT4G22570.1 APT3 adenine phosphori... 0.96 0.98
POPTR_0001s00370 1 257049
257492
0.4 1 r 1 AT5G28950.1 ... 0
POPTR_0001s00380 1 258983
259816
0.8 0 r 1 AT4G22560.1 ... 0
POPTR_0001s00390 1 295055
303570
8.5 11 f 5 PF00169,PF01237 PTHR10972 KOG1737 AT4G22540.1 ORP2A OSBP(oxysterol bindin... 0
POPTR_0001s00400 1 306524
307215
0.7 0 r 1 PF00234 AT1G12100.1 Bifunctional inhibitor/lipid-transfer protein/seed... 0
POPTR_0001s00410 1 310712
311538
0.8 0 f 1 PF00234 AT4G12520.1 Bifunctional inhibitor/lipid-transfer protein/seed... 0.95 0.96
POPTR_0001s00415 1 321508
322242
0.7 2 r 1 AT4G12550.1 AIR1 Auxin-Induced in Root cultures 1... 0
POPTR_0001s00420 1 324956
326077
1.1 1 r 1 PF00234 PTHR23201 AT3G22142.1 Bifunctional inhibitor/lipid-transfer pro... 0
POPTR_0001s00430 1 329115
332861
3.7 4 r 1 AT5G47570.1 ... 0.88 0.64
POPTR_0001s00440 1 335766
338057
2.3 2 r 2 PF00056,PF02866 PTHR11540 KOG1495 1.1.1.27 K00016 AT4G17260.1 Lactate/mala... 0.99 0.96
POPTR_0001s00450 1 348772
350656
1.9 2 f 1 AT4G16510.1 YbaK/aminoacyl-tRNA synthetase-associated domain... 0
POPTR_0001s00460 1 356131
357584
1.5 3 r 1 ID=PAC:18235816;Name=POPTR_0001s00460.1;pacid=18235816;longest=1;Parent=POP... 0
POPTR_0001s00470 1 360387
363428
3 5 r 2 PF02991 PTHR10969 KOG1654 AT4G16520.1 ATG8F Ubiquitin-like superfamily pr... 0.66 0.77
POPTR_0001s00480 1 386257
388590
2.3 0 f 1 PF03514 AT4G00150.1 ATHAM3,HAM3 GRAS family transcription factor... 0
POPTR_0001s00490 1 396645
397932
1.3 2 r 1 ID=PAC:18237327;Name=POPTR_0001s00490.1;pacid=18237327;longest=1;Parent=POP... 0
POPTR_0001s00500 1 399094
399544
0.5 0 f 1 AT2G35736.1 ... 1 0.63
POPTR_0001s00510 1 401200
402125
0.9 1 r 1 AT5G47580.1 ... 0
POPTR_0001s00520 1 404022
406422
2.4 0 r 1 AT5G47580.1 ... 0
POPTR_0001s00530 1 412920
415720
2.8 2 f 1 PTHR22093 AT4G16530.1 Family of unknown function (DUF577)... 0
POPTR_0001s00540 1 422692
423102
0.4 0 f 1 AT4G19980.1 ... 0
POPTR_0001s00550 1 424340
437635
13.3 9 r 1 PF00628,PF00385,PF00176,PF00271,PF06465 PTHR10799 KOG0383 AT5G44800.1 CHR... 0
POPTR_0001s00560 1 444781
452995
8.2 8 f 1 PF00564,PF07714,PF00069 PTHR23257 KOG0192 AT1G79570.1 Protein kinase sup... 0.23 0.54
POPTR_0001s00570 1 457046
464651
7.6 19 f 1 PF00009,PF03144,PF03764,PF00679 PTHR23115 KOG0465 3.6.5.3 K02355 AT1G45332.... 0.5 0.45
POPTR_0001s00580 1 471744
477819
6.1 8 r 1 PF02705 AT2G35060.1 KUP11 K+ uptake permease 11... 0
POPTR_0001s00590 1 484931
491430
6.5 7 r 1 PF02705 AT2G35060.1 KUP11 K+ uptake permease 11... 0
POPTR_0001s00600 1 512629
514441
1.8 3 r 1 ID=PAC:18238020;Name=POPTR_0001s00600.1;pacid=18238020;longest=1;Parent=POP... 0
POPTR_0001s00610 1 517061
524834
7.8 12 r 1 PF00628,PF00097,PF02845 PTHR12477 KOG0802 AT4G25230.2 RIN2 RPM1 interacti... 0.25 0.23
POPTR_0001s00620 1 535419
536328
0.9 1 f 2 AT4G25225.1 ... 0.56 0.26
POPTR_0001s00630 1 540839
544291
3.5 3 r 1 PF07690 PTHR11662 KOG2533 K13783 AT3G47420.1 ATPS3,PS3 phosphate starvatio... 0
POPTR_0001s00640 1 554391
557381
3 6 f 1 PF03194 PTHR12375 KOG0796 AT5G51410.3 LUC7 N_terminus domain-containing ... 0.67 0.79
POPTR_0001s00650 1 559198
560349
1.2 0 f 1 PF05648 PTHR12652 KOG4186 AT3G47430.1 PEX11B peroxin 11B... 0
POPTR_0001s00660 1 561150
565161
4 3 f 1 PF04749 AT2G45010.1 PLAC8 family protein... 0.9 0.94
POPTR_0001s00670 1 567573
567812
0.2 0 r 1 AT2G04865.1 Aminotransferase-like, plant mobile domain family protein... 0
POPTR_0001s00680 1 568302
569613
1.3 1 f 1 PF01221 PTHR11886 KOG3430 AT5G20110.1 Dynein light chain type 1 family p... 0
POPTR_0001s00690 1 571477
572852
1.4 2 f 1 PF00230 PTHR19139 KOG0223 K09873 AT3G47440.1 TIP5;1 tonoplast intrinsic pr... 0
POPTR_0001s00700 1 575690
581087
5.4 12 f 1 PTHR11089 KOG1249 1.14.13.39 K13427 AT3G47450.2 ATNOA1,ATNOS1,NOA1,NOS1,RIF... 0.37 0.32
POPTR_0001s00710 1 581650
590319
8.7 20 f 1 PF02463,PF07197,PF04508,PF06470 PTHR18937 KOG0933 K06674 AT5G62410.1 ATCAP... 0
POPTR_0001s00720 1 597854
600247
2.4 0 r 1 PF05178 PTHR14490 KOG2409 AT3G24080.1 KRR1 family protein... 0.23 0.77
POPTR_0001s00730 1 604400
604664
0.3 1 f 1 PTHR13162 AT1G02080.1 transcription regulators... 0
POPTR_0001s00750 1 617060
619829
2.8 4 f 1 PF00248 PTHR11732 KOG1577 AT5G62420.1 NAD(P)-linked oxidoreductase super... 0
POPTR_0001s00760 1 620492
623539
3 6 r 1 PF03547 KOG2722 AT1G76530.1 Auxin efflux carrier family protein... 0
POPTR_0001s00770 1 629789
630502
0.7 0 f 1 PF00244 PTHR18860 KOG0841 AT2G42590.3 GF14 MU,GRF9 general regulatory fac... 0
POPTR_0001s00780 1 631345
638854
7.5 15 r 1 AT5G61450.1 P-loop containing nucleoside triphosphate hydrolases superfami... 0
POPTR_0001s00790 1 641830
644368
2.5 1 r 1 PTHR23125 AT5G07670.1 RNI-like superfamily protein... 0.36 0.21
POPTR_0001s00800 1 656854
657948
1.1 3 f 1 PF12171,PF00096 PTHR11389 AT3G60580.1 C2H2-like zinc finger protein... 0
POPTR_0001s00810 1 661474
663486
2 4 f 1 PF04484 AT4G25190.1 Family of unknown function (DUF566) ... 0
POPTR_0001s00820 1 664403
668822
4.4 1 r 1 PF08263,PF00560,PF07714,PF00069 PTHR23258 KOG1187 AT5G61480.1 PXY Leucine... 0.19 0.72
POPTR_0001s00830 1 682423
690391
8 14 r 1 PF04506 PTHR13117 KOG2864 K06316 AT5G07630.1 lipid transporters... 0.7 0.61
POPTR_0001s00840 1 695102
698855
3.8 3 f 1 AT4G25170.1 Uncharacterised conserved protein (UCP012943)... 0
POPTR_0001s00850 1 706402
710436
4 1 r 1 PF00013,PF00098,PF00076 PTHR11208 KOG0119 AT5G51300.3 splicing factor-re... 0.44 0.81
POPTR_0001s00860 1 712653
717556
4.9 9 r 1 PF03986,PF03987,PF10381 PTHR12866 KOG2981 K08343 AT5G61500.1 ATATG3,ATG3 a... 0
POPTR_0001s00870 1 720174
720828
0.7 1 r 1 PTHR10209 AT5G51310.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygena... 0
POPTR_0001s00880 1 726374
731199
4.8 10 f 1 PF00155 PTHR13693 KOG1359 2.3.1.47 K00652 AT5G04620.2 ATBIOF,BIOF biotin F... 0
POPTR_0001s00890 1 734944
737341
2.4 5 r 1 AT5G51330.1 DYAD,SWI1 SWITCH1... 0
POPTR_0001s00900 1 740369
740656
0.3 0 r 1 ID=PAC:18235521;Name=POPTR_0001s00900.1;pacid=18235521;longest=1;Parent=POP... 0
POPTR_0001s00910 1 746892
747231
0.3 0 f 1 ID=PAC:18235801;Name=POPTR_0001s00910.1;pacid=18235801;longest=1;Parent=POP... 1 0.66
POPTR_0001s00920 1 747484
752926
5.4 5 f 1 PF00097 PTHR22765 KOG1493 AT5G45290.1 RING/U-box superfamily protein... 0.07 0.07
POPTR_0001s00930 1 753734
754015
0.3 0 f 1 AT2G45220.1 Plant invertase/pectin methylesterase inhibitor superfamily... 0
POPTR_0001s00940 1 762215
768161
5.9 6 f 1 PF03759 AT1G31650.1 ATROPGEF14,ROPGEF14 RHO guanyl-nucleotide exchange ... 0.23 0.12
POPTR_0001s00950 1 769080
771231
2.2 2 r 1 PF02458 AT5G17540.1 HXXXD-type acyl-transferase family protein... 0
POPTR_0001s00960 1 777778
778317
0.5 0 r 1 PF04043 AT4G02250.1 Plant invertase/pectin methylesterase inhibitor su... 0
POPTR_0001s00970 1 778629
782323
3.7 1 r 1 PF02458 AT5G17540.1 HXXXD-type acyl-transferase family protein... 0.3 0.09
POPTR_0001s00990 1 786843
791117
4.3 8 r 1 PF00293 PTHR13994 KOG0648 AT5G47650.1 ATNUDT2,ATNUDX2,NUDT2 nudix hydrola... 0.03 0.05
POPTR_0001s01000 1 796484
797314
0.8 2 f 1 ID=PAC:18234224;Name=POPTR_0001s01000.1;pacid=18234224;longest=1;Parent=POP... 0
POPTR_0001s01010 1 799368
802449
3.1 5 f 1 PF01988 AT4G27870.1 Vacuolar iron transporter (VIT) family protein... 0
POPTR_0001s01020 1 807081
808824
1.7 0 f 1 PF02458 AT1G31490.1 HXXXD-type acyl-transferase family protein... 0
POPTR_0001s01040 1 827080
832694
5.6 3 f 1 PF06813 PTHR21576 AT5G45275.1 Major facilitator superfamily protein... 0
POPTR_0001s01050 1 833060
834526
1.5 0 r 1 PF00534 PTHR12526 AT4G19460.1 UDP-Glycosyltransferase superfamily prote... 0
POPTR_0001s01060 1 835784
839029
3.2 1 r 1 PF08263,PF00560 PTHR23258 KOG0472 AT1G45616.1 AtRLP6,RLP6 receptor like p... 0
POPTR_0001s01070 1 845404
847713
2.3 4 r 1 PF00069,PF07714 PTHR23258 KOG1187 AT1G61590.1 Protein kinase superfamily... 0
POPTR_0001s01080 1 854597
855844
1.2 0 f 1 AT1G31460.1 ... 0.89 0.92
POPTR_0001s01090 1 855898
860127
4.2 12 r 1 PF07728,PF00004 PTHR23077 KOG0730 AT2G03670.1 CDC48B cell division cycle ... 0
POPTR_0001s01100 1 863467
868848
5.4 9 f 1 PF07653,PF00018 PTHR10661 KOG1118 AT4G34660.1 SH3 domain-containing prot... 0.68 0.77
POPTR_0001s01110 1 869884
870478
0.6 1 f 1 AT1G31410.1 putrescine-binding periplasmic protein-related... 0
POPTR_0001s01120 1 870642
878986
8.3 14 r 7 PF08263,PF00560,PF00069,PF07714 PTHR23258 KOG1187 AT1G31420.2 FEI1 Leucin... 0.1 0.13
POPTR_0001s01130 1 882988
887473
4.5 8 r 1 PF00009,PF03144,PF09173 PTHR23115 KOG0466 K03242 AT1G04170.1 EIF2 GAMMA eu... 0
POPTR_0001s01140 1 892738
894372
1.6 1 r 1 PF00646 AT3G07870.1 F-box and associated interaction domains-containin... 0
POPTR_0001s01150 1 895641
896577
0.9 1 f 1 PF00335 AT4G28050.1 TET7 tetraspanin7... 0
POPTR_0001s01160 1 897059
899997
2.9 3 r 1 PF00646 PTHR19383 AT5G61320.1 CYP89A3 cytochrome P450, family 89, subfam... 0
POPTR_0001s01165 1 908441
912613
4.2 1 f 1 PF04419 PTHR21213 KOG4118 ... 0.34 0.77
POPTR_0001s01170 1 914928
925526
10.6 22 r 1 PF01055 PTHR22762 KOG1065 AT3G23640.2 HGL1 heteroglycan glucosidase 1... 0.17 0.16
POPTR_0001s01180 1 925976
929977
4 1 r 1 PF01585 PTHR15818 KOG4315 K13101 AT1G33520.1 MOS2 D111/G-patch domain-cont... 0.28 0.77
POPTR_0001s01190 1 933925
936300
2.4 2 r 1 PF00023 PTHR18958 AT5G61230.1 Ankyrin repeat family protein... 0.82 0.95

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!