OsGDB v.4 Loci/Annotations
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| Locus ID |
Gen ome |
Chr | From/To | Len (kb) |
Intron Count |
Str | # Tran |
Locus Description (hover for complete description) |
Gene | Gene Structure Annotation Project | Cov er age  |
Inte grity |
yrGATE Anno Count |
yrGATE Anno Class |
yrGATE Gene Product | Anno Status (click to view) |
Annotate it! |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ChrSy.fgenesh.gene.1 | 0 | 785 109950 |
109.2 | 3 | r | 11 | PF05754 ... | 0 | |||||||||
| ChrUn.fgenesh.gene.1 | 0 | 1193 112234 |
111 | 11 | r | 11 | ID=PAC:21882546;Name=ChrUn.fgenesh.mRNA.1;pacid=21882546;longest=1;Parent=C... | 0 | |||||||||
| ChrUn.fgenesh.gene.2 | 0 | 2314 178994 |
176.7 | 15 | r | 11 | ID=PAC:21882538;Name=ChrUn.fgenesh.mRNA.2;pacid=21882538;longest=1;Parent=C... | 0 | |||||||||
| ChrSy.fgenesh.gene.2 | 0 | 3820 209222 |
205.4 | 12 | f | 11 | PF10536,PF07197 PTHR10178 ... | 0 | |||||||||
| ChrUn.fgenesh.gene.3 | 0 | 7904 234374 |
226.5 | 6 | f | 11 | PTHR10178:SF17 ... | 0 | |||||||||
| ChrSy.fgenesh.gene.3 | 0 | 9775 284947 |
275.2 | 8 | f | 11 | ID=PAC:21933999;Name=ChrSy.fgenesh.mRNA.3;pacid=21933999;longest=1;Parent=C... | 0 | |||||||||
| ChrUn.fgenesh.gene.4 | 0 | 9952 294178 |
284.2 | 3 | f | 11 | PTHR10178:SF20 ... | 0 | |||||||||
| ChrSy.fgenesh.gene.4 | 0 | 12503 350483 |
338 | 23 | r | 11 | PF03732 ... | 0 | |||||||||
| ChrUn.fgenesh.gene.5 | 0 | 14067 375478 |
361.4 | 7 | f | 11 | PF00078 PTHR10178 ... | 0 | |||||||||
| ChrUn.fgenesh.gene.6 | 0 | 17558 455909 |
438.4 | 8 | f | 11 | PTHR10178:SF1 ... | 0 | |||||||||
| ChrSy.fgenesh.gene.5 | 0 | 21036 399451 |
378.4 | 11 | f | 11 | ID=PAC:21934037;Name=ChrSy.fgenesh.mRNA.5;pacid=21934037;longest=1;Parent=C... | 0 | |||||||||
| ChrUn.fgenesh.gene.7 | 0 | 26553 507659 |
481.1 | 10 | f | 11 | PF03732,PF08284,PF09668,PF00078 PTHR10178 ATMG00860.1 DNA/RNA polymeras... | 0 | |||||||||
| ChrSy.fgenesh.gene.6 | 0 | 30178 462962 |
432.8 | 13 | r | 11 | ID=PAC:21934044;Name=ChrSy.fgenesh.mRNA.6;pacid=21934044;longest=1;Parent=C... | 0 | |||||||||
| ChrUn.fgenesh.gene.8 | 0 | 32572 585150 |
552.6 | 24 | r | 11 | PF03732 PTHR11439 AT5G48050.1 ... | 0 | |||||||||
| ChrSy.fgenesh.gene.7 | 0 | 40271 541130 |
500.9 | 7 | f | 11 | PF00665,PF07727 PTHR11439 AT4G23160.1 CRK8 cysteine-rich RLK (RECEPTOR-l... | 0 | |||||||||
| ChrUn.fgenesh.gene.9 | 0 | 41615 626397 |
584.8 | 5 | r | 8 | ID=PAC:21882513;Name=ChrUn.fgenesh.mRNA.9;pacid=21882513;longest=1;Parent=C... | 0 | |||||||||
| ChrSy.fgenesh.gene.8 | 0 | 44530 589999 |
545.5 | 8 | f | 11 | ID=PAC:21934017;Name=ChrSy.fgenesh.mRNA.8;pacid=21934017;longest=1;Parent=C... | 0 | |||||||||
| ChrSy.fgenesh.gene.9 | 0 | 46518 47000 |
0.5 | 0 | f | 1 | ID=PAC:21934012;Name=ChrSy.fgenesh.mRNA.9;pacid=21934012;longest=1;Parent=C... | 0 | |||||||||
| LOC_Os01g01010 | 1 | 2903 10817 |
7.9 | 11 | f | 2 | PF00566 PTHR22957 AT2G43490.6 Ypt/Rab-GAP domain of gyp1p superfamily p... | 1 | 0.89 | ||||||||
| LOC_Os01g01019 | 1 | 11218 12435 |
1.2 | 1 | f | 1 | ID=PAC:21907068;Name=LOC_Os01g01019.1;pacid=21907068;longest=1;Parent=LOC_O... | 1.15 | 1.05 | ||||||||
| LOC_Os01g01030 | 1 | 12648 15915 |
3.3 | 4 | f | 1 | PF07732,PF00394,PF07731 PTHR11709 KOG1263 AT5G48450.1 sks3 SKU5 similar ... | 1 | 0.98 | ||||||||
| LOC_Os01g01040 | 1 | 16292 20323 |
4 | 7 | f | 4 | AT5G16520.1 ... | 0.99 | 0.99 | ||||||||
| LOC_Os01g01050 | 1 | 22841 26971 |
4.1 | 5 | f | 2 | PF01424 ... | 0.96 | 0.99 | ||||||||
| LOC_Os01g01060 | 1 | 27136 28651 |
1.5 | 3 | f | 1 | PF00177 PTHR11205 KOG3291 K02989 AT2G37270.1 ATRPS5B,RPS5B ribosomal prote... | 1 | 0.97 | ||||||||
| LOC_Os01g01070 | 1 | 29818 34493 |
4.7 | 13 | f | 3 | PF07889 AT1G24265.1 Protein of unknown function (DUF1664)... | 0.91 | 0.95 | ||||||||
| LOC_Os01g01080 | 1 | 35581 41180 |
5.6 | 14 | f | 3 | PF00282,PF00266 PTHR11999 KOG1383 4.1.2.27 K01634 AT1G27980.1 ATDPL1,DPL1 d... | 1 | 1 | ||||||||
| LOC_Os01g01090 | 1 | 44595 47526 |
2.9 | 7 | f | 1 | PF04195 ... | 0 | |||||||||
| LOC_Os01g01100 | 1 | 47856 53412 |
5.6 | 4 | r | 1 | PF00078,PF00665 PTHR10178 ATMG00860.1 DNA/RNA polymerases superfamily p... | 0 | |||||||||
| LOC_Os01g01110 | 1 | 57082 57972 |
0.9 | 0 | f | 1 | PF07714,PF00069 PTHR23258 AT1G23540.1 AtPERK12,IGI1 Protein kinase super... | 0 | |||||||||
| LOC_Os01g01115 | 1 | 58658 61090 |
2.4 | 0 | f | 1 | PF01535 PTHR10483 AT3G02010.1 Pentatricopeptide repeat (PPR) superfamil... | 0.02 | 0.61 | ||||||||
| LOC_Os01g01120 | 1 | 62059 63576 |
1.5 | 3 | f | 1 | PTHR20371 KOG2630 AT5G53850.2 haloacid dehalogenase-like hydrolase famil... | 1 | 0.96 | ||||||||
| LOC_Os01g01130 | 1 | 63244 66302 |
3.1 | 6 | r | 1 | PTHR13403 KOG3132 K13151 AT4G24880.1 ... | 1 | 1 | ||||||||
| LOC_Os01g01140 | 1 | 69675 70131 |
0.5 | 1 | f | 1 | ID=PAC:21903244;Name=LOC_Os01g01140.1;pacid=21903244;longest=1;Parent=LOC_O... | 0 | |||||||||
| LOC_Os01g01150 | 1 | 72775 79938 |
7.2 | 4 | f | 3 | PF00630,PF00076 PTHR10432 KOG4676 AT3G23900.1 RNA recognition motif (RRM... | 1 | 0.98 | ||||||||
| LOC_Os01g01160 | 1 | 82428 84302 |
1.9 | 1 | f | 1 | PF00226 PTHR11821 AT4G13830.2 J20 DNAJ-like 20... | 0.68 | 0.27 | ||||||||
| LOC_Os01g01170 | 1 | 85337 88844 |
3.5 | 6 | f | 1 | AT3G23740.1 ... | 1 | 0.96 | ||||||||
| LOC_Os01g01180 | 1 | 88986 89204 |
0.2 | 0 | r | 1 | PF11820 AT5G63500.1 Protein of unknown function (DUF 3339)... | 0 | |||||||||
| LOC_Os01g01190 | 1 | 89653 91521 |
1.9 | 0 | r | 1 | PF04185 AT3G48610.1 NPC6 non-specific phospholipase C6... | 1 | 0.96 | ||||||||
| LOC_Os01g01200 | 1 | 95499 98558 |
3.1 | 6 | f | 1 | PF04195 ... | 0 | |||||||||
| LOC_Os01g01210 | 1 | 99171 100681 |
1.5 | 1 | r | 1 | PTHR10178 ... | 0 | |||||||||
| LOC_Os01g01230 | 1 | 105872 106534 |
0.7 | 0 | f | 1 | PF04195 ... | 0 | |||||||||
| LOC_Os01g01240 | 1 | 108618 114983 |
6.4 | 2 | f | 1 | PF03732,PF08284,PF09668,PF00078,PF00665,PF00385 PTHR10178 ATMG00860.1 D... | 0 | |||||||||
| LOC_Os01g01250 | 1 | 118081 120671 |
2.6 | 1 | f | 1 | PF04094 ... | 0 | |||||||||
| LOC_Os01g01260 | 1 | 121302 127457 |
6.2 | 1 | r | 1 | PF03732,PF00078,PF00075,PF00665 PTHR10178 AT3G01410.1 Polynucleotidyl t... | 0 | |||||||||
| LOC_Os01g01270 | 1 | 128897 133559 |
4.7 | 5 | r | 1 | PF03732 PTHR10178 ... | 0 | |||||||||
| LOC_Os01g01280 | 1 | 134291 135685 |
1.4 | 2 | f | 1 | AT4G24930.1 thylakoid lumenal 17.9 kDa protein, chloroplast... | 1 | 0.96 | ||||||||
| LOC_Os01g01290 | 1 | 139820 141588 |
1.8 | 1 | f | 1 | PF00808 PTHR10252 AT5G63470.1 NF-YC4 nuclear factor Y, subunit C4... | 0.98 | 0.97 | ||||||||
| LOC_Os01g01295 | 1 | 141936 144554 |
2.6 | 3 | f | 1 | AT5G13100.1 ... | 1 | 0.99 | ||||||||
| LOC_Os01g01302 | 1 | 145577 147852 |
2.3 | 8 | f | 1 | PF01202 PTHR21087 AT3G26900.1 ATSKL1,SKL1 shikimate kinase like 1... | 1 | 0.97 | ||||||||
| LOC_Os01g01307 | 1 | 148045 150577 |
2.5 | 4 | f | 2 | PF05753 PTHR12861 KOG3317 AT5G14030.1 translocon-associated protein beta... | 0.99 | 0.75 | ||||||||
| LOC_Os01g01312 | 1 | 151409 156500 |
5.1 | 6 | f | 1 | PF00176,PF00271 PTHR10799 KOG0387 K10841 AT2G18760.1 CHR8 chromatin remode... | 0.97 | 0.89 | ||||||||
| LOC_Os01g01320 | 1 | 157728 160941 |
3.2 | 3 | r | 1 | PF00665,PF07727 PTHR11439 AT4G23160.1 CRK8 cysteine-rich RLK (RECEPTOR-l... | 0 | |||||||||
| LOC_Os01g01330 | 1 | 161365 164107 |
2.7 | 1 | r | 1 | ID=PAC:21908727;Name=LOC_Os01g01330.1;pacid=21908727;longest=1;Parent=LOC_O... | 0 | |||||||||
| LOC_Os01g01340 | 1 | 168470 170389 |
1.9 | 2 | r | 2 | PF07207 AT3G26740.1 CCL CCR-like... | 0.78 | 0.92 | ||||||||
| LOC_Os01g01350 | 1 | 170712 173434 |
2.7 | 6 | r | 2 | PF03357 PTHR22761 KOG1655 K12198 AT3G10640.1 VPS60.1 SNF7 family protein... | 1 | 0.99 | ||||||||
| LOC_Os01g01360 | 1 | 178310 180812 |
2.5 | 0 | f | 1 | PF07690,PF00854 PTHR11654 KOG1237 AT5G13400.1 Major facilitator superfam... | 0.88 | 0.96 | ||||||||
| LOC_Os01g01369 | 1 | 186246 190846 |
4.6 | 3 | r | 1 | PF05241 PTHR14207 KOG4826 5.3.3.5 K01824 AT1G20050.1 HYD1 C-8,7 sterol isom... | 0.93 | 0.98 | ||||||||
| LOC_Os01g01380 | 1 | 191036 196287 |
5.3 | 5 | f | 1 | PTHR13322:SF2 AT4G20060.1 EMB1895 ARM repeat superfamily protein... | 1 | 1 | ||||||||
| LOC_Os01g01390 | 1 | 197647 200803 |
3.2 | 4 | f | 5 | AT1G76660.1 ... | 1 | 1 | ||||||||
| LOC_Os01g01400 | 1 | 201944 206743 |
4.8 | 11 | f | 1 | AT5G07380.1 ... | 1 | 0.97 | ||||||||
| LOC_Os01g01410 | 1 | 205710 209606 |
3.9 | 3 | r | 2 | PF00059,PF00069,PF07714 PTHR23258 KOG1187 AT1G52310.1 protein kinase fam... | 1 | 0.97 | ||||||||
| LOC_Os01g01420 | 1 | 209771 214229 |
4.5 | 7 | f | 3 | PTHR15315 AT3G54360.1 zinc ion binding... | 0.92 | 0.97 | ||||||||
| LOC_Os01g01430 | 1 | 216126 217664 |
1.5 | 1 | f | 1 | PF02365 AT3G04070.1 anac047,NAC047 NAC domain containing protein 47... | 0.87 | 0.33 | ||||||||
| LOC_Os01g01440 | 1 | 219011 220776 |
1.8 | 1 | r | 1 | ID=PAC:21910831;Name=LOC_Os01g01440.1;pacid=21910831;longest=1;Parent=LOC_O... | 0 | |||||||||
| LOC_Os01g01450 | 1 | 226897 229331 |
2.4 | 3 | f | 2 | AT2G39050.1 hydroxyproline-rich glycoprotein family protein... | 0.96 | 0.99 | ||||||||
| LOC_Os01g01460 | 1 | 232377 232688 |
0.3 | 0 | r | 1 | PTHR10178:SF7 ... | 0 | |||||||||
| LOC_Os01g01470 | 1 | 241641 243468 |
1.8 | 2 | f | 1 | PF02365 AT5G18270.2 ANAC087 Arabidopsis NAC domain containing protein 8... | 1 | 0.98 | ||||||||
| LOC_Os01g01484 | 1 | 248706 256878 |
8.2 | 10 | r | 4 | PF09737 PTHR13374 KOG2558 K10571 AT4G10180.1 ATDET1,DET1,FUS2 light-mediat... | 0.99 | 1 | ||||||||
| LOC_Os01g01500 | 1 | 259607 259909 |
0.3 | 0 | f | 1 | PF04788 AT3G19540.1 Protein of unknown function (DUF620)... | 0 | |||||||||
| LOC_Os01g01510 | 1 | 261504 268471 |
7 | 15 | f | 2 | PF04000,PF09368 PTHR13237 AT2G43650.1 EMB2777 Sas10/U3 ribonucleoprotein... | 0.99 | 0.96 | ||||||||
| LOC_Os01g01520 | 1 | 270145 275084 |
4.9 | 1 | r | 1 | PF02458 AT1G27620.1 HXXXD-type acyl-transferase family protein... | 0.98 | 0.98 | ||||||||
| LOC_Os01g01530 | 1 | 276285 277881 |
1.6 | 3 | r | 1 | ID=PAC:21907575;Name=LOC_Os01g01530.1;pacid=21907575;longest=1;Parent=LOC_O... | 0 | |||||||||
| LOC_Os01g01540 | 1 | 279982 280494 |
0.5 | 0 | f | 1 | ID=PAC:21904712;Name=LOC_Os01g01540.1;pacid=21904712;longest=1;Parent=LOC_O... | 0 | |||||||||
| LOC_Os01g01550 | 1 | 280846 283924 |
3.1 | 4 | r | 1 | PF02458 AT1G27620.1 HXXXD-type acyl-transferase family protein... | 0.2 | 0.06 | ||||||||
| LOC_Os01g01560 | 1 | 284911 292118 |
7.2 | 4 | r | 1 | PF02892,PF05699 PTHR23272 AT3G42170.1 BED zinc finger ;hAT family dimer... | 0.17 | 0.4 | ||||||||
| LOC_Os01g01570 | 1 | 288372 292296 |
3.9 | 8 | f | 1 | ID=PAC:21906566;Name=LOC_Os01g01570.1;pacid=21906566;longest=1;Parent=LOC_O... | 1 | 1 | ||||||||
| LOC_Os01g01580 | 1 | 292844 293535 |
0.7 | 0 | f | 1 | ID=PAC:21910502;Name=LOC_Os01g01580.1;pacid=21910502;longest=1;Parent=LOC_O... | 0.85 | 0.9 | ||||||||
| LOC_Os01g01590 | 1 | 293648 294536 |
0.9 | 1 | f | 1 | ID=PAC:21907119;Name=LOC_Os01g01590.1;pacid=21907119;longest=1;Parent=LOC_O... | 0 | |||||||||
| LOC_Os01g01600 | 1 | 303103 306800 |
3.7 | 6 | f | 1 | AT1G27660.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein... | 1 | 1 | ||||||||
| LOC_Os01g01610 | 1 | 306869 308842 |
2 | 3 | r | 1 | PF01521 PTHR10072 KOG1120 K13628 AT2G16710.1 Iron-sulphur cluster biosynt... | 0.97 | 0.98 | ||||||||
| LOC_Os01g01620 | 1 | 309459 313170 |
3.7 | 7 | r | 1 | PF00294 PTHR10584 KOG2854 AT1G19600.1 pfkB-like carbohydrate kinase fami... | 1 | 0.98 | ||||||||
| LOC_Os01g01640 | 1 | 319713 322248 |
2.5 | 2 | f | 1 | PF03248 PTHR10743 KOG1688 AT4G39220.1 ATRER1A Rer1 family protein... | 0.98 | 0.98 | ||||||||
| LOC_Os01g01650 | 1 | 322556 323948 |
1.4 | 1 | r | 1 | PF05368,PF01370,PF01073 PTHR10366 AT1G75290.1 NAD(P)-binding Rossmann-f... | 0.94 | 0.96 | ||||||||
| LOC_Os01g01660 | 1 | 327128 328451 |
1.3 | 1 | r | 1 | PF05368,PF01370,PF01073 PTHR10366 AT1G75280.1 NmrA-like negative transc... | 0.97 | 0.95 | ||||||||
| LOC_Os01g01670 | 1 | 330238 332345 |
2.1 | 1 | r | 2 | AT5G60030.1 ... | 1 | 0.97 | ||||||||
| LOC_Os01g01680 | 1 | 332667 333689 |
1 | 0 | r | 1 | AT2G46630.1 ... | 1 | 0.96 | ||||||||
| LOC_Os01g01689 | 1 | 335809 371191 |
35.4 | 77 | f | 2 | PF02259,PF00454,PF02260 PTHR11139 2.7.11.1 K04728 AT3G48190.1 ATATM,ATM at... | 0.05 | 0.05 | ||||||||
| LOC_Os01g01700 | 1 | 371831 374470 |
2.6 | 4 | f | 1 | PTHR11210 KOG2930 K03868 AT5G20570.1 ATRBX1,HRT1,RBX1,ROC1 RING-box 1... | 1 | 0.97 | ||||||||
| LOC_Os01g01710 | 1 | 374728 380716 |
6 | 11 | r | 2 | PF02670,PF08436 1.1.1.267 K00099 AT5G62790.1 DXR,PDE129 1-deoxy-D-xylulos... | 0.91 | 0.97 | ||||||||
| LOC_Os01g01720 | 1 | 383047 386701 |
3.7 | 9 | r | 2 | PF04695 PTHR23058:SF1 K13343 AT5G62810.1 ATPEX14,PED2,PEX14 peroxin 14... | 0.88 | 0.95 | ||||||||
| LOC_Os01g01730 | 1 | 390051 390623 |
0.6 | 0 | f | 1 | ID=PAC:21904418;Name=LOC_Os01g01730.1;pacid=21904418;longest=1;Parent=LOC_O... | 0 | |||||||||
| LOC_Os01g01740 | 1 | 392081 396651 |
4.6 | 2 | r | 1 | PF07714,PF00069 PTHR23257 KOG0192 AT1G62400.1 HT1 Protein kinase superfam... | 0.83 | 0.65 | ||||||||
| LOC_Os01g01760 | 1 | 403692 404402 |
0.7 | 0 | r | 1 | ID=PAC:21906962;Name=LOC_Os01g01760.1;pacid=21906962;longest=1;Parent=LOC_O... | 0 | |||||||||
| LOC_Os01g01770 | 1 | 409700 410818 |
1.1 | 1 | f | 1 | PF00929 PTHR12801 KOG2249 AT5G40310.1 Exonuclease family protein... | 0 | |||||||||
| LOC_Os01g01780 | 1 | 412579 415830 |
3.3 | 6 | f | 1 | PF03016 PTHR11062 KOG1021 AT4G16745.1 Exostosin family protein... | 1 | 0.97 | ||||||||
| LOC_Os01g01790 | 1 | 416241 420497 |
4.3 | 10 | r | 2 | PF12014 AT1G27510.1 Protein of unknown function (DUF3506)... | 0.96 | 0.96 | ||||||||
| LOC_Os01g01800 | 1 | 422462 431692 |
9.2 | 20 | f | 2 | AT5G08440.1 ... | 0.99 | 0.97 | ||||||||
| LOC_Os01g01810 | 1 | 432435 432752 |
0.3 | 0 | r | 1 | ID=PAC:21903621;Name=LOC_Os01g01810.1;pacid=21903621;longest=1;Parent=LOC_O... | 1 | 0.78 | ||||||||
| LOC_Os01g01830 | 1 | 437613 449137 |
11.5 | 16 | f | 1 | PF02897,PF00326 PTHR11757 KOG2237 3.4.21.26 K01322 AT1G76140.1 Prolyl olig... | 1 | 1 | ||||||||
| LOC_Os01g01840 | 1 | 455512 460716 |
5.2 | 4 | f | 1 | PF00010 AT1G10586.1 basic helix-loop-helix (bHLH) DNA-binding superfam... | 0.48 | 0.34 |