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OsGDB v.4 Loci/Annotations  ?

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Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
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Annotate it!
ChrSy.fgenesh.gene.1 0 785
109950
109.2 3 r 11 PF05754 ... 0
ChrUn.fgenesh.gene.1 0 1193
112234
111 11 r 11 ID=PAC:21882546;Name=ChrUn.fgenesh.mRNA.1;pacid=21882546;longest=1;Parent=C... 0
ChrUn.fgenesh.gene.2 0 2314
178994
176.7 15 r 11 ID=PAC:21882538;Name=ChrUn.fgenesh.mRNA.2;pacid=21882538;longest=1;Parent=C... 0
ChrSy.fgenesh.gene.2 0 3820
209222
205.4 12 f 11 PF10536,PF07197 PTHR10178 ... 0
ChrUn.fgenesh.gene.3 0 7904
234374
226.5 6 f 11 PTHR10178:SF17 ... 0
ChrSy.fgenesh.gene.3 0 9775
284947
275.2 8 f 11 ID=PAC:21933999;Name=ChrSy.fgenesh.mRNA.3;pacid=21933999;longest=1;Parent=C... 0
ChrUn.fgenesh.gene.4 0 9952
294178
284.2 3 f 11 PTHR10178:SF20 ... 0
ChrSy.fgenesh.gene.4 0 12503
350483
338 23 r 11 PF03732 ... 0
ChrUn.fgenesh.gene.5 0 14067
375478
361.4 7 f 11 PF00078 PTHR10178 ... 0
ChrUn.fgenesh.gene.6 0 17558
455909
438.4 8 f 11 PTHR10178:SF1 ... 0
ChrSy.fgenesh.gene.5 0 21036
399451
378.4 11 f 11 ID=PAC:21934037;Name=ChrSy.fgenesh.mRNA.5;pacid=21934037;longest=1;Parent=C... 0
ChrUn.fgenesh.gene.7 0 26553
507659
481.1 10 f 11 PF03732,PF08284,PF09668,PF00078 PTHR10178 ATMG00860.1 DNA/RNA polymeras... 0
ChrSy.fgenesh.gene.6 0 30178
462962
432.8 13 r 11 ID=PAC:21934044;Name=ChrSy.fgenesh.mRNA.6;pacid=21934044;longest=1;Parent=C... 0
ChrUn.fgenesh.gene.8 0 32572
585150
552.6 24 r 11 PF03732 PTHR11439 AT5G48050.1 ... 0
ChrSy.fgenesh.gene.7 0 40271
541130
500.9 7 f 11 PF00665,PF07727 PTHR11439 AT4G23160.1 CRK8 cysteine-rich RLK (RECEPTOR-l... 0
ChrUn.fgenesh.gene.9 0 41615
626397
584.8 5 r 8 ID=PAC:21882513;Name=ChrUn.fgenesh.mRNA.9;pacid=21882513;longest=1;Parent=C... 0
ChrSy.fgenesh.gene.8 0 44530
589999
545.5 8 f 11 ID=PAC:21934017;Name=ChrSy.fgenesh.mRNA.8;pacid=21934017;longest=1;Parent=C... 0
ChrSy.fgenesh.gene.9 0 46518
47000
0.5 0 f 1 ID=PAC:21934012;Name=ChrSy.fgenesh.mRNA.9;pacid=21934012;longest=1;Parent=C... 0
LOC_Os01g01010 1 2903
10817
7.9 11 f 2 PF00566 PTHR22957 AT2G43490.6 Ypt/Rab-GAP domain of gyp1p superfamily p... 1 0.89
LOC_Os01g01019 1 11218
12435
1.2 1 f 1 ID=PAC:21907068;Name=LOC_Os01g01019.1;pacid=21907068;longest=1;Parent=LOC_O... 1.15 1.05
LOC_Os01g01030 1 12648
15915
3.3 4 f 1 PF07732,PF00394,PF07731 PTHR11709 KOG1263 AT5G48450.1 sks3 SKU5 similar ... 1 0.98
LOC_Os01g01040 1 16292
20323
4 7 f 4 AT5G16520.1 ... 0.99 0.99
LOC_Os01g01050 1 22841
26971
4.1 5 f 2 PF01424 ... 0.96 0.99
LOC_Os01g01060 1 27136
28651
1.5 3 f 1 PF00177 PTHR11205 KOG3291 K02989 AT2G37270.1 ATRPS5B,RPS5B ribosomal prote... 1 0.97
LOC_Os01g01070 1 29818
34493
4.7 13 f 3 PF07889 AT1G24265.1 Protein of unknown function (DUF1664)... 0.91 0.95
LOC_Os01g01080 1 35581
41180
5.6 14 f 3 PF00282,PF00266 PTHR11999 KOG1383 4.1.2.27 K01634 AT1G27980.1 ATDPL1,DPL1 d... 1 1
LOC_Os01g01090 1 44595
47526
2.9 7 f 1 PF04195 ... 0
LOC_Os01g01100 1 47856
53412
5.6 4 r 1 PF00078,PF00665 PTHR10178 ATMG00860.1 DNA/RNA polymerases superfamily p... 0
LOC_Os01g01110 1 57082
57972
0.9 0 f 1 PF07714,PF00069 PTHR23258 AT1G23540.1 AtPERK12,IGI1 Protein kinase super... 0
LOC_Os01g01115 1 58658
61090
2.4 0 f 1 PF01535 PTHR10483 AT3G02010.1 Pentatricopeptide repeat (PPR) superfamil... 0.02 0.61
LOC_Os01g01120 1 62059
63576
1.5 3 f 1 PTHR20371 KOG2630 AT5G53850.2 haloacid dehalogenase-like hydrolase famil... 1 0.96
LOC_Os01g01130 1 63244
66302
3.1 6 r 1 PTHR13403 KOG3132 K13151 AT4G24880.1 ... 1 1
LOC_Os01g01140 1 69675
70131
0.5 1 f 1 ID=PAC:21903244;Name=LOC_Os01g01140.1;pacid=21903244;longest=1;Parent=LOC_O... 0
LOC_Os01g01150 1 72775
79938
7.2 4 f 3 PF00630,PF00076 PTHR10432 KOG4676 AT3G23900.1 RNA recognition motif (RRM... 1 0.98
LOC_Os01g01160 1 82428
84302
1.9 1 f 1 PF00226 PTHR11821 AT4G13830.2 J20 DNAJ-like 20... 0.68 0.27
LOC_Os01g01170 1 85337
88844
3.5 6 f 1 AT3G23740.1 ... 1 0.96
LOC_Os01g01180 1 88986
89204
0.2 0 r 1 PF11820 AT5G63500.1 Protein of unknown function (DUF 3339)... 0
LOC_Os01g01190 1 89653
91521
1.9 0 r 1 PF04185 AT3G48610.1 NPC6 non-specific phospholipase C6... 1 0.96
LOC_Os01g01200 1 95499
98558
3.1 6 f 1 PF04195 ... 0
LOC_Os01g01210 1 99171
100681
1.5 1 r 1 PTHR10178 ... 0
LOC_Os01g01230 1 105872
106534
0.7 0 f 1 PF04195 ... 0
LOC_Os01g01240 1 108618
114983
6.4 2 f 1 PF03732,PF08284,PF09668,PF00078,PF00665,PF00385 PTHR10178 ATMG00860.1 D... 0
LOC_Os01g01250 1 118081
120671
2.6 1 f 1 PF04094 ... 0
LOC_Os01g01260 1 121302
127457
6.2 1 r 1 PF03732,PF00078,PF00075,PF00665 PTHR10178 AT3G01410.1 Polynucleotidyl t... 0
LOC_Os01g01270 1 128897
133559
4.7 5 r 1 PF03732 PTHR10178 ... 0
LOC_Os01g01280 1 134291
135685
1.4 2 f 1 AT4G24930.1 thylakoid lumenal 17.9 kDa protein, chloroplast... 1 0.96
LOC_Os01g01290 1 139820
141588
1.8 1 f 1 PF00808 PTHR10252 AT5G63470.1 NF-YC4 nuclear factor Y, subunit C4... 0.98 0.97
LOC_Os01g01295 1 141936
144554
2.6 3 f 1 AT5G13100.1 ... 1 0.99
LOC_Os01g01302 1 145577
147852
2.3 8 f 1 PF01202 PTHR21087 AT3G26900.1 ATSKL1,SKL1 shikimate kinase like 1... 1 0.97
LOC_Os01g01307 1 148045
150577
2.5 4 f 2 PF05753 PTHR12861 KOG3317 AT5G14030.1 translocon-associated protein beta... 0.99 0.75
LOC_Os01g01312 1 151409
156500
5.1 6 f 1 PF00176,PF00271 PTHR10799 KOG0387 K10841 AT2G18760.1 CHR8 chromatin remode... 0.97 0.89
LOC_Os01g01320 1 157728
160941
3.2 3 r 1 PF00665,PF07727 PTHR11439 AT4G23160.1 CRK8 cysteine-rich RLK (RECEPTOR-l... 0
LOC_Os01g01330 1 161365
164107
2.7 1 r 1 ID=PAC:21908727;Name=LOC_Os01g01330.1;pacid=21908727;longest=1;Parent=LOC_O... 0
LOC_Os01g01340 1 168470
170389
1.9 2 r 2 PF07207 AT3G26740.1 CCL CCR-like... 0.78 0.92
LOC_Os01g01350 1 170712
173434
2.7 6 r 2 PF03357 PTHR22761 KOG1655 K12198 AT3G10640.1 VPS60.1 SNF7 family protein... 1 0.99
LOC_Os01g01360 1 178310
180812
2.5 0 f 1 PF07690,PF00854 PTHR11654 KOG1237 AT5G13400.1 Major facilitator superfam... 0.88 0.96
LOC_Os01g01369 1 186246
190846
4.6 3 r 1 PF05241 PTHR14207 KOG4826 5.3.3.5 K01824 AT1G20050.1 HYD1 C-8,7 sterol isom... 0.93 0.98
LOC_Os01g01380 1 191036
196287
5.3 5 f 1 PTHR13322:SF2 AT4G20060.1 EMB1895 ARM repeat superfamily protein... 1 1
LOC_Os01g01390 1 197647
200803
3.2 4 f 5 AT1G76660.1 ... 1 1
LOC_Os01g01400 1 201944
206743
4.8 11 f 1 AT5G07380.1 ... 1 0.97
LOC_Os01g01410 1 205710
209606
3.9 3 r 2 PF00059,PF00069,PF07714 PTHR23258 KOG1187 AT1G52310.1 protein kinase fam... 1 0.97
LOC_Os01g01420 1 209771
214229
4.5 7 f 3 PTHR15315 AT3G54360.1 zinc ion binding... 0.92 0.97
LOC_Os01g01430 1 216126
217664
1.5 1 f 1 PF02365 AT3G04070.1 anac047,NAC047 NAC domain containing protein 47... 0.87 0.33
LOC_Os01g01440 1 219011
220776
1.8 1 r 1 ID=PAC:21910831;Name=LOC_Os01g01440.1;pacid=21910831;longest=1;Parent=LOC_O... 0
LOC_Os01g01450 1 226897
229331
2.4 3 f 2 AT2G39050.1 hydroxyproline-rich glycoprotein family protein... 0.96 0.99
LOC_Os01g01460 1 232377
232688
0.3 0 r 1 PTHR10178:SF7 ... 0
LOC_Os01g01470 1 241641
243468
1.8 2 f 1 PF02365 AT5G18270.2 ANAC087 Arabidopsis NAC domain containing protein 8... 1 0.98
LOC_Os01g01484 1 248706
256878
8.2 10 r 4 PF09737 PTHR13374 KOG2558 K10571 AT4G10180.1 ATDET1,DET1,FUS2 light-mediat... 0.99 1
LOC_Os01g01500 1 259607
259909
0.3 0 f 1 PF04788 AT3G19540.1 Protein of unknown function (DUF620)... 0
LOC_Os01g01510 1 261504
268471
7 15 f 2 PF04000,PF09368 PTHR13237 AT2G43650.1 EMB2777 Sas10/U3 ribonucleoprotein... 0.99 0.96
LOC_Os01g01520 1 270145
275084
4.9 1 r 1 PF02458 AT1G27620.1 HXXXD-type acyl-transferase family protein... 0.98 0.98
LOC_Os01g01530 1 276285
277881
1.6 3 r 1 ID=PAC:21907575;Name=LOC_Os01g01530.1;pacid=21907575;longest=1;Parent=LOC_O... 0
LOC_Os01g01540 1 279982
280494
0.5 0 f 1 ID=PAC:21904712;Name=LOC_Os01g01540.1;pacid=21904712;longest=1;Parent=LOC_O... 0
LOC_Os01g01550 1 280846
283924
3.1 4 r 1 PF02458 AT1G27620.1 HXXXD-type acyl-transferase family protein... 0.2 0.06
LOC_Os01g01560 1 284911
292118
7.2 4 r 1 PF02892,PF05699 PTHR23272 AT3G42170.1 BED zinc finger ;hAT family dimer... 0.17 0.4
LOC_Os01g01570 1 288372
292296
3.9 8 f 1 ID=PAC:21906566;Name=LOC_Os01g01570.1;pacid=21906566;longest=1;Parent=LOC_O... 1 1
LOC_Os01g01580 1 292844
293535
0.7 0 f 1 ID=PAC:21910502;Name=LOC_Os01g01580.1;pacid=21910502;longest=1;Parent=LOC_O... 0.85 0.9
LOC_Os01g01590 1 293648
294536
0.9 1 f 1 ID=PAC:21907119;Name=LOC_Os01g01590.1;pacid=21907119;longest=1;Parent=LOC_O... 0
LOC_Os01g01600 1 303103
306800
3.7 6 f 1 AT1G27660.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein... 1 1
LOC_Os01g01610 1 306869
308842
2 3 r 1 PF01521 PTHR10072 KOG1120 K13628 AT2G16710.1 Iron-sulphur cluster biosynt... 0.97 0.98
LOC_Os01g01620 1 309459
313170
3.7 7 r 1 PF00294 PTHR10584 KOG2854 AT1G19600.1 pfkB-like carbohydrate kinase fami... 1 0.98
LOC_Os01g01640 1 319713
322248
2.5 2 f 1 PF03248 PTHR10743 KOG1688 AT4G39220.1 ATRER1A Rer1 family protein... 0.98 0.98
LOC_Os01g01650 1 322556
323948
1.4 1 r 1 PF05368,PF01370,PF01073 PTHR10366 AT1G75290.1 NAD(P)-binding Rossmann-f... 0.94 0.96
LOC_Os01g01660 1 327128
328451
1.3 1 r 1 PF05368,PF01370,PF01073 PTHR10366 AT1G75280.1 NmrA-like negative transc... 0.97 0.95
LOC_Os01g01670 1 330238
332345
2.1 1 r 2 AT5G60030.1 ... 1 0.97
LOC_Os01g01680 1 332667
333689
1 0 r 1 AT2G46630.1 ... 1 0.96
LOC_Os01g01689 1 335809
371191
35.4 77 f 2 PF02259,PF00454,PF02260 PTHR11139 2.7.11.1 K04728 AT3G48190.1 ATATM,ATM at... 0.05 0.05
LOC_Os01g01700 1 371831
374470
2.6 4 f 1 PTHR11210 KOG2930 K03868 AT5G20570.1 ATRBX1,HRT1,RBX1,ROC1 RING-box 1... 1 0.97
LOC_Os01g01710 1 374728
380716
6 11 r 2 PF02670,PF08436 1.1.1.267 K00099 AT5G62790.1 DXR,PDE129 1-deoxy-D-xylulos... 0.91 0.97
LOC_Os01g01720 1 383047
386701
3.7 9 r 2 PF04695 PTHR23058:SF1 K13343 AT5G62810.1 ATPEX14,PED2,PEX14 peroxin 14... 0.88 0.95
LOC_Os01g01730 1 390051
390623
0.6 0 f 1 ID=PAC:21904418;Name=LOC_Os01g01730.1;pacid=21904418;longest=1;Parent=LOC_O... 0
LOC_Os01g01740 1 392081
396651
4.6 2 r 1 PF07714,PF00069 PTHR23257 KOG0192 AT1G62400.1 HT1 Protein kinase superfam... 0.83 0.65
LOC_Os01g01760 1 403692
404402
0.7 0 r 1 ID=PAC:21906962;Name=LOC_Os01g01760.1;pacid=21906962;longest=1;Parent=LOC_O... 0
LOC_Os01g01770 1 409700
410818
1.1 1 f 1 PF00929 PTHR12801 KOG2249 AT5G40310.1 Exonuclease family protein... 0
LOC_Os01g01780 1 412579
415830
3.3 6 f 1 PF03016 PTHR11062 KOG1021 AT4G16745.1 Exostosin family protein... 1 0.97
LOC_Os01g01790 1 416241
420497
4.3 10 r 2 PF12014 AT1G27510.1 Protein of unknown function (DUF3506)... 0.96 0.96
LOC_Os01g01800 1 422462
431692
9.2 20 f 2 AT5G08440.1 ... 0.99 0.97
LOC_Os01g01810 1 432435
432752
0.3 0 r 1 ID=PAC:21903621;Name=LOC_Os01g01810.1;pacid=21903621;longest=1;Parent=LOC_O... 1 0.78
LOC_Os01g01830 1 437613
449137
11.5 16 f 1 PF02897,PF00326 PTHR11757 KOG2237 3.4.21.26 K01322 AT1G76140.1 Prolyl olig... 1 1
LOC_Os01g01840 1 455512
460716
5.2 4 f 1 PF00010 AT1G10586.1 basic helix-loop-helix (bHLH) DNA-binding superfam... 0.48 0.34

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