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GmGDB v.1 Loci/Annotations  ?

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Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
(click to view)
Annotate it!
Glyma01g00270 1 51481
61502
10 16 r 1 PTHR18968:SF3 AT1G68890.1 2-oxoglutarate decarboxylase/ hydro-lyase/ magnes... 0.2 0.06
Glyma01g00300 1 90693
95580
4.9 2 r 2 PF10551,PF04434 AT4G38170.1 FRS9 FRS9 (FAR1-related sequence 9); zinc ion b... 0.63 0.5
Glyma01g00320 1 116300
127990
11.7 3 f 3 PF03101,PF10551,PF04434 AT4G38180.1 FRS5 FRS5 (FAR1-related sequence 5); zi... BCB 568,BIO468 0.82 0.48
Glyma01g00380 1 170877
193446
22.6 18 f 1 AT5G58100.1 unknown protein... 0.77 0.73
Glyma01g00400 1 196424
202040
5.6 6 f 4 PF09229 AT5G58110.1 ATPase activator/ chaperone binding... 0.99 0.95
Glyma01g00410 1 205764
213610
7.8 6 f 1 PF03040 AT4G31040.1 proton extrusion protein-related... 0.78 0.53
Glyma01g00420 1 221875
225821
3.9 4 r 1 PF02985 AT2G07170.1 binding... 0.82 0.76
Glyma01g00430 1 227279
237945
10.7 18 r 2 PF00432 KOG0497 5.4.99.8 K01853 AT2G07050.1 CAS1 CAS1 (cycloartenol synthas... 0.98 0.97
Glyma01g00440 1 244179
244560
0.4 0 f 1 PF02453 PTHR10994 AT3G19460.1 reticulon family protein (RTNLB11)... 0
Glyma01g00450 1 248919
260637
11.7 17 f 1 PF00432 KOG0497 5.4.99.8 K01853 AT2G07050.1 CAS1 CAS1 (cycloartenol synthas... 0.2 0.17
Glyma01g00460 1 260800
269340
8.5 17 r 1 PF00400,PF04192 PTHR13889 KOG1539 AT4G04940.1 transducin family protein / W... 0.79 0.64
Glyma01g00470 1 269735
273995
4.3 4 f 1 AT3G10572.1 3-phosphoinositide-dependent protein kinase-1, putative... 1 0.96
Glyma01g00480 1 275574
278576
3 1 f 1 PF08263,PF00560 PTHR23258 AT5G35390.1 leucine-rich repeat transmembrane pro... 0.63 0.28
Glyma01g00490 1 281402
284938
3.5 7 f 1 PF00582,PF00069,PF07714 PTHR23258 KOG1187 AT2G24370.1 ATP binding / kinase/... 0
Glyma01g00500 1 286057
288682
2.6 1 f 1 PF04570 AT5G20700.1 senescence-associated protein-related... 1 0.98
Glyma01g00510 1 291487
297462
6 13 r 1 PF02362,PF06507,PF02309 AT1G19220.1 ARF19 ARF19 (AUXIN RESPONSE FACTOR 19);... 0.6 0.48
Glyma01g00520 1 303950
308127
4.2 5 r 1 PF07496,PF01429 AT5G35330.1 MBD02 MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN ... 0.71 0.67
Glyma01g00530 1 318707
322901
4.2 3 f 1 PF02386 AT4G10310.1 HKT1 HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium ion ... 0.61 0.2
Glyma01g00540 1 329250
331862
2.6 3 f 1 AT2G06925.1 PLA2-ALPHA PLA2-ALPHA; phospholipase A2... 0.97 0.96
Glyma01g00550 1 332865
334841
2 6 r 1 AT4G20010.1 PTAC9 PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9); single-strand... 0
Glyma01g00560 1 335283
337035
1.8 0 f 1 PF01663 PTHR10151 KOG2645 AT4G29680.1 type I phosphodiesterase/nucleotide p... 1 0.96
Glyma01g00570 1 339964
343362
3.4 3 f 1 PF00085 PTHR10438 KOG0907 AT4G29670.1 ACHT2 thioredoxin family protein... 1 0.99
Glyma01g00580 1 344018
344555
0.5 0 f 1 PF03208 PTHR19317 KOG3142 AT1G55190.1 PRA7 PRA7... 0
Glyma01g00590 1 346640
350011
3.4 7 f 1 PF08241 PTHR10108 AT4G29590.1 methyltransferase... 0.5 0.41
Glyma01g00600 1 363449
365232
1.8 2 r 1 PF00098,PF00249 AT5G56840.1 DNA-binding family protein... 0.98 0.96
Glyma01g00610 1 370004
372382
2.4 3 f 2 AT4G18400.1 unknown protein... 0.98 0.95
Glyma01g00620 1 372780
375286
2.5 7 r 1 PF00132 AT4G29540.1 bacterial transferase hexapeptide repeat-containing pro... 0
Glyma01g00630 1 377144
378834
1.7 2 f 1 AT5G56780.1 unknown protein... 0
Glyma01g00640 1 379246
381802
2.6 2 f 1 PF01535 PTHR10483 AT2G15690.1 pentatricopeptide (PPR) repeat-containing pro... BCB 568,BIO468 0.92 0.33 1 Impr
Glyma01g00650 1 381847
384315
2.5 9 r 1 PF00153 PTHR11896 KOG0752 AT4G26180.1 mitochondrial substrate carrier famil... 0
Glyma01g00660 1 384776
386985
2.2 10 f 1 PF03096 PTHR11034 KOG2931 AT5G56750.1 Ndr family protein... 0
Glyma01g00670 1 387861
390922
3.1 4 r 1 AT5G11780.1 unknown protein... BCB 568,BIO468 0.81 0.61
Glyma01g00680 1 391613
396922
5.3 6 f 1 AT4G29520.1 unknown protein... 1 0.97
Glyma01g00690 1 397410
400521
3.1 8 r 2 PF08242,PF08241 PTHR11006 KOG1499 K00599 AT4G29510.1 PRMT11 PRMT11 (ARGININ... 1 0.97
Glyma01g00700 1 411368
413183
1.8 2 f 1 PF00155 PTHR11751 KOG0256 AT4G26200.1 ACS7 ACS7; 1-aminocyclopropane-1-carb... 0
Glyma01g00710 1 415331
417645
2.3 2 f 1 AT4G29460.1 phospholipase A2 gamma, secretory low molecular weight... 1 0.99
Glyma01g00720 1 419047
423878
4.8 9 f 1 PF03398 PTHR12161 KOG2027 AT2G19710.1 unknown protein... 0.49 0.2
Glyma01g00730 1 425547
427838
2.3 5 f 4 PF01596 PTHR10509 KOG1663 AT4G26220.1 caffeoyl-CoA 3-O-methyltransferase, p... 0.96 0.98
Glyma01g00740 1 429473
430676
1.2 2 f 2 PF01198 PTHR10956 KOG0893 K02910 AT2G19740.1 60S ribosomal protein L31 (RPL... 0.91 0.95
Glyma01g00750 1 431194
433007
1.8 5 r 1 PF01535 PTHR10483 AT3G14330.1 pentatricopeptide (PPR) repeat-containing pro... 0
Glyma01g00760 1 434482
437551
3.1 7 f 2 PF03357 PTHR22761 KOG1656 AT4G29160.1 SNF7.1 SNF7.1... 0.92 0.98
Glyma01g00770 1 439160
439492
0.3 1 r 1 PF06376 AT3G61640.1 AGP20 AGP20... 1 0.9
Glyma01g00780 1 442090
445177
3.1 9 r 1 PF03962 KOG3433 AT4G29170.1 ATMND1 ATMND1... 1 0.98
Glyma01g00790 1 447263
453180
5.9 12 f 1 PF00560,PF07714,PF00069 PTHR23258 KOG1187 AT4G29450.1 leucine-rich repeat p... 0.64 0.44
Glyma01g00800 1 454185
455388
1.2 3 f 1 PTHR22761 KOG1656 AT4G29160.1 SNF7.1 SNF7.1... 0
Glyma01g00810 1 458304
459177
0.9 2 r 1 PF00249 PTHR10641 AT5G65790.1 MYB68 MYB68 (MYB DOMAIN PROTEIN 68); DNA bind... BCB 568,BIO468 0.99 0.6 4 ImprExt
Glyma01g00820 1 464751
466345
1.6 0 r 1 PF00642 PTHR14493 KOG1595 AT2G19810.1 zinc finger (CCCH-type) family protei... 0.97 0.96
Glyma01g00830 1 491322
493622
2.3 1 r 1 PF03108,PF10551,PF04434,PF00098 AT1G64255.1 SWIM zinc finger family protein... 0
Glyma01g00840 1 505409
508255
2.8 9 f 4 PF05153 PTHR12588 KOG1573 AT2G19800.1 MIOX2 MIOX2 (MYO-INOSITOL OXYGENASE 2... 0.96 0.96
Glyma01g00850 1 512040
516295
4.3 6 f 1 PF01019 PTHR11686 KOG2410 AT4G29210.1 GGT4 GGT4 (GAMMA-GLUTAMYL TRANSPEPTID... 0.48 0.44
Glyma01g00860 1 518297
520281
2 3 r 3 PF01217 PTHR11753 KOG0934 AT2G19790.1 clathrin adaptor complex small chain ... 1 0.96
Glyma01g00870 1 523885
528879
5 12 r 2 PF00365 PTHR13697 KOG2440 2.7.1.11 K00850 AT4G26270.1 PFK3 PFK3 (PHOSPHOFRU... 0.87 0.89
Glyma01g00880 1 544680
550458
5.8 6 f 1 PF02365 AT4G29230.1 anac075 anac075 (Arabidopsis NAC domain containing prot... 0.71 0.71
Glyma01g00890 1 560069
562443
2.4 1 f 1 PF08263,PF00560 PTHR23258 AT4G29240.1 leucine-rich repeat family protein / ... 0.96 0.32
Glyma01g00900 1 562675
565921
3.2 5 r 1 PF03767 AT4G29260.1 acid phosphatase class B family protein... 0
Glyma01g00910 1 567591
571678
4.1 1 r 1 PF06219 AT4G29310.1 unknown protein... 0
Glyma01g00920 1 576504
579920
3.4 2 f 1 PF00235 PTHR11604 KOG1755 AT4G29340.1 PRF4 PRF4 (PROFILIN 4); actin binding... 0 0
Glyma01g00930 1 585739
587056
1.3 1 f 1 AT5G56550.1 OXS3 OXS3 (OXIDATIVE STRESS 3)... 1 0.97
Glyma01g00940 1 588234
598356
10.1 17 r 1 PF03485,PF00750,PF05746 PTHR11956 KOG4426 AT4G26300.1 emb1027 emb1027 (embr... 0.78 0.75
Glyma01g00950 1 599225
599816
0.6 0 f 1 PTHR12626:SF2 ... 0.97 0.69
Glyma01g00960 1 604339
612760
8.4 17 f 3 PF03485,PF00750,PF05746 PTHR11956 KOG4426 AT4G26300.1 emb1027 emb1027 (embr... 1 0.98
Glyma01g00980 1 627759
641836
14.1 24 f 1 PF04565,PF04566,PF04567,PF00562,PF04560 PTHR20856 2.7.7.6 K03021 AT5G45140.... 0.78 0.68
Glyma01g00990 1 643608
651049
7.4 11 f 1 PF00069,PF02985,PF00400 PTHR23257 KOG1240 2.7.11.1 K08333 AT4G29380.1 prote... 0.13 0.31
Glyma01g01000 1 652530
658011
5.5 11 r 2 PF02225,PF04389,PF04253 PTHR10404 KOG2195 AT5G19740.1 peptidase M28 family ... 0.75 0.85
Glyma01g01010 1 663913
668593
4.7 4 f 2 PF01095 3.1.1.11 K01051 AT5G19730.1 pectinesterase family protein... 0.2 0.22
Glyma01g01020 1 670903
674313
3.4 4 f 1 AT3G51100.1 unknown protein... 0.99 0.97
Glyma01g01030 1 681750
683275
1.5 3 r 1 PF00612 AT3G16490.1 IQD26 IQD26 (IQ-domain 26); calmodulin binding... 0
Glyma01g01040 1 707274
708720
1.4 5 f 1 ID=PAC:16242987;Name=Glyma01g01040.1;PACid=16242987;Parent=Glyma01g01040... 0.44 0.13
Glyma01g01050 1 707329
708360
1 0 r 1 PF01554 PTHR11206 AT4G29140.1 MATE efflux protein-related... 0.49 0.75
Glyma01g01060 1 729912
735082
5.2 9 f 3 PF00349,PF03727 PTHR19443 KOG1369 2.7.1.1 K00844 AT4G29130.1 HXK1 HXK1 (HEX... 1 0.95
Glyma01g01070 1 736353
740661
4.3 8 f 1 PF00349,PF03727 PTHR19443 KOG1369 2.7.1.1 K00844 AT4G29130.1 HXK1 HXK1 (HEX... 0.48 0.35
Glyma01g01080 1 741725
745125
3.4 1 r 1 PF08263,PF00560,PF00069,PF07714 PTHR23258 KOG1187 AT5G25930.1 leucine-rich ... 0.53 0.81
Glyma01g01090 1 746970
750314
3.3 1 r 1 PF08263,PF00560,PF00069,PF07714 PTHR23258 KOG1187 AT5G25930.1 leucine-rich ... 0
Glyma01g01110 1 760040
761175
1.1 0 r 1 PF02466 PTHR10485 KOG1652 AT2G37410.1 ATTIM17-2 ATTIM17-2; P-P-bond-hydroly... 0.99 0.98
Glyma01g01120 1 764473
771585
7.1 19 f 1 PF01426,PF00145,PF00385 PTHR10629 2.1.1.37 K00558 AT1G69770.1 CMT3 CMT3 (ch... 0.37 0.41
Glyma01g01130 1 775406
779415
4 13 f 1 PF00535 KOG2547 AT2G19880.1 ceramide glucosyltransferase, putative... 0.26 0.17
Glyma01g01140 1 779768
783425
3.7 6 r 2 PF00173 PTHR19359 AT1G60660.1 CB5LP CB5LP (CYTOCHROME B5-LIKE PROTEIN); hem... 1 0.98
Glyma01g01150 1 786891
790824
3.9 4 f 1 PF06911 PTHR21068 AT4G15450.1 unknown protein... 0
Glyma01g01160 1 801989
811935
9.9 7 f 1 PF00664,PF00005 PTHR19242 KOG0055 AT3G28345.1 ABC transporter family protei... 0
Glyma01g01170 1 817761
822867
5.1 10 f 2 PF03171 PTHR10209 KOG0143 K06892 AT1G35190.1 oxidoreductase, 2OG-Fe(II) oxy... 0.95 0.95
Glyma01g01180 1 826833
831684
4.9 18 r 3 PF00390,PF03949 PTHR23406 KOG1257 1.1.1.40 K00029 AT1G79750.1 ATNADP-ME4 AT... 0.98 0.95
Glyma01g01190 1 837867
839526
1.7 1 r 1 PF02731 PTHR12096 KOG2441 K06063 AT1G77180.1 chromatin protein family... 1 0.3
Glyma01g01210 1 841688
852891
11.2 16 r 1 PF05183 PTHR23079 KOG0988 AT2G19910.1 RNA-dependent RNA polymerase family p... 0.33 0.25
Glyma01g01220 1 861799
864306
2.5 2 f 2 KOG4708 AT3G18760.1 ribosomal protein S6 family protein... 0.95 0.82
Glyma01g01230 1 864986
873299
8.3 22 r 1 PTHR13815 KOG4677 AT2G19950.1 GC1 GC1 (Golgin Candidate 1)... 0.67 0.63
Glyma01g01240 1 882439
883249
0.8 0 r 1 AT1G52140.1 unknown protein... 1 0.95
Glyma01g01260 1 901471
902792
1.3 0 f 1 PF10604 AT2G25770.1 unknown protein... 0.98 0.96
Glyma01g01270 1 908209
916862
8.7 22 f 1 PF02516 PTHR13872 KOG2292 AT5G19690.1 STT3A STT3A (STAUROSPORIN AND TEMPERA... 0.54 0.53
Glyma01g01280 1 919767
925783
6 6 r 1 PF05664 AT2G25800.1 unknown protein... 0.45 0.28
Glyma01g01290 1 934524
936533
2 4 f 1 AT4G13660.1 PRR2 PRR2 (PINORESINOL REDUCTASE 2); pinoresinol reductase... BCB 568,BIO468 0.8 0.32
Glyma01g01300 1 937365
939890
2.5 5 r 1 PF00249 AT5G45580.1 transcription factor... 0.11 0.06
Glyma01g01310 1 952598
956615
4 1 f 2 ID=PAC:16243020;Name=Glyma01g01310.1;PACid=16243020;Parent=Glyma01g01310... 0.96 0.66
Glyma01g01330 1 959544
963251
3.7 3 f 1 PF01632 AT5G45590.1 unknown protein... 0.99 0.98
Glyma01g01340 1 967052
971230
4.2 6 r 1 PF04172 AT1G32080.1 membrane protein, putative... 0.95 0.96
Glyma01g01350 1 972976
978178
5.2 5 r 1 PF00501 PTHR11968 KOG1176 AT4G19010.1 4-coumarate--CoA ligase family protei... 0.34 0.52
Glyma01g01360 1 980335
987294
7 10 r 1 PF02714 PTHR13018 KOG1134 AT1G32090.1 early-responsive to dehydration prote... 0.78 0.55
Glyma01g01370 1 992725
997069
4.3 4 r 1 PF00485 PTHR10285 KOG4203 2.7.1.19 K00855 AT1G32060.1 PRK PRK (PHOSPHORIBUL... 1 0.99
Glyma01g01380 1 1000911
1006549
5.6 11 r 2 PF04144 PTHR10687 KOG3088 AT1G32050.1 secretory carrier membrane protein (S... 0.98 0.97
Glyma01g01390 1 1008976
1013477
4.5 12 f 1 PF00270,PF00271 PTHR10967 KOG0331 AT1G31970.1 STRS1 STRS1 (STRESS RESPONSE ... 1 0.95
Glyma01g01400 1 1018633
1021550
2.9 2 f 1 PF00931,PF00560 PTHR23155 KOG4658 AT3G07040.1 RPM1 RPM1 (RESISTANCE TO P. S... BCB 568,BIO468 1 0.3

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