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BdGDB v.1 Loci/Annotations  ?

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Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
(click to view)
Annotate it!
Bradi1g00200 1 10581
11638
1.1 1 f 1 PF02798,PF00043 PTHR11260 KOG0406 AT1G10360.1 ATGSTU18,GST29,GSTU18 gluta... 0
Bradi1g00210 1 18479
23039
4.6 9 f 1 PF00400 PTHR19857 KOG0296 AT1G71840.1 transducin family protein / WD-40 ... 0
Bradi1g00220 1 55668
56319
0.7 0 f 1 PF03514 AT1G07530.1 ATGRAS2,GRAS2,SCL14 SCARECROW-like 14 LOC_Os12g3849... 0
Bradi1g00227 1 59775
61313
1.5 0 f 1 PF00931 AT3G07040.1 RPM1,RPS3 NB-ARC domain-containing disease resistan... 0.54 0.76
Bradi1g00237 1 94978
100493
5.5 4 f 1 PF00931 KOG4658 AT3G14470.1 NB-ARC domain-containing disease resistance... 0
Bradi1g00247 1 104574
106621
2 3 r 1 PTHR21251:SF7 AT4G31360.1 selenium binding LOC_Os11g47770.1 selT/selW/... 0
Bradi1g00260 1 113302
121778
8.5 14 f 1 PF00560,PF07714,PF00069 PTHR23258 AT4G29990.1 Leucine-rich repeat trans... 0.17 0.1
Bradi1g00270 1 123699
126002
2.3 4 f 2 PF00069,PF07714 PTHR23258 AT4G00970.1 CRK41 cysteine-rich RLK (RECEPTOR-... 0.7 0.61
Bradi1g00280 1 126302
133805
7.5 11 r 1 PF01554 PTHR11206 KOG1347 AT1G33110.1 MATE efflux family protein LOC_Os1... 0
Bradi1g00290 1 150594
153007
2.4 2 r 1 PTHR22930 KOG4585 AT3G55350.1 PIF / Ping-Pong family of plant transposas... 0
Bradi1g00300 1 173241
174712
1.5 1 f 1 PF01734 PTHR18958:SF28 KOG0513 AT2G26560.1 PLA IIA,PLA2A,PLP2 phospholipa... 0
Bradi1g00310 1 201331
202797
1.5 4 r 1 LOC_Os07g45630.1 retrotransposon protein, putative, Ty3-gypsy subclass, ex... 0
Bradi1g00320 1 221297
224362
3.1 2 f 1 LOC_Os09g12060.1 expressed protein... 0
Bradi1g00330 1 228601
230810
2.2 5 f 1 LOC_Os12g09220.1 expressed protein... 0
Bradi1g00340 1 245977
247080
1.1 1 f 1 LOC_Os07g02490.1 retrotransposon protein, putative, unclassified, expresse... 0
Bradi1g00350 1 282694
283548
0.9 0 f 1 PF05000,PF04998,PF04992 PTHR19376 AT4G35800.1 NRPB1,RNA_POL_II_LS,RNA_PO... 0
Bradi1g00360 1 284014
284531
0.5 1 f 1 PF04990,PF04998 PTHR19376 AT4G35800.1 NRPB1,RNA_POL_II_LS,RNA_POL_II_LSR... 0
Bradi1g00370 1 306058
308922
2.9 2 f 1 LOC_Os11g09940.1 expressed protein... 0.35 0.76
Bradi1g00380 1 309730
312055
2.3 3 f 1 PF01535 PTHR10483 AT3G02010.1 Pentatricopeptide repeat (PPR) superfamil... 0
Bradi1g00390 1 324003
329816
5.8 13 f 1 PTHR12984 AT2G40730.1 Protein kinase family protein with ARM repeat dom... 0
Bradi1g00400 1 334416
335651
1.2 0 r 1 PF02485 AT1G10280.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltr... 0
Bradi1g00410 1 339782
342148
2.4 1 r 1 PF07762 LOC_Os01g56900.2 expressed protein... 0.76 0.91
Bradi1g00417 1 371140
372521
1.4 0 r 1 PF07893 LOC_Os07g49050.1 expressed protein... 0
Bradi1g00427 1 373745
379286
5.5 13 f 1 PF06733,PF06777 PTHR11472 KOG1131 AT1G03190.1 ATXPD,UVH6 RAD3-like DNA-bi... 0
Bradi1g00440 1 379610
380317
0.7 0 f 1 AT1G04625.1 Polynucleotidyl transferase, ribonuclease H-like superfamily p... 0
Bradi1g00450 1 383621
387469
3.8 10 r 2 PF00566 PTHR22957 KOG2197 AT4G27100.1 Ypt/Rab-GAP domain of gyp1p superf... 0.82 0.77
Bradi1g00460 1 388064
396012
7.9 17 r 2 PF00005,PF01061,PF08370 PTHR19241 KOG0065 AT1G66950.1 ATPDR11,PDR11 pleio... 0.32 0.34
Bradi1g00470 1 399150
402659
3.5 7 f 2 PF02798 PTHR11260 KOG0867 AT5G41210.1 ATGSTT1,GST10,GSTT1 glutathione S-t... 0.81 0.92
Bradi1g00480 1 400545
407267
6.7 10 r 1 AT5G23890.1 LOC_Os03g64400.1 oxidoreductase/ transition metal ion bindin... 0.32 0.21
Bradi1g00490 1 411505
412921
1.4 4 f 1 AT5G41470.1 Nuclear transport factor 2 (NTF2) family protein LOC_Os03g6438... 0.91 0.42
Bradi1g00497 1 416266
418233
2 4 r 1 PTHR22844:SF11 AT4G00755.1 F-box family protein LOC_Os03g64360.2 OsFBX... 0.96 0.97
Bradi1g00510 1 422744
424450
1.7 4 f 1 PF03194 PTHR12375 KOG0796 AT5G51410.1 LUC7 N_terminus domain-containing ... 0
Bradi1g00517 1 425618
430780
5.2 10 r 4 PF00076 PTHR10432 KOG0117 AT2G44710.1 RNA-binding (RRM/RBD/RNP motifs) f... 0.72 0.84
Bradi1g00530 1 435299
438047
2.7 7 f 1 PF00581 PTHR18838 KOG1530 AT1G17850.2 Rhodanese/Cell cycle control phosp... 0
Bradi1g00540 1 440902
442355
1.5 1 f 1 PF00403 PTHR22814 KOG1603 AT5G24580.1 Heavy metal transport/detoxificati... 0
Bradi1g00550 1 442977
444093
1.1 0 r 1 PF00230 PTHR19139 KOG0223 AT3G54820.1 PIP2;5,PIP2D plasma membrane intrin... 0
Bradi1g00560 1 445389
452675
7.3 12 r 3 AT5G43310.2 COP1-interacting protein-related LOC_Os03g64320.1 expressed p... 0.97 0.97
Bradi1g00567 1 455520
462813
7.3 16 r 1 PF08513,PF00400 PTHR22847 KOG0266 AT2G32700.6 LUH LEUNIG_homolog LOC_Os03... 0.78 0.72
Bradi1g00580 1 463748
468001
4.3 4 r 1 PF00564,PF07714,PF00069 PTHR23257 AT1G79570.1 Protein kinase superfamil... 0
Bradi1g00587 1 471635
473601
2 1 r 1 PF07992,PF01494,PF00743 PTHR23023 KOG1399 AT4G28720.1 YUC8 Flavin-binding... 0
Bradi1g00600 1 481247
482062
0.8 0 r 1 PF05512 AT1G04560.1 AWPM-19-like family protein LOC_Os07g24000.1 AWPM... 0.91 0.94
Bradi1g00607 1 485291
498694
13.4 35 f 1 PF00063,PF00612,PF01843 PTHR13140 KOG0160 AT1G04160.1 ATXIB,XI-8,XI-B,XIB... 0
Bradi1g00620 1 500221
502628
2.4 5 f 1 PF00179 PTHR11621 KOG0416 AT1G63800.1 UBC5 ubiquitin-conjugating enzyme 5... 0.97 0.98
Bradi1g00630 1 502638
503538
0.9 0 r 1 ... 0
Bradi1g00640 1 504334
505980
1.6 0 f 1 ... 0
Bradi1g00650 1 515951
516775
0.8 2 f 1 AT1G25270.1 nodulin MtN21 /EamA-like transporter family protein LOC_Os08g3... 0
Bradi1g00660 1 517657
518648
1 3 f 1 PF00892 AT5G64700.1 nodulin MtN21 /EamA-like transporter family protei... 0
Bradi1g00670 1 521659
522548
0.9 0 f 1 PF00847 AT3G23240.1 ATERF1,ERF1 ethylene response factor 1 LOC_Os03g642... 0
Bradi1g00677 1 525723
528532
2.8 5 r 1 PF04266 PTHR12963 AT2G20410.1 RNA-binding ASCH domain protein LOC_Os03g... 0.01 0
Bradi1g00690 1 534432
535942
1.5 1 f 1 PF00149 PTHR11668 KOG0374 AT2G29400.1 PP1-AT,TOPP1 type one protein phosp... 0
Bradi1g00700 1 542752
544677
1.9 0 f 1 PF00083,PF07690 PTHR11600 KOG0252 K08176 AT3G54700.1 PHT1;7 phosphate tran... 0.86 0.91
Bradi1g00710 1 545836
549477
3.6 7 r 1 PF04784 PTHR23054 AT5G60720.1 Protein of unknown function, DUF547 LOC_O... 0.67 0.64
Bradi1g00720 1 552185
555346
3.2 10 f 2 PF02338 PTHR12419 KOG2605 AT5G04250.1 Cysteine proteinases superfamily p... 0
Bradi1g00730 1 555714
559377
3.7 7 f 1 PF00118 PTHR11353 KOG0356 AT2G28000.1 CH-CPN60A,CPN60A,SLP chaperonin-60a... 0.72 0.72
Bradi1g00750 1 560682
564352
3.7 8 f 1 PF04539,PF04542,PF04545 AT2G36990.1 ATSIG6,SIG6,SIGF,SOLDAT8 RNApolymer... 0.98 1
Bradi1g00760 1 565638
570467
4.8 10 f 1 PF00005,PF01061 PTHR19241 KOG0061 AT2G28070.1 ABC-2 type transporter fam... 0
Bradi1g00770 1 577726
579029
1.3 3 r 1 PF00403 PTHR22814 KOG1603 AT5G03380.1 Heavy metal transport/detoxificati... 0
Bradi1g00780 1 579859
581594
1.7 0 r 1 PF01554 PTHR11206 KOG1347 AT4G22790.1 MATE efflux family protein LOC_Os0... 0
Bradi1g00790 1 586495
588596
2.1 3 r 1 PF00657 PTHR22835:SF27 AT1G75900.1 GDSL-like Lipase/Acylhydrolase super... 0
Bradi1g00800 1 590133
590924
0.8 0 r 1 PF07893 LOC_Os05g03490.1 expressed protein... 0
Bradi1g00807 1 591502
592877
1.4 1 r 1 PF00657 PTHR22835:SF27 AT1G75900.1 GDSL-like Lipase/Acylhydrolase super... 0
Bradi1g00820 1 594037
597877
3.8 4 r 1 PF05383 PTHR22792 AT5G66100.1 winged-helix DNA-binding transcription fa... 0.8 0.89
Bradi1g00830 1 599949
602041
2.1 6 f 1 PF07386 AT3G60810.1 LOC_Os03g64140.1 expressed protein... 0.96 0.93
Bradi1g00840 1 605902
607863
2 0 f 1 PF11961,PF05003 AT5G51670.1 Protein of unknown function (DUF668) LOC_O... 0
Bradi1g00847 1 610970
615963
5 9 r 1 PF00400 PTHR22847 KOG2096 AT4G00090.1 Transducin/WD40 repeat-like superf... 0
Bradi1g00860 1 616224
621155
4.9 11 r 1 PF04227 PTHR10584 AT1G50510.1 indigoidine synthase A family protein LOC... 0.8 0.86
Bradi1g00867 1 621420
622308
0.9 1 f 1 PF00181,PF03947 PTHR13691 KOG2309 AT4G36130.1 Ribosomal protein L2 famil... 0
Bradi1g00880 1 623143
623742
0.6 0 f 1 LOC_Os03g64100.1 expressed protein... 0
Bradi1g00887 1 625801
634726
8.9 30 f 1 PF03810,PF08389,PF08767 PTHR11223 KOG2020 K14290 AT5G17020.1 ATCRM1,ATXPO1... 0.5 0.42
Bradi1g00900 1 637592
638629
1 1 r 1 PF03641 AT5G06300.1 Putative lysine decarboxylase family protein LOC_O... 0.64 0.24
Bradi1g00910 1 641380
642212
0.8 1 f 1 AT1G65000.1 LOC_Os03g64060.1 expressed protein... 0.86 0.92
Bradi1g00920 1 643678
644861
1.2 1 r 1 PF03629 AT4G34215.1 Domain of unknown function (DUF303) LOC_Os03g6405... 0
Bradi1g00930 1 646726
648745
2 1 f 1 AT4G34215.1 Domain of unknown function (DUF303) LOC_Os03g64030.1 recepto... 0.92 0.95
Bradi1g00940 1 649583
652456
2.9 9 f 1 AT4G22890.1 PGR5-LIKE A PGR5-LIKE A LOC_Os03g64020.2 expressed protein... 0.87 0.93
Bradi1g00950 1 659999
661553
1.6 1 f 1 PF03171 PTHR10209 KOG0143 1.14.11.12 K05282 AT4G25420.1 AT2301,ATGA20OX1,GA... 0.58 0.85
Bradi1g00960 1 672678
678601
5.9 7 r 2 PF00931 KOG4658 AT3G14460.1 LRR and NB-ARC domains-containing disease r... 0.64 0.36
Bradi1g00970 1 682482
683291
0.8 2 f 1 AT2G02360.1 AtPP2-B10,PP2-B10 phloem protein 2-B10 LOC_Os12g03740.1 OsFBX4... 0.37 0.11
Bradi1g00980 1 683374
684925
1.6 3 r 2 PF02482 AT5G24490.1 30S ribosomal protein, putative LOC_Os03g63950.1 ... 0.94 0.97
Bradi1g00990 1 685588
691368
5.8 12 r 1 PF00571 PTHR13780 KOG1764 AT1G09020.1 ATSNF4,SNF4 homolog of yeast sucros... 0.56 0.47
Bradi1g01000 1 694578
696333
1.8 3 f 1 PF00550 PTHR20863 KOG1748 AT3G05020.1 ACP,ACP1 acyl carrier protein 1 LOC... 0.71 0.91
Bradi1g01007 1 695876
702209
6.3 11 r 1 PF03731,PF02735,PF03730,PF08785 PTHR12604 KOG2326 K10885 AT1G48050.1 ATKU8... 0.12 0.11
Bradi1g01014 1 703492
705801
2.3 4 r 1 PF01217 PTHR11043 AT1G15370.1 SNARE-like superfamily protein LOC_Os03g6... 0.94 0.96
Bradi1g01021 1 706038
708663
2.6 1 r 1 PF01535 PTHR10483 AT5G46580.1 pentatricopeptide (PPR) repeat-containing... 0.2 0.06
Bradi1g01030 1 709517
709750
0.2 0 r 1 PTHR11821:SF29 AT1G75250.1 ATRL6,RL6,RSM3 RAD-like 6 LOC_Os03g63890.1 M... 0
Bradi1g01040 1 710464
714401
3.9 7 f 1 PF07724,PF07728,PF00004,PF10431 PTHR11638 AT1G74310.1 ATHSP101,HOT1,HSP1... 0
Bradi1g01047 1 716725
719957
3.2 2 r 1 AT5G42960.1 LOC_Os03g63860.1 DANA2, putative, expressed... 0.29 0.44
Bradi1g01060 1 723127
723493
0.4 0 r 1 LOC_Os03g63810.1 WRKY80, expressed... 0
Bradi1g01070 1 731493
733959
2.5 7 r 1 PTHR13261 KOG3034 AT2G44510.1 CDK inhibitor P21 binding protein LOC_Os03... 0
Bradi1g01080 1 744088
744829
0.7 0 f 1 PF06094 PTHR12510 KOG4450 AT3G02910.1 AIG2-like (avirulence induced gene... 0.93 0.94
Bradi1g01090 1 745282
749088
3.8 6 r 1 PF01412 PTHR23180 KOG0706 K12493 AT5G46750.1 AGD9 ARF-GAP domain 9 LOC_Os0... 0.98 0.99
Bradi1g01100 1 749903
752271
2.4 6 r 1 PF01138 PTHR11953 KOG1069 K12590 AT3G46210.1 Ribosomal protein S5 domain ... 0
Bradi1g01110 1 752513
756241
3.7 5 f 1 PF00076 PTHR10432 KOG0131 AT5G46840.1 RNA-binding (RRM/RBD/RNP motifs) f... 0.99 0.96
Bradi1g01120 1 756392
757112
0.7 0 r 1 PTHR11207 AT1G24450.1 NFD2 Ribonuclease III family protein LOC_Os03g6374... 0
Bradi1g01130 1 758757
763396
4.6 2 f 2 PF00447 PTHR10015 KOG0627 AT1G32330.1 ATHSFA1D,HSFA1D heat shock transcri... 0.51 0.2
Bradi1g01140 1 764088
767289
3.2 4 f 1 PF00753,PF10996,PF07521,PF11718 PTHR11203 KOG1137 3.1.27.- K14403 AT1G61010... 0.31 0.14
Bradi1g01150 1 767475
768810
1.3 0 r 1 PF00722,PF06955 AT1G32170.1 XTH30,XTR4 xyloglucan endotransglucosylase/... 0
Bradi1g01160 1 770537
771094
0.6 0 f 1 PF07893 LOC_Os05g03490.1 expressed protein... 0
Bradi1g01170 1 771227
777674
6.4 7 r 3 PF12174 AT1G32230.3 ATP8,CEO,CEO1,RCD1 WWE protein-protein interaction ... 0.76 0.9
Bradi1g01180 1 799120
801659
2.5 4 f 1 PF00004,PF07724,PF07728,PF10431 PTHR11638 AT1G74310.1 ATHSP101,HOT1,HSP1... 0
Bradi1g01190 1 803024
804595
1.6 0 f 1 PF04185 3.1.4.3 K01114 AT3G03530.1 NPC4 non-specific phospholipase C4 LOC... 0

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