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AtGDB v.4 Loci/Annotations  ?

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Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
(click to view)
Annotate it!
AT1G01010 1 3631
5899
2.3 5 f 1 Symbols: ANAC001, NAC001 NAC domain containing protein 1 chr1:3760-5630 ... 1 0.98
AT1G01020 1 5928
8737
2.8 9 r 2 Symbols: ARV1 Arv1-like protein chr1:6915-8666 REVERSE LENGTH=246; Type:... 1 0.97
AT1G01030 1 11649
13714
2.1 1 r 1 Symbols: NGA3 AP2/B3-like transcriptional factor family protein chr1:118... 1 1
AT1G01040 1 23146
31227
8.1 19 f 2 Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 dicer-like 1 ... 1 0.96
AT1G01046 1 28500
28706
0.2 0 f 1 ; Type: mirna; Curator_summary:Encodes a microRNA of unknown function. Micr... 1 0.35
AT1G01050 1 31170
33153
2 8 r 1 Symbols: AtPPa1, PPa1 pyrophosphorylase 1 chr1:31382-32670 REVERSE LENGT... 1 1
AT1G01060 1 33379
37871
4.5 9 r 5 Symbols: LHY, LHY1 Homeodomain-like superfamily protein chr1:33992-37061... 0.98 0.96
AT1G01070 1 38752
40944
2.2 5 r 2 Symbols: nodulin MtN21 /EamA-like transporter family protein chr1:38898... 1 0.98
AT1G01073 1 44677
44787
0.1 0 f 1 Symbols: unknown protein; FUNCTIONS IN: molecular_function unknown; INVO... 0
AT1G01080 1 45296
47019
1.7 3 r 2 Symbols: RNA-binding (RRM/RBD/RNP motifs) family protein chr1:45503-467... 0.86 0.86
AT1G01090 1 47485
49286
1.8 2 r 1 Symbols: PDH-E1 ALPHA pyruvate dehydrogenase E1 alpha chr1:47705-49166 R... 1 0.98
AT1G01100 1 50075
51199
1.1 4 r 4 Symbols: 60S acidic ribosomal protein family chr1:50284-50954 REVERSE L... 1 0.97
AT1G01110 1 52239
54692
2.5 4 f 2 Symbols: IQD18 IQ-domain 18 chr1:53022-54494 FORWARD LENGTH=365; Type: p... 0.89 0.86
AT1G01115 1 56624
56740
0.1 0 f 1 Symbols: unknown protein; FUNCTIONS IN: molecular_function unknown; INVO... 0
AT1G01120 1 57269
59167
1.9 0 r 1 Symbols: KCS1 3-ketoacyl-CoA synthase 1 chr1:57392-58978 REVERSE LENGTH=... 1 1
AT1G01130 1 61905
63811
1.9 2 r 1 Symbols: CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (Int... 0.68 0.2
AT1G01140 1 64166
67625
3.5 13 r 3 Symbols: CIPK9, SnRK3.12, PKS6 CBL-interacting protein kinase 9 chr1:643... 1 0.98
AT1G01150 1 70115
72138
2 3 r 1 Symbols: Homeodomain-like protein with RING/FYVE/PHD-type zinc finger do... 0.5 0.39
AT1G01160 1 72339
74096
1.8 5 f 2 Symbols: GIF2 GRF1-interacting factor 2 chr1:72583-73883 FORWARD LENGTH=... 1 0.88
AT1G01170 1 73931
74737
0.8 2 r 2 Symbols: Protein of unknown function (DUF1138) chr1:74105-74443 REVERSE... 1 0.97
AT1G01180 1 75583
76758
1.2 0 f 1 Symbols: S-adenosyl-L-methionine-dependent methyltransferases superfamil... 1 0.35
AT1G01183 1 78932
79032
0.1 0 r 1 ; Type: mirna; Curator_summary:Encodes a microRNA that targets several HD-Z... 0
AT1G01190 1 83045
84864
1.8 1 r 1 Symbols: CYP78A8 cytochrome P450, family 78, subfamily A, polypeptide 8 ... 0.37 0.11
AT1G01200 1 86515
88213
1.7 1 r 1 Symbols: ATRABA3, ATRAB-A3, RABA3 RAB GTPase homolog A3 chr1:86715-88145... 1 0.97
AT1G01210 1 88898
89745
0.8 2 f 1 Symbols: DNA-directed RNA polymerase, subunit M, archaeal chr1:88977-89... 1 0.97
AT1G01220 1 91376
95651
4.3 7 f 1 Symbols: FKGP, AtFKGP L-fucokinase/GDP-L-fucose pyrophosphorylase chr1:9... 0.77 0.76
AT1G01225 1 95987
97407
1.4 1 f 1 Symbols: NC domain-containing protein-related chr1:96064-97242 FORWARD ... 1 0.97
AT1G01230 1 97456
99240
1.8 2 f 1 Symbols: ORMDL family protein chr1:97620-99046 FORWARD LENGTH=158; Type... 1 0.99
AT1G01240 1 99894
101834
1.9 1 f 3 Symbols: unknown protein; INVOLVED IN: N-terminal protein myristoylation... 1 0.99
AT1G01250 1 104491
105330
0.8 0 r 1 Symbols: Integrase-type DNA-binding superfamily protein chr1:104731-105... 1 0.95
AT1G01260 1 108946
111609
2.7 1 f 3 Symbols: basic helix-loop-helix (bHLH) DNA-binding superfamily protein ... 0.99 0.78
AT1G01270 1 111890
111961
0.1 0 r 1 ; Type: pre_trna; Computational_description:tRNA-Gln (anticodon: CTG)... 1 0.32
AT1G01280 1 112263
113947
1.7 1 f 1 Symbols: CYP703A2, CYP703 cytochrome P450, family 703, subfamily A, polyp... 1 0.93
AT1G01290 1 114286
116108
1.8 2 f 2 Symbols: CNX3 cofactor of nitrate reductase and xanthine dehydrogenase 3 ... 1 0.95
AT1G01300 1 116943
118764
1.8 0 f 1 Symbols: Eukaryotic aspartyl protease family protein chr1:117065-118522... 1 0.98
AT1G01305 1 119397
119997
0.6 0 f 1 Symbols: unknown protein; FUNCTIONS IN: molecular_function unknown; INVO... 1 0.96
AT1G01310 1 120154
121130
1 0 f 1 Symbols: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogene... 1 0.97
AT1G01320 1 121067
130577
9.5 24 r 2 Symbols: Tetratricopeptide repeat (TPR)-like superfamily protein chr1:1... 0.67 0.56
AT1G01340 1 132328
135831
3.5 8 r 2 Symbols: ATCNGC10, CNGC10, ACBK1 cyclic nucleotide gated channel 10 chr1... 0.97 0.91
AT1G01350 1 136124
138162
2 3 f 1 Symbols: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein ... 1 0.99
AT1G01355 1 138513
139568
1.1 4 f 1 Symbols: Putative endonuclease or glycosyl hydrolase chr1:138513-139568... 0
AT1G01360 1 141971
143183
1.2 2 f 1 Symbols: RCAR1, PYL9 regulatory component of ABA receptor 1 chr1:142138-... 1 0.99
AT1G01370 1 143564
145684
2.1 9 f 2 Symbols: HTR12, CENH3 Histone superfamily protein chr1:143773-145400 FOR... 1 0.97
AT1G01380 1 147153
147942
0.8 2 f 1 Symbols: ETC1 Homeodomain-like superfamily protein chr1:147267-147740 FO... 0.99 0.98
AT1G01390 1 148120
149806
1.7 0 r 1 Symbols: UDP-Glycosyltransferase superfamily protein chr1:148319-149761... 1 0.96
AT1G01400 1 150689
152210
1.5 3 r 1 Symbols: unknown protein; Has 21 Blast hits to 21 proteins in 8 species:... 1 0.97
AT1G01410 1 153113
154198
1.1 0 f 1 Symbols: APUM22, PUM22 pumilio 22 chr1:153113-154198 FORWARD LENGTH=362;... 0
AT1G01420 1 154492
156011
1.5 0 r 1 Symbols: UGT72B3 UDP-glucosyl transferase 72B3 chr1:154566-156011 REVERS... 1 0.94
AT1G01430 1 156801
158655
1.9 2 r 1 Symbols: TBL25 TRICHOME BIREFRINGENCE-LIKE 25 chr1:156953-158536 REVERSE... 1 0.98
AT1G01440 1 159856
162572
2.7 4 r 1 Symbols: Protein of unknown function (DUF3133) chr1:159935-162219 REVER... 1 0.95
AT1G01448 1 163419
166239
2.8 4 f 3 ; Type: other_rna; Curator_summary:Potential natural antisense gene, locus ... 1 0.85
AT1G01450 1 164105
165517
1.4 0 r 1 Symbols: Protein kinase superfamily protein chr1:164105-165517 REVERSE ... 0.88 0.86
AT1G01453 1 166589
167842
1.3 1 r 2 Symbols: unknown protein; FUNCTIONS IN: molecular_function unknown; INVO... 1 0.96
AT1G01460 1 168723
171165
2.4 9 f 1 Symbols: ATPIPK11, PIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core... 1 0.95
AT1G01470 1 172146
172948
0.8 1 r 1 Symbols: LEA14, LSR3 Late embryogenesis abundant protein chr1:172295-172... 0.99 0.98
AT1G01471 1 173251
173466
0.2 0 f 1 Symbols: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 ... 0
AT1G01480 1 175782
178400
2.6 3 f 2 Symbols: ACS2, AT-ACC2 1-amino-cyclopropane-1-carboxylate synthase 2 chr... 1 0.99
AT1G01490 1 180059
182358
2.3 3 r 2 Symbols: Heavy metal transport/detoxification superfamily protein chr1... 1 0.99
AT1G01500 1 185133
186923
1.8 1 f 1 Symbols: Erythronate-4-phosphate dehydrogenase family protein chr1:1852... 1 0.98
AT1G01510 1 187211
190056
2.8 6 f 1 Symbols: AN NAD(P)-binding Rossmann-fold superfamily protein chr1:187235... 1 0.96
AT1G01520 1 190596
192139
1.5 7 f 1 Symbols: Homeodomain-like superfamily protein chr1:190596-192139 FORWAR... 1 0.9
AT1G01530 1 192640
193670
1 1 r 1 Symbols: AGL28 AGAMOUS-like 28 chr1:192640-193662 REVERSE LENGTH=248; Ty... 1 0.9
AT1G01540 1 195780
198684
2.9 6 f 2 Symbols: Protein kinase superfamily protein chr1:195980-197973 FORWARD ... 1 1
AT1G01550 1 199639
201775
2.1 2 f 2 Symbols: BPS1 Protein of unknown function (DUF793) chr1:200526-201575 FO... 1 1
AT1G01560 1 202136
204335
2.2 5 f 2 Symbols: ATMPK11, MPK11 MAP kinase 11 chr1:202345-203662 FORWARD LENGTH=... 1 0.85
AT1G01570 1 205176
207435
2.3 2 f 1 Symbols: Protein of unknown function (DUF604) chr1:205176-207435 FORWAR... 0.3 0.39
AT1G01580 1 209395
213041
3.6 7 f 1 Symbols: FRO2, FRD1, ATFRO2 ferric reduction oxidase 2 chr1:209395-21281... 1 0.95
AT1G01590 1 214229
217304
3.1 7 f 1 Symbols: FRO1, ATFRO1 ferric reduction oxidase 1 chr1:214229-217304 FORW... 0
AT1G01600 1 218994
221286
2.3 1 f 1 Symbols: CYP86A4 cytochrome P450, family 86, subfamily A, polypeptide 4 ... 1 1
AT1G01610 1 221691
224340
2.6 3 r 1 Symbols: ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 chr1:2219... 1 0.97
AT1G01620 1 225665
227302
1.6 4 r 2 Symbols: PIP1C, TMP-B, PIP1;3 plasma membrane intrinsic protein 1C chr1:... 1 0.92
AT1G01630 1 229013
230917
1.9 4 f 1 Symbols: Sec14p-like phosphatidylinositol transfer family protein chr1:... 1 1
AT1G01640 1 230994
232508
1.5 2 r 2 Symbols: BTB/POZ domain-containing protein chr1:231164-231915 REVERSE L... 1 0.98
AT1G01650 1 232841
237817
5 13 r 2 Symbols: SPPL4, ATSPPL4 SIGNAL PEPTIDE PEPTIDASE-LIKE 4 chr1:233188-2376... 1 1
AT1G01660 1 240057
242608
2.6 9 r 1 Symbols: RING/U-box superfamily protein chr1:240057-242608 REVERSE LENG... 0
AT1G01670 1 242843
245988
3.1 7 r 1 Symbols: RING/U-box superfamily protein chr1:242943-245163 REVERSE LENG... 1 1
AT1G01680 1 246411
248367
2 6 r 1 Symbols: ATPUB54, PUB54 plant U-box 54 chr1:246411-248329 REVERSE LENGTH... 0.85 0.87
AT1G01690 1 249141
252462
3.3 13 f 1 Symbols: ATPRD3, PRD3 putative recombination initiation defects 3 chr1:2... 1 0.98
AT1G01695 1 252947
254495
1.5 3 f 1 Symbols: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-r... 0
AT1G01700 1 259495
261474
2 6 r 1 Symbols: ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 chr1... 0
AT1G01710 1 262828
267771
4.9 18 f 1 Symbols: Acyl-CoA thioesterase family protein chr1:262950-266029 FORWAR... 1 0.98
AT1G01720 1 268330
269819
1.5 2 f 1 Symbols: ATAF1, ANAC002 NAC (No Apical Meristem) domain transcriptional r... 1 0.99
AT1G01725 1 269792
270775
1 1 r 1 Symbols: unknown protein; FUNCTIONS IN: molecular_function unknown; INVO... 1 0.96
AT1G01730 1 270956
272061
1.1 2 f 1 Symbols: unknown protein; FUNCTIONS IN: molecular_function unknown; INVO... 1 0.96
AT1G01740 1 272111
274569
2.5 9 r 2 Symbols: Protein kinase protein with tetratricopeptide repeat domain ch... 0.05 0.06
AT1G01750 1 275366
276310
0.9 2 f 1 Symbols: ADF11 actin depolymerizing factor 11 chr1:275528-276126 FORWARD... 1 0.99
AT1G01760 1 276266
278448
2.2 9 r 1 Symbols: adenosine deaminases;RNA binding;RNA binding;adenosine deaminas... 1 0.93
AT1G01770 1 278615
282891
4.3 15 f 1 Symbols: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown... 1 0.99
AT1G01780 1 282761
284245
1.5 4 f 1 Symbols: GATA type zinc finger transcription factor family protein chr1... 1 0.99
AT1G01790 1 284610
291094
6.5 20 f 1 Symbols: KEA1, ATKEA1 K+ efflux antiporter 1 chr1:284781-290869 FORWARD ... 0.67 0.84
AT1G01800 1 293342
295040
1.7 4 f 2 Symbols: NAD(P)-binding Rossmann-fold superfamily protein chr1:293396-2... 1 0.9
AT1G01810 1 295221
295859
0.6 0 f 1 Symbols: unknown protein; Has 12 Blast hits to 12 proteins in 5 species:... 1 0.96
AT1G01820 1 296001
298120
2.1 7 r 1 Symbols: PEX11C peroxin 11c chr1:296213-297723 REVERSE LENGTH=236; Type:... 1 0.98
AT1G01830 1 298535
302315
3.8 4 r 3 Symbols: ARM repeat superfamily protein chr1:298717-300441 REVERSE LENG... 1 1
AT1G01840 1 303537
304358
0.8 0 f 1 Symbols: unknown protein; Has 23 Blast hits to 23 proteins in 9 species:... 1 0.98
AT1G01860 1 304133
306287
2.2 8 r 1 Symbols: PFC1 Ribosomal RNA adenine dimethylase family protein chr1:3044... 1 0.95
AT1G01870 1 306384
306456
0.1 0 f 1 ; Type: pre_trna; Computational_description:tRNA-Val (anticodon: TAC)... 0
AT1G01880 1 306480
309109
2.6 6 r 2 Symbols: 5-3 exonuclease family protein chr1:306558-308991 REVERSE LENG... 0.11 0.09
AT1G01890 1 309275
309347
0.1 0 r 1 ; Type: pre_trna; Computational_description:tRNA-Lys (anticodon: CTT)... 0
AT1G01900 1 310316
313130
2.8 1 f 1 Symbols: ATSBT1.1, SBTI1.1 subtilase family protein chr1:310332-313011 F... 1 0.95

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