Database

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

Vitis vinifera (Vv)

1. Small nuclear Ribonucleoprotein (snRNP)

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
1.1	108	GSVIVT00028009001	SmD2		vvSmD2-1	7	r	3569359	3573218		Sm 1
1.1	108	GSVIVT00030614001	SmD2		vvSmD2-2	1	r	5854306	5855233		Sm 1
1.1	147	GSVIVT00033465001	SmD1	SmD1	vvSmD1-a	19	f	9515547	9523613		Sm 1
1.1	181	GSVIVT00017697001	SmE	SmE	vvSmE-a	17	r	3453400	3456134		Sm 1
1.1	221	GSVIVT00022717001	LSM4	LSm4	vvLSM4	14	f	1791461	1803715		Sm 1
1.1	336	GSVIVT00002642001	SmB	SmB1	vvSmB-a	0	r	18778635	18779465		Sm 1
1.1	344	GSVIVT00002878001	SmD3	SmD3	vvSmD3-b	18	r	924458	927625		Sm 1
1.1	469	GSVIVT00021594001	SmG	SmG	vvSmG-a	8	f	16090857	16094340		Sm 1
1.1	472	GSVIVT00008837001	LSM7	LSm7	vvLSM7	13	r	14861461	14866692		Sm 1
1.1	479	GSVIVT00023663001	LSM2	LSm2	vvLSM2	7	r	2140485	2145527		Sm 1
1.1	539	GSVIVT00020489001	LSM5	LSm5	vvLSM5/SAD1	5	f	12220104	12234950		Sm 1
1.1	545	GSVIVT00034053001	LSM1	LSm1	vvLSM1b	9	r	672941	678930		Sm 1
1.1	550	GSVIVT00013856001	LSM8	LSm8	vvLSM8	16	r	111326	118046		Sm 1
1.1	561	GSVIVT00031776001	LSM3	LSm3	vvLSM3a	0	f	2065552	2083579		Sm 1
1.2	92	GSVIVT00025042001	Luc7		vvLuc7	4	r	12034976	12045039		DUF259 1
1.2	208	GSVIVT00028510001	Prp39		vvPrp39a	7	f	7797619	7816149		HAT 7; TPR-like 1
1.2	403	GSVIVT00024956001	U1-70K	Snp1	vvU1-70K	4	f	12949347	12959171		RRM 1
1.2	475	GSVIVT00014992001	FBP11	Prp40	vvPrp40a	18	f	7016256	7052875		WW 2; FF 5
1.2	538	GSVIVT00029930001	Related_to_Luc7-like	Luc7	vvLuc7-rl	0	r	115024336	115033537		DUF259 1
1.2	981	GSVIVT00028024001	U1A_Subunit	Mud1	vvU1A	7	r	3675740	3680305		RRM 2
1.2	1097	GSVIVT00003390001	Prp39		vvPrp39b	0	r	23119159	23178082		HAT 4
1.3	170	GSVIVT00030195001	SF3a120/SAP114_Subun	Prp21p	vvSAP114-1a	1	f	1688270	1692807		SWAP/Surp 2
1.3	203	GSVIVT00023361001	SF3b160/SAP155_Subun	Hsh155	vvSAP155	8	r	10112712	10114280		HEAT 1; ARM 2; SAP
1.3	222	GSVIVT00010279001	SF3b150/SAP145_Subun	Cus1p	vvSF3b150	0	f	63363263	63374347		PSP 1; DUF382 1
1.3	228	GSVIVT00038875001	SF3b_14b/PHP5A	Rds3p	vvSF3b_14b/PHP5A-a	8	r	6548272	6552566		UPF0123 1
1.3	256	GSVIVT00029524001	SF3b120/SAP130_Subun	Rse1p	vvSAP130a	13	r	2230071	2236177		CPSF_A 1; WD40-like
1.3	347	GSVIVT00023992001	U2B''_Subunit	Msl1p	vvU2B''	6	r	8238144	8241871		RRM 2
1.3	412	GSVIVT00006250001	U2A'_Subunit	Lea1p	vvU2A	1	r	15542014	15565275		LRR 4
1.3	460	GSVIVT00017245001	p14	Snu17p	vvP14-1	6	r	14867435	14868174		RRM 1
1.3	461	GSVIVT00037110001	p14	Snu17p	vvSAP61	16	f	6829341	6845986		C2H2 1
1.3	466	GSVIVT00020286001	SF3b_10		vvSF3b10a	5	f	8223911	8231427		SF3b10 1
1.3	470	GSVIVT00024968001	SF3b53/SAP49_Subunit	Hsh49p	vvSAP49a	4	f	12845211	12854343		RRM 2
1.3	758	GSVIVT00000599001	SF3a66/SAP62_Subunit	Prp11p	vvSAP62	8	r	17672382	17702898		C2H2 1
1.4	44	GSVIVT00025738001	116kD_Subunit/elonga	Snu114p	vvU5-116-2a	19	f	12380783	12383945		EFG_C 1; GTP_EFTU
1.4	44	GSVIVT00025739001	116kD_Subunit/elonga	Snu114p	vvU5-116-2b	19	f	12383951	12385797		EFG_C 1; GTP_EFTU
1.4	75	GSVIVT00001949001	200kD_Subunit/Helica	Brr2p	vvU5-200-1	5	r	20612536	20621590		DEAD 1; Helicase_C
1.4	75	GSVIVT00016213001	200kD_Subunit/Helica	Brr2p	vvU5-200-2	17	r	8147284	8204084		DEAD 1; Helicase_C
1.4	182	GSVIVT00000309001	220kD_Subunit	Prp8p	vvU5-220/Prp8a-1	9	r	6970305	6978234		Mov34 1
1.4	182	GSVIVT00000310001	220kD_Subunit	Prp8p	vvU5-220/Prp8a-2	9	r	6964763	6970242		Mov34 1
1.4	259	GSVIVT00029727001	100kD_Subunit	Prp28p	vvU5-100KD-1	9	r	16498201	16499469		DEAD 1; Helicase_C
1.4	259	GSVIVT00035915001	100kD_Subunit	Prp28p	vvU5-100KD-2	3	f	1705	2973		DEAD 1; Helicase_C
1.4	402	GSVIVT00025837001	102KD/Prp6-like	Prp6p	vvU5-102KD	12	r	7672683	7675754		Ubiquitin 1; TPR 3
1.4	405	GSVIVT00005997001	116kD_Subunit/elonga	Snu114p	vvU5-116-3	4	f	19058063	19061155		EFG_C 1; GTP_EFTU
1.4	413	GSVIVT00005644001	116kD_Subunit/elonga	Snu114p	vvU5-116-1a	0	f	33906189	33915146		EFG_C 1; GTP_EFTU 1
1.4	637	GSVIVT00020074001	15kD_Subunit	Dib1p	vvU5-15	5	f	5803643	5810400		DIMI 1; Thioredoxin
1.4	755	GSVIVT00034694001	40kD_Subunit		vvU5-40	5	r	22570275	22579656		WD-40 7
1.4	1099	GSVIVT00020695001	200kD_Subunit/Helica	Brr2p	vvU5-200-3	14	f	16556306	16567956		DEAD 1; Sec63 1; Ru
1.5	223	GSVIVT00016877001	U4/U6-15.5K	Snu13p	vvTri15.5-1a-1	11	f	4378235	4380877		Ribosomal_L7Ae 1
1.5	223	GSVIVT00018373001	U4/U6-15.5K	Snu13p	vvTri15.5-1a-2	13	f	4019581	4022697		Ribosomal_L7Ae 1
1.5	260	GSVIVT00028845001	U4/U6-61KD	Prp31	vvU5-61/Prp31a	1	r	7709644	7718425		Nop 1
1.5	411	GSVIVT00029506001	U4/U6-90K/SAP90	Prp3p	vvSAP90-1	13	r	2070408	2075669
1.5	756	GSVIVT00025331001	U4/U6-60K/SAP60	Prp4p	vvSAP60	8	r	18833922	18837549		WD-40 7;SFM 1;WD40
1.6	399	GSVIVT00007133001	Tri-110KD	SAD1	vvTri110	0	f	45264113	45283528		SART-1 1
1.6	633	GSVIVT00031353001	(U4/U6.U5)	Tri-27kD/RY1	vvTri-27kD/RY1	11	f	12522357	12522965
1.6	638	GSVIVT00010886001	Tri-65_KD	Snu66p	vvTri65a	0	f	67861535	67867373		UCH 1; ZnF_UBP 1
1.6	753	GSVIVT00022628001	hSnu23/FLJ31121	Snu23p	vvSnu23	3	r	45319110	45324034		ZnF_U1 1
1.7	225	GSVIVT00015525001	U11/U12-25K	(-99_protein)	vvU11/U12-25K	18	r	1429867	1432730		C2H2 1
1.7	346	GSVIVT00001950001	U11/U12-65K		vvU11/U12-65K-1	5	r	20627307	20632596		RRM 2;PHOSPHOPANTET
1.7	346	GSVIVT00038819001	U11/U12-65K		vvU11/U12-65K-2	5	r	16347489	16352780		RRM 2;PHOSPHOPANTET
1.7	346	GSVIVT00038820001	U11/U12-65K		vvU11/U12-65K-3	5	r	16353161	16359478		RRM 2;PHOSPHOPANTET
1.7	982	GSVIVT00001916001	U11/U12-35K		vvU11/U12-35kD	5	r	20112097	20123565		RRM 1
1.7	1101	GSVIVT00018105001	U11/U12-31K	(MADP1)	vvU11/U12-31K	13	f	7181149	7192947		RRM 1; CCHC 1

2. Splicing factors

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
2.1	49	GSVIVT00002951001	U2AF35		vvU2AF35/AUS-1	18	f	392800	393618		RRM 1; CCHC 2;
2.1	49	GSVIVT00021681001	U2AF35		vvU2AF35/AUS-2	8	r	16913422	16918438		RRM 1; CCHC 2;
2.1	55	GSVIVT00024970001	U2AF65		vvU2AF65a/AULb	4	r	12833888	12841413		RRM 3;
2.1	72	GSVIVT00006509001	PTB/hnRNP_I		vvPTB2	0	r	39478741	39486699		RRM 2
2.1	169	GSVIVT00019344001	PTB/hnRNP_I		vvPTB1-1	7	r	13294189	13305707		RRM 4
2.1	169	GSVIVT00031740001	PTB/hnRNP_I		vvPTB1-2	0	r	1603672	1613696		RRM 4
2.1	398	GSVIVT00009203001	SF1/BBP		vvSF1/BBP-1	0	f	56852098	56854353		RRM 1; CCHC 2; KH
2.1	398	GSVIVT00027806001	SF1/BBP		vvSF1/BBP-2	19	f	1504905	1509427		RRM 1; CCHC 2; KH
2.1	409	GSVIVT00020315001	U2AF65		vvAUL2	5	r	8675417	8709217		RRM 1
2.1	481	GSVIVT00022233001	CBP80	Cbc2p	vvCBP80	6	r	21302566	21360841		MIF4G 1; ARM 3
2.1	553	GSVIVT00035343001	U2AF35_related_prote		vvUrp	0	f	131784055	131792277		RRM 1; CCCH 2
2.1	635	GSVIVT00018636001	CBP20	Cbc1	vvCBP20	12	r	3897933	3901943		RRM 1
2.2	25	GSVIVT00027992001	SF2/ASF		vvSRp30	7	f	3460878	3466802		RRM 2
2.2	31	GSVIVT00028848001	9G8		vvRSZp21	1	r	7749604	7759038		RRM 1; CCHC 1
2.2	61	GSVIVT00000274001	SC35		vvSC35-1	0	r	1556262	1563374		RRM 1;
2.2	61	GSVIVT00015240001	SC35		vvSC35-2	18	r	4295113	4298624		RRM 1;
2.2	151	GSVIVT00024777001	TASR-2		vvSCL30a	6	f	826175	830807		RRM 1
2.2	204	GSVIVT00026247001	Plant_Novel_SR_prote		vvRSp41	15	f	6579265	6584192		RRM 2
2.2	226	GSVIVT00008658001	Plant_Novel_SR_prote		vvRSp31	0	r	51380337	51383774		RRM 2
2.2	292	GSVIVT00018502001	TASR-2		vvSCL30	13	r	2847091	2849288		RRM 1
2.2	752	GSVIVT00037180001	SF2/ASF		vvSRp34b	16	r	7415518	7418045		RRM 2
2.3	13	GSVIVT00028144001	hPrp43	Prp43p	vvPrp43	7	f	4613110	4619593		DEAD 1; Helicase_C
2.3	255	GSVIVT00032794001	SR140		vvSR140-1	4	f	6799935	6829013		Surp 1;RRM 1;RPR 1
2.3	549	GSVIVT00035349001	SPF30		vvSPF30	0	r	131869800	131885592		Tudor 1
2.3	647	GSVIVT00028417001	SPF45		vvSPF45	10	f	5144765	5157207		DIII/G-patch domain
2.4	1	GSVIVT00006687001	HSP73/HSPA8		VvHSP73-1	2	f	1736788	1740841		Hsp70 1;
2.4	1	GSVIVT00017185001	HSP73/HSPA8		VvHSP73-2	11	r	6372939	6374648		Hsp70 1;
2.4	1	GSVIVT00018481001	HSP73/HSPA8		VvHSP73-3	13	f	3107374	3110358		Hsp70 1;
2.4	1	GSVIVT00018506001	HSP73/HSPA8		VvHSP73-4	13	f	2808721	2812066		Hsp70 1;
2.4	1	GSVIVT00021301001	HSP73/HSPA8		VvHSP73-5	8	f	13489270	13492107		Hsp70 1;
2.4	1	GSVIVT00022731001	HSP73/HSPA8		VvHSP73-6	14	f	1913894	1916907		Hsp70 1;
2.4	1	GSVIVT00024351001	HSP73/HSPA8		VvHSP73-7	6	r	5433998	5437390		Hsp70 1;
2.4	1	GSVIVT00024357001	HSP73/HSPA8		VvHSP73-8	6	f	5381938	5384525		Hsp70 1;
2.4	1	GSVIVT00037232001	HSP73/HSPA8		VvHSP73-9	16	r	7855377	7858557		Hsp70 1;
2.4	134	GSVIVT00019780001	G10	Cwc14p	vvG10	5	r	3099664	3102810		G10 1;
2.4	167	GSVIVT00002461001	hSyf3/CRN	Clf1/Syf3p	vvCRN1a	2	f	911271	918795		TPR 1; HAT 14; TPR
2.4	168	GSVIVT00014412001	hSyf3/CRN	Clf1/Syf3p	vvCypE1a	18	f	12235088	12235868		Pro_isomerase 1
2.4	288	GSVIVT00009727001	hSyf1	Syf1p	vvSyf1	0	r	63927793	63940684		TPR 1;HAT 10;TPRli
2.4	297	GSVIVT00024168001	hECM2	Ecm2p	vvECM2-1a	6	f	6756746	6768048		RRM 1; CCCH 1
2.4	407	GSVIVT00017780001	SPF27/BCAS2		vvSPF27	17	f	2597361	2606051		BCAS2 1
2.4	414	GSVIVT00020342001	hPrp19	Prp19p	vvPrp19a	5	f	9151546	9167227		WD-40 7; Ubox 1
2.4	467	GSVIVT00010038001	PRL1	Prp46p	vvPRL1	0	r	146417591	146424456		WD-40 2;WD40like 1
2.4	471	GSVIVT00036134001	GCIP_p29	Syf2	vvGCIPp29	3	r	1750363	1753861
2.4	545	GSVIVT00033426001	AD-002	Cwc15p	vvAD-002	19	r	9061359	9067259		Cwf_Cwc_15 1
2.4	559	GSVIVT00002219001	CDC5	Cef1	vvCDC5	0	f	1017683	1041819		SANT 2
2.4	640	GSVIVT00002674001	beta_catenin-like_1		vvCTNNNBL1-1	0	f	19444621	19461025		Armadillo 1; ARM 1
2.4	640	GSVIVT00023517001	beta_catenin-like_1		vvCTNNNBL1-2	0	r	110880130	110955765		Armadillo 1; ARM 1
2.4	642	GSVIVT00005499001	KIAA0560		vvAquarius-1	13	r	12113468	12138830
2.4	642	GSVIVT00033709001	KIAA0560		vvAquarius-2	8	r	1641961	1676274
2.4	645	GSVIVT00016680001	SKIP	Prp45p	vvSKIP	11	r	2631395	2633203		SKIP/SNW 1
2.4	866	GSVIVT00013867001	MGC23918		vvMGC23918	16	f	184808	191303
2.4	983	GSVIVT00021565001	PPIase-like_1		vvPPIase-like1	8	r	15894687	15899059		Pro_isomerase 1
2.5	122	GSVIVT00030321001	hPrp4	kinase	vvPRP4K-1	1	r	3014263	3029904		Pkinase 1;TyrKc 1;
2.5	220	GSVIVT00019608001	TBL1-rp_1		vvTBL1-rp1	7	r	11032914	11044816		WD-40 5; Peptidease
2.5	464	GSVIVT00018224001	N-CoR1		vvN-CoR1	13	r	5375683	5392930		SANT 2;Homeodomain_
2.5	543	GSVIVT00028583001	Smc-1		vvSmc1	7	r	6698307	6755226		ATP_GTP_A_BS 1;SMC_
2.5	868	GSVIVT00023325001	NPW38		vvNPW38	8	f	10424205	10437401		WW 2
2.6	65	GSVIVT00024369001	ALY		vvALY-1	6	f	5279368	5286431		RRM 1;
2.6	80	GSVIVT00000354001	UAP56		vvUAP56-1	9	r	6578585	6597850		DEAD 1; Helicase_C
2.6	80	GSVIVT00032637001	UAP56		vvUAP56-2	4	r	4800611	4804563		DEAD 1; Helicase_C
2.6	227	GSVIVT00022454001	ALY		vvALY-2a	0	r	4811894	4844421		RRM 1
2.6	342	GSVIVT00024267001	Srm160-like		vvSRM102	6	f	6089426	6094817		PWI 1
2.6	345	GSVIVT00025760001	RNPS1		zmSR45/zmRNPS1-3	19	r	12713134	12729473		RRM 1
2.6	348	GSVIVT00014203001	Magoh		vvMagoh	16	r	4618188	4624630		Mago_nashi 1
2.6	417	GSVIVT00037338001	Nuk-34/eIF4A3/DDX48		vvDDX48/eIF4A3-1	0	f	136705528	136712016		DEAD 1; Helicase_C
2.6	480	GSVIVT00034829001	Y14		vvY14	4	f	17831482	17837543		RRM 1; RBMB 4
2.7	13	GSVIVT00033641001	Prp22	Prp22	vvPrp22	8	r	701158	704237		DEAD 1; Helicase_C
2.7	415	GSVIVT00023725001	Prp18	Prp18	vvPrp18-1	7	r	1533793	1539485		Prp18 1; SFM 1
2.7	416	GSVIVT00028826001	Prp18	Prp18	vvPrp17-1	1	f	7514868	7520014		WD-40 7;
2.7	551	GSVIVT00020268001	Slu7	Slu7p	vvSLU7-1a	5	f	7937835	7952676
2.7	747	GSVIVT00027473001	Prp17	Prp17p	vvPrp17	19	f	4937519	4947787		WD-40 6
2.7	1102	GSVIVT00035061001	Prp22	Prp22	vvPrp22-3	0	f	3035068	3051909		DEAD 1;Helicase_C
2.7	1103	GSVIVT00030750001	Prp22	Prp22	vvPrp22-2	1	f	7297204	7311251		DEAD 1;Helicase_C
2.8	13	GSVIVT00016254001	Prp2		vvPrp2-1a	17	f	7754539	7761763		DEAD 1; Helicase_C
2.8	13	GSVIVT00035046001	Prp2		vvPrp2-1a	0	r	2873421	2906709		DEAD 1; Helicase_C
2.8	293	GSVIVT00023519001	SRm300		vvSRM300like	0	r	111043312	111063669		RRM 1; Filamin/ABP28
2.8	296	GSVIVT00036305001	Prp5		vvPrp5-1a	3	f	2970908	2974482		DEAD 1; Helicase_C
2.8	478	GSVIVT00002571001	hTra-2/SFRS10		vvTra/SFRS1-1	2	r	57234	60678		RRM 1
2.8	478	GSVIVT00024167001	hTra-2/SFRS10		vvTra/SFRS1-2	6	f	6768115	6770166		RRM 1
2.8	754	GSVIVT00028128001	Prp5		vvPrp5	7	f	4454730	4460498		DEAD 1;Helicase_C
2.8	979	GSVIVT00015037001	hDbr1	dbr1	vvDbr1	18	f	6573333	6585818		Metallophos 1;DBRI

3. Splicing regulation

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
3.1	71	GSVIVT00023119001	Lammer/CLK	kinase	vvAFC1/vvAFC2	8	f	12546044	12552018		Pkinase 1; TyrKc 1
3.1	71	GSVIVT00030742001	Lammer/CLK	kinase	vvAFC1/vvAFC2	1	f	7209484	7213527		Pkinase 1; TyrKc 1
3.1	135	GSVIVT00021715001	Kinase	SRPK2	vvSRPK2a-1	8	f	17135923	17142798		Pkinase 1; TyrKc 1
3.1	135	GSVIVT00022115001	Kinase	SRPK2	vvSRPK2a-2	6	f	22908174	22923130		Pkinase 1; TyrKc 1
3.1	209	GSVIVT00019335001	Kinase	SRPK1	vvSRPK1a	7	r	13410700	13415743		Pkinase 1; TyrKc 1
3.1	290	GSVIVT00032520001	Kinase	Lammer/CLK_kinase	vvAFC3	4	f	3573814	3576809		Pkinase 1;TyrKc 1;S
3.2	45	GSVIVT00016201001	Glycine-Rich_RBD		vvGRBP1d/GRBP1c/GRBP1e	17	r	8299678	8312252		RRM 1
3.2	109	GSVIVT00036381001	Glycine-Rich_RBD		vvGRP7/vvGRBP3a	3	r	3596606	3597656		RRM 1
3.3	29	GSVIVT00027210001	hnRNP_A/B		VvRNPA/B-1	19	r	7662788	7667537		RRM 2
3.3	29	GSVIVT00029149001	hnRNP_A/B		VvRNPA/B-2	12	f	9607377	9613779		RRM 2
3.3	149	GSVIVT00017427001	hnRNP_A/B		vvUBA2a	6	r	12059820	12063775		RRM 2
3.3	257	GSVIVT00027793001	hnRNP_A/B		vvUBA2c	19	f	1661889	1667094		RRM 2
3.3	418	GSVIVT00020328001	hnRNP_A/B		vvRNPA/B_1a	5	r	8971539	8975070		RRM 2
3.3	418	GSVIVT00028534001	hnRNP_A/B		vvRNPA/B_1b	7	r	7449662	7455467		RRM 2
3.3	648	GSVIVT00034188001	hnRNP_A/B		vvRNPA/B_8b	9	r	2119909	2123023		RRM 2
3.3	655	GSVIVT00029068001	hnRNP_A/B		vvRNP_N1-1	12	f	8652579	8655133		RRM 2;HUDSXLRNA 2
3.3	655	GSVIVT00033419001	hnRNP_A/B		vvRNP_N1-2	19	r	9015598	9018716		RRM 2;HUDSXLRNA 2
3.3	655	GSVIVT00038668001	hnRNP_A/B		vvRNP_N1-3	0	r	3779614	3784326		RRM 2;HUDSXLRNA 2
3.3	1098	GSVIVT00020662001	hnRNP_A/B		vvRNPA/B_8a	14	r	16182060	16186734		RRM 2; Eggshell 4
3.4	93	GSVIVT00019044001	hnRNP_R/Q		hnRNP-R3/vvPA/B	15	r	1752720	1756796		RRM 3
3.4	93	GSVIVT00036809001	hnRNP_R/Q		hnRNP-R3/vvPA/B	4	r	14575263	14580113		RRM 3
3.4	120	GSVIVT00037346001	hnRNP_R/Q		vv-hnRNP-R2	0	f	136815241	136831763		RRM 3
3.4	179	GSVIVT00026153001	hnRNP_R/Q		vv-hnRNP-R1	15	f	7425204	7429984		RRM 3
3.4	183	GSVIVT00023607001	CUG-BP		vvCUG-BP1	7	r	2576771	2583271		RRM 3; HUDSXLRNA 4
3.4	337	GSVIVT00033168001	_		vvFCA1	5	r	1383367	1396862		RRM 2; WW 1
3.4	350	GSVIVT00002259001	hnRNP_G		vv-hnRNP-G2	0	f	19756123	19758198		RRM 1; CCHC 1
3.4	555	GSVIVT00021239001	hnRNP_P2		vv-hnRNP-P	1	r	13196177	13205528		RRM 1; ZnF_RBZ 2
3.4	639	GSVIVT00002157001	hnRNP_E1/E2		vv-hnRNP-E	0	r	14036157	14050706		KH 3
3.4	746	GSVIVT00008733001	hnRNP_F/hnRNP_H		vv-hnRNP-F/AtRNPH/F_	4	f	16047918	16049742		RRM 2
3.4	867	GSVIVT00028139001	_		vvFCA2	7	r	4563366	4578887		RRM 2; WW 1
3.4	869	GSVIVT00018120001	_		hnRNP_G	13	r	6972651	6982989		RRM 1; CCHC 1
3.4	980	GSVIVT00024603001	hnRNP_F/hnRNP_H		vv-hnRNP-H	6	f	2643845	2646137		RRM 2
3.5	107	GSVIVT00004557001	hnRNP-like_5		vvAth1	0	f	103109682	103115801		HANP4_PAI-RBP! 1
3.5	107	GSVIVT00011423001	hnRNP-like_5		vvAth2	0	r	70751845	70757824		HANP4_PAI-RBP! 1
3.5	137	GSVIVT00016402001	hnRNP-like_1		vvUBP1b-1	11	r	645002	652423		RRM 3
3.5	137	GSVIVT00034047001	hnRNP-like_1		vvUBP1b-2	9	r	617388	623844		RRM 3
3.5	146	GSVIVT00027337001	hnRNP-like_3		vvRBP45a	19	f	6358453	6367245		RRM 3
3.5	410	GSVIVT00014763001	hnRNP-like_4		vvRBP47c	18	f	9294005	9299925		RRM 3
3.5	636	GSVIVT00024620001	hnRNP-like_3		vvRBP45d	6	f	2463669	2474818		RRM 3
3.5	870	GSVIVT00036552001	hnRNP-like_4		vvRBP47	3	r	5105299	5110465		RRM 3

4. Novel spliceosome proteins

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
4.1	148	GSVIVT00030682001	eIF3	sub2	vv-eIF3sub2a	1	f	6599941	6607441		WD40 4
4.1	206	GSVIVT00003363001	hTHO2		vvTHO2-1	0	f	22860294	22871267		Tho2
4.1	206	GSVIVT00029432001	hTHO2		vvTHO2-2	13	r	1469566	1470813		Tho2
4.1	206	GSVIVT00030624001	hTHO2		vvTHO2-3	1	r	5935719	5952282		Tho2
4.1	206	GSVIVT00030625001	hTHO2		vvTHO2-4	1	r	6034720	6048770		Tho2
4.1	254	GSVIVT00014829001	KIAA0983		vvKIAA0983-1	18	f	8645149	8650147		Fimp 1
4.1	291	GSVIVT00025658001	eIF3_sub6		vv-eIF3sub6	8	f	21442162	21447515
4.1	335	GSVIVT00030283001	C21orf66		vvC21orf66	1	r	2638434	2658530
4.1	400	GSVIVT00002011001	hHPR1		vvHPR1-1	0	f	17414287	17534092
4.1	400	GSVIVT00002021001	hHPR1		vvHPR1-2	0	f	17677165	17736614
4.1	483	GSVIVT00017659001	HsKin17	Rts2p	vvKin17-1	17	f	3766274	3767449
4.1	541	GSVIVT00010497001	CF_I-25kD		vvCFI-25kD-1	0	f	64481381	64494116
4.1	541	GSVIVT00026791001	CF_I-25kD		vvCFI-25kD-2	0	f	1969225	1974623
4.1	976	GSVIVT00038486001	CPSF_160K		vvCPSF-160k	0	f	2013015	2129097
4.1	1205	GSVIVT00016513001	CF_I-25kD		vvCFI-25kD	11	f	1383898	1386686
4.2	32	GSVIVT00005400001	PAB1/PAB2		vvPABP1/vvPAB1-1	0	r	27857415	27862446		RRM 4
4.2	32	GSVIVT00014861001	PAB1/PAB2		vvPABP1/vvPAB1-2	18	f	8409749	8423037		RRM 4
4.2	32	GSVIVT00019539001	PAB1/PAB2		vvPABP1/vvPAB1-3	7	f	11545849	11554052		RRM 4
4.2	32	GSVIVT00036627001	PAB1/PAB2		vvPABP1/vvPAB1-4	3	r	5778018	5794086		RRM 4
4.2	468	GSVIVT00000555001	PAB1/PAB2		vvPABP6/vvPAB7	8	r	17299388	17307086
4.2	2282	GSVIVT00034272001	PAB1/PAB2		vvPAB1/vvPAB2	9	r	2863275	2866608
4.3	69	GSVIVT00019684001	p72		p72-4/p72-3/p72-5	5	r	2297405	2304042		DEAD 1; Helicase_C
4.3	69	GSVIVT00020710001	p72		p72-4/p72-3/p72-5	14	r	16658362	16664387		DEAD 1; Helicase_C
4.3	100	GSVIVT00015999001	p72		p72-1	17	r	10809983	10815254		DEAD 1; Helicase 1
4.3	100	GSVIVT00034161001	p72		p72-2	9	r	1874128	1878498		DEAD 1; Helicase 1
4.3	136	GSVIVT00017018001	KIAA0052		vvKIAA0052a-1	11	f	10129829	10158175		DEAD 1; DSHCT 1; H
4.3	136	GSVIVT00017358001	KIAA0052		vvKIAA0052a-2	6	r	13039611	13059020		DEAD 1; DSHCT 1; H
4.3	339	GSVIVT00000562001	hDbp5	Dbp5p	vvDbp5	8	f	17366110	17371399
4.3	462	GSVIVT00003270001	Abstrakt	(Ded1p)	vvAbstrakt-a	0	f	25334918	25338817
4.3	654	GSVIVT00002999001	DDX35		vvDDX35	10	f	859567	891259
4.4	404	GSVIVT00022051001	KIAA0073		vvKIA0073	6	f	23677460	23718972
4.4	652	GSVIVT00026255001	PPIase-like_3		vvPPIL3	15	f	6536287	6539065
4.4	745	GSVIVT00012759001	Cyp-60		vvCYP-60	0	f	151898481	151899236
4.4	751	GSVIVT00032219001	SDCCAG10		vvSDCCAG10	4	f	1121284	1129582
4.5	54	GSVIVT00017899001	CDCL2_p110		vvCDCL2p110-1	17	r	1331663	1336891		Pkinase_Tyr 1; Pkin
4.5	54	GSVIVT00035090001	CDCL2_p110		vvCDCL2p110-1	0	f	3256952	3266735		Pkinase_Tyr 1; Pkin
4.5	70	GSVIVT00019345001	RNPC2		vvNPC2a/vvNPC2b	7	f	13276489	13293150		RRM 2
4.5	70	GSVIVT00036145001	RNPC2		vvNPC2a/vvNPC2b	3	r	1812205	1833454		RRM 2
4.5	99	GSVIVT00020994001	IMP3		vvIMP3/KOC	14	f	18900298	18905061		KH 4
4.5	180	GSVIVT00015806001	RBM5		vvRBM5	2	f	6815436	6829646		G-patch 1; RRM 2;
4.5	184	GSVIVT00003820001	PMSCL2		vvPMSCL2-1	8	r	2087638	2125699		3_5_exonuc 1; HRDC
4.5	261	GSVIVT00017791001	RACK1	Asc1p	vvRACK1a	17	f	2539491	2542063		WD40 5
4.5	289	GSVIVT00015280001	AcinusL		vvAcinusL-1	18	r	3925695	3931018		SAP 1
4.5	289	GSVIVT00019432001	AcinusL		vvAcinusL-2	7	f	12432393	12437207		SAP 1
4.5	294	GSVIVT00016018001	hSmu-1/FLJ10805		vvSmu-1	17	r	10533193	10557710
4.5	334	GSVIVT00024530001	TIP-49	Rvb1p	vvTIP49	6	r	3627960	3634906
4.5	343	GSVIVT00036713001	KIAA1604		vvKIAA1604	0	r	1183732	1203077
4.5	406	GSVIVT00021245001	CA150		vvCA150	1	f	13312449	13356408
4.5	408	GSVIVT00029145001	DGSI_protein		vvDGCR14	12	f	9586784	9588298
4.5	465	GSVIVT00008843001	SF4/F23858		vvSF4	13	f	14900673	14906821
4.5	473	GSVIVT00005291001	NOSIP		vvNOSIP-1	0	f	106293900	106299108
4.5	473	GSVIVT00011001001	NOSIP		vvNOSIP-2	0	f	74036595	74041770
4.5	476	GSVIVT00013882001	TFIP11/TIP39		vvTFIP11/TIP39a	16	r	345293	347884
4.5	484	GSVIVT00010591001	TIP-48		vvRuvB/TIP48a	7	f	10295056	10305851
4.5	544	GSVIVT00003533001	PUF60		vvCP33/PUF60like	0	r	27014042	27016611
4.5	552	GSVIVT00033559001	Ku70		vvKu70	5	f	18099790	18126861
4.5	556	GSVIVT00031419001	MFAP1		vvMFAP1a	11	f	13190174	13194516
4.5	633	GSVIVT00034114001	MGC4238		vvMORG1	9	f	1375197	1382621
4.5	643	GSVIVT00025875001	PMSCL2		vvPMSCL2-3	12	f	7347337	7355119
4.5	644	GSVIVT00016370001	PMSCL2		vvRED	11	r	389231	399495
4.5	646	GSVIVT00030264001	FLJ90157/DKFZp434E22		vvPSP1-1	1	f	2455301	2461693
4.5	646	GSVIVT00038161001	FLJ90157/DKFZp434E22		vvPSP1-2	14	r	11454810	11476621
4.5	649	GSVIVT00010394001	FLJ10374		vvCWF16-1	0	r	64955531	64967592
4.5	651	GSVIVT00000554001	Cactin		vvCactin	8	r	17288411	17297960
4.5	748	GSVIVT00006751001	KIAA0853		vvKIAA0853-1	2	f	1295361	1300093
4.5	748	GSVIVT00037112001	KIAA0853		vvKIAA0853-2	16	f	6865430	6870028
4.5	749	GSVIVT00038614001	FLJ10634		vvCAJ1/FLJ10634	3	r	8001031	8006471
4.5	750	GSVIVT00017597001	FLJ10206		vvFLJ10206	17	f	4680765	4696605
4.5	871	GSVIVT00015807001	MGC13125	Cwc26p	vvMGC13125	2	r	6780523	6807252
4.5	977	GSVIVT00007486001	SPF31		vvSPF31/Jiv	0	r	46752033	46772081
4.5	1203	GSVIVT00002458001	NuMA		vvCIP1/vvNuMA	2	f	939838	943857

5. Possible splicing related proteins

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
5.1	106	GSVIVT00012366001	Splicing_factor_like		vvSFL1	4	f	15667320	15669669		RRM 1
5.1	205	GSVIVT00032165001	Splicing_factor_like		vvSFL3	4	r	702437	708551		KH_1 2
5.1	224	GSVIVT00023812001	Splicing_factor_like		vvSFL6a	7	r	797819	807782		Pro_isomerase 1
5.1	547	GSVIVT00025448001	Splicing_factor_like		vvSFL5	8	r	19806690	19827046
5.1	641	GSVIVT00022667001	Splicing_factor_like		vvSFL4	14	r	1360320	1364575
5.2	121	GSVIVT00031075001	DNA_binding_protein_		vvDBP1a	14	r	5463368	5469345		NOP5NT 1; NOSIC 1;
5.2	333	GSVIVT00029111001	RNA_binding_2		vvRBD2b	12	f	9088346	9100053
5.2	338	GSVIVT00028385001	DNA_binding_protein_		vvDBP2a	10	f	4320144	4370448
5.2	341	GSVIVT00033645001	RNA_binding_1		vvRBD1b	8	f	727223	736003
5.2	401	GSVIVT00015937001	Chloroplast	RNA_Binding_31	vvCP31a-1	17	f	11564576	11567938
5.2	401	GSVIVT00020623001	Chloroplast	RNA_Binding_31	vvCP31a-2	14	f	15923128	15927552
5.2	1204	GSVIVT00021561001	Similar_to_RNA_bindi		vvRBD5	8	r	15857180	15859871
5.3	258	GSVIVT00014304001	SPT5		vvSPT5a	18	f	13353240	13362486		KOW 1; Supt5 2
5.3	295	GSVIVT00019173001	Elongation_Factor(M)		vvEFMa	15	r	3977580	3994250
5.3	759	GSVIVT00007283001	Elongation_Factor		vvEF1	2	f	4880371	4883540

Database

10 Plant Species

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

Vitis vinifera (Vv)

1. Small nuclear Ribonucleoprotein (snRNP)

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

2. Splicing factors

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

3. Splicing regulation

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

4. Novel spliceosome proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

5. Possible splicing related proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

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