Populus trichocarpa (Pt)
1. Small nuclear Ribonucleoprotein (snRNP)
Group |
CIWOG |
Gene |
hHomologs |
SeHomologs |
Gene Name |
Chr |
str |
from |
to |
Txn |
Domains |
Transcripts |
|
| 1.1 | 108 | jgi|Poptr1_1|709823|estExt_Genewise1_v1.C_LG_II0233 | SmD2 | ptSmD2-1 | 2 | r | 15058999 | 15061121 | Sm 1 | ||||
| 1.1 | 108 | jgi|Poptr1_1|814376|estExt_fgenesh4_kg.C_LG_XIV0024 | SmD2 | ptSmD2-2 | 14 | f | 5777592 | 5779599 | Sm 1 | ||||
| 1.1 | 147 | jgi|Poptr1_1|714948|estExt_Genewise1_v1.C_LG_V0812 | SmD1 | SmD1 | ptSmD1-a1 | 5 | f | 14306520 | 14308693 | Sm 1 | |||
| 1.1 | 147 | jgi|Poptr1_1|830114|estExt_fgenesh4_pm.C_LG_II0256 | SmD1 | SmD1 | ptSmD1-a2 | 2 | r | 3637821 | 3640140 | Sm 1 | |||
| 1.1 | 181 | jgi|Poptr1_1|737849|estExt_Genewise1_v1.C_LG_XVIII2933 | SmE | SmE | ptSmE-a1 | Sm 1 | |||||||
| 1.1 | 181 | jgi|Poptr1_1|746341|estExt_Genewise1_v1.C_1710010 | SmE | SmE | ptSmE-a2 | 171 | f | 60969 | 64451 | Sm 1 | |||
| 1.1 | 221 | jgi|Poptr1_1|552428|eugene3.00021743 | LSM4 | LSm4 | ptLSM4 | 2 | f | 14889952 | 14891802 | Sm 1 | |||
| 1.1 | 336 | jgi|Poptr1_1|233042|gw1.XI.1022.1 | SmB | SmB1 | ptSmB-a | 11 | r | 14629743 | 14630570 | Sm 1 | |||
| 1.1 | 344 | jgi|Poptr1_1|550771|eugene3.00020086 | SmD3 | SmD3 | ptSmD3-b1 | 2 | r | 601537 | 603008 | Sm 1 | |||
| 1.1 | 344 | jgi|Poptr1_1|715635|estExt_Genewise1_v1.C_LG_V2071 | SmD3 | SmD3 | ptSmD3-b2 | 5 | f | 17421913 | 17423615 | Sm 1 | |||
| 1.1 | 469 | jgi|Poptr1_1|717040|estExt_Genewise1_v1.C_LG_VI0793 | SmG | SmG | ptSmG-a-1 | 6 | f | 13934677 | 13936341 | Sm 1 | |||
| 1.1 | 469 | jgi|Poptr1_1|735363|estExt_Genewise1_v1.C_LG_XVI2449 | SmG | SmG | ptSmG-a-2 | 16 | f | 5801563 | 5803149 | Sm 1 | |||
| 1.1 | 472 | jgi|Poptr1_1|706444|estExt_Genewise1_v1.C_LG_I1870 | LSM7 | LSm7 | ptLSM7-1 | 1 | r | 19574398 | 19576304 | Sm 1 | |||
| 1.1 | 472 | jgi|Poptr1_1|722752|estExt_Genewise1_v1.C_LG_IX3230 | LSM7 | LSm7 | ptLSM7-2 | 9 | f | 6432371 | 6434792 | Sm 1 | |||
| 1.1 | 479 | jgi|Poptr1_1|813708|estExt_fgenesh4_kg.C_LG_III0001 | LSM2 | LSm2 | ptLSM2-1 | 3 | r | 531944 | 533864 | Sm 1 | |||
| 1.1 | 479 | jgi|Poptr1_1|814695|estExt_fgenesh4_kg.C_1630004 | LSM2 | LSm2 | ptLSM2-2 | 163 | f | 409784 | 413616 | Sm 1 | |||
| 1.1 | 539 | jgi|Poptr1_1|557672|eugene3.00090932 | LSM5 | LSm5 | ptLSM5/SAD1-1 | 9 | f | 5863246 | 5864549 | Sm 1 | |||
| 1.1 | 539 | jgi|Poptr1_1|641475|grail3.0053017102 | LSM5 | LSm5 | ptLSM5/SAD1-2 | 1 | r | 20273319 | 20274853 | Sm 1 | |||
| 1.1 | 540 | jgi|Poptr1_1|578592|eugene3.00180816 | SmF | SmF | ptSmF | 18 | r | 9524909 | 9528508 | Sm 1 | |||
| 1.1 | 545 | jgi|Poptr1_1|745826|estExt_Genewise1_v1.C_1580060 | LSM1 | LSm1 | ptLSM1b-1 | 158 | f | 199718 | 202274 | Sm 1 | |||
| 1.1 | 545 | jgi|Poptr1_1|830650|estExt_fgenesh4_pm.C_LG_III0051 | LSM1 | LSm1 | ptLSM1b-2 | 3 | r | 3434190 | 3436782 | Sm 1 | |||
| 1.1 | 548 | jgi|Poptr1_1|832613|estExt_fgenesh4_pm.C_LG_VIII0306 | LSM6 | LSm6 | ptLSM6a | 8 | f | 4825703 | 4826861 | Sm 1 | |||
| 1.1 | 550 | jgi|Poptr1_1|641478|grail3.0053017202 | LSM8 | LSm8 | ptLSM8 | 1 | r | 20276111 | 20277916 | Sm 1 | |||
| 1.1 | 561 | jgi|Poptr1_1|643482|grail3.0003059101 | LSM3 | LSm3 | ptLSM3a-1 | 2 | f | 4678622 | 4680087 | Sm 1 | |||
| 1.1 | 561 | jgi|Poptr1_1|831544|estExt_fgenesh4_pm.C_LG_V0415 | LSM3 | LSm3 | ptLSM3a-2 | 5 | r | 12973256 | 12975136 | Sm 1 | |||
| 1.2 | 92 | jgi|Poptr1_1|249129|gw1.XIX.1529.1 | Luc7 | ptLuc7a | 19 | r | 7358598 | 7362127 | DUF259 1 | ||||
| 1.2 | 92 | jgi|Poptr1_1|742740|estExt_Genewise1_v1.C_870092 | Luc7 | ptLuc7b | 87 | f | 554234 | 557822 | DUF259 1 | ||||
| 1.2 | 208 | jgi|Poptr1_1|730568|estExt_Genewise1_v1.C_LG_XIV0085 | Prp39 | ptPrp39a-1 | 14 | f | 12650756 | 12657227 | HAT 7; TPR-like 1 | ||||
| 1.2 | 208 | jgi|Poptr1_1|816978|estExt_fgenesh4_pg.C_LG_II2553 | Prp39 | ptPrp39a-2 | 2 | r | 23762748 | 23771899 | HAT 7; TPR-like 1 | ||||
| 1.2 | 403 | jgi|Poptr1_1|219158|gw1.VII.3463.1 | U1-70K | Snp1 | ptU1-70K | 7 | f | 10625068 | 10626477 | RRM 1 | |||
| 1.2 | 463 | jgi|Poptr1_1|712203|estExt_Genewise1_v1.C_LG_III1414 | U1C_Subunit | Yhc1 | ptU1C | 3 | r | 4483108 | 4484444 | C2H2 1; mrCtermi 3 | |||
| 1.2 | 475 | jgi|Poptr1_1|572009|eugene3.00140054 | FBP11 | Prp40 | ptPrp40a-1 | 14 | f | 429028 | 442109 | WW 2; FF 5 | |||
| 1.2 | 475 | jgi|Poptr1_1|767717|fgenesh4_pg.C_LG_IX000768 | FBP11 | Prp40 | ptPrp40a-2 | 9 | r | 4902986 | 4908345 | WW 2; FF 5 | |||
| 1.2 | 475 | jgi|Poptr1_1|829855|estExt_fgenesh4_pm.C_LG_I1075 | FBP11 | Prp40 | ptPrp40a-3 | 1 | r | 27492319 | 27503272 | WW 2; FF 5 | |||
| 1.2 | 538 | jgi|Poptr1_1|817271|estExt_fgenesh4_pg.C_LG_III0864 | Related_to_Luc7-like | Luc7 | ptLuc7-rl-1 | 3 | r | 10491966 | 10494228 | DUF259 1 | |||
| 1.2 | 538 | jgi|Poptr1_1|836384|estExt_fgenesh4_pm.C_290170 | Related_to_Luc7-like | Luc7 | ptLuc7-rl-2 | 29 | r | 3497564 | 3499906 | DUF259 1 | |||
| 1.2 | 981 | jgi|Poptr1_1|807512|fgenesh4_pm.C_LG_XIV000322 | U1A_Subunit | Mud1 | ptU1A-1 | 14 | f | 5698111 | 5701179 | RRM 2 | |||
| 1.2 | 981 | jgi|Poptr1_1|816688|estExt_fgenesh4_pg.C_LG_II1730 | U1A_Subunit | Mud1 | ptU1A-2 | 2 | r | 15165534 | 15168709 | RRM 2 | |||
| 1.3 | 170 | jgi|Poptr1_1|562830|eugene3.00070768 | SF3a120/SAP114_Subun | Prp21p | ptSAP114-1a-1 | 7 | r | 6368202 | 6370757 | SWAP/Surp 2 | |||
| 1.3 | 170 | jgi|Poptr1_1|801052|fgenesh4_pm.C_LG_V000144 | SF3a120/SAP114_Subun | Prp21p | ptSAP114-1a-1 | 5 | f | 2804755 | 2807308 | SWAP/Surp 2 | |||
| 1.3 | 203 | jgi|Poptr1_1|577374|eugene3.00170116 | SF3b160/SAP155_Subun | Hsh155 | ptSAP155 | 17 | r | 1066277 | 1070080 | HEAT 1; ARM 2; SAP | |||
| 1.3 | 222 | jgi|Poptr1_1|771129|fgenesh4_pg.C_LG_XI000282 | SF3b150/SAP145_Subun | Cus1p | ptSF3b150-1 | 11 | f | 2729685 | 2736155 | PSP 1; DUF382 1 | |||
| 1.3 | 222 | jgi|Poptr1_1|817772|estExt_fgenesh4_pg.C_LG_IV0271 | SF3b150/SAP145_Subun | Cus1p | ptSF3b150-2 | 4 | r | 2359686 | 2366248 | PSP 1; DUF382 1 | |||
| 1.3 | 228 | jgi|Poptr1_1|641471|grail3.0053016901 | SF3b_14b/PHP5A | Rds3p | ptSF3b_14b/PHP5A-a-1 | 1 | r | 20267912 | 20268244 | UPF0123 1 | |||
| 1.3 | 228 | jgi|Poptr1_1|649849|grail3.0001081901 | SF3b_14b/PHP5A | Rds3p | ptSF3b_14b/PHP5A-a-2 | 9 | f | 5867871 | 5868203 | UPF0123 1 | |||
| 1.3 | 228 | jgi|Poptr1_1|706561|estExt_Genewise1_v1.C_LG_I2118 | SF3b_14b/PHP5A | Rds3p | ptSF3b_14b/PHP5A-a-3 | 1 | r | 20271325 | 20271657 | UPF0123 1 | |||
| 1.3 | 228 | jgi|Poptr1_1|833165|estExt_fgenesh4_pm.C_LG_IX0434 | SF3b_14b/PHP5A | Rds3p | ptSF3b_14b/PHP5A-a-4 | 9 | f | 5870850 | 5871182 | UPF0123 1 | |||
| 1.3 | 256 | jgi|Poptr1_1|803217|fgenesh4_pm.C_LG_VIII000172 | SF3b120/SAP130_Subun | Rse1p | ptSAP130a-1 | 8 | r | 2661929 | 2665948 | CPSF_A 1; WD40-like | |||
| 1.3 | 256 | jgi|Poptr1_1|805547|fgenesh4_pm.C_LG_X000853 | SF3b120/SAP130_Subun | Rse1p | ptSAP130a-2 | 10 | f | 18389730 | 18393710 | CPSF_A 1; WD40-like | |||
| 1.3 | 347 | jgi|Poptr1_1|239906|gw1.XIII.155.1 | U2B''_Subunit | Msl1p | ptU2B''a | 13 | r | 12323837 | 12326841 | RRM 2 | |||
| 1.3 | 347 | jgi|Poptr1_1|836161|estExt_fgenesh4_pm.C_LG_XIX0309 | U2B''_Subunit | Msl1p | ptU2B''b | 19 | r | 11487677 | 11490717 | RRM 2 | |||
| 1.3 | 412 | jgi|Poptr1_1|548145|eugene3.00010586 | U2A'_Subunit | Lea1p | ptU2A-1 | 1 | r | 5187767 | 5191850 | LRR 4 | |||
| 1.3 | 412 | jgi|Poptr1_1|830906|estExt_fgenesh4_pm.C_LG_III0531 | U2A'_Subunit | Lea1p | ptU2A-2 | 3 | f | 14273628 | 14278101 | LRR 4 | |||
| 1.3 | 460 | jgi|Poptr1_1|649901|grail3.0001086301 | p14 | Snu17p | ptP14-1a | 9 | f | 6204191 | 6204565 | RRM 1 | |||
| 1.3 | 460 | jgi|Poptr1_1|706505|estExt_Genewise1_v1.C_LG_I1980 | p14 | Snu17p | ptP14-1b | 1 | r | 19871616 | 19871993 | RRM 1 | |||
| 1.3 | 461 | jgi|Poptr1_1|251016|gw1.XV.452.1 | p14 | Snu17p | ptSAP61-1 | 15 | r | 1241051 | 1246553 | C2H2 1 | |||
| 1.3 | 461 | jgi|Poptr1_1|569530|eugene3.00120183 | p14 | Snu17p | ptSAP61-2 | 12 | f | 1694628 | 1700030 | C2H2 1 | |||
| 1.3 | 466 | jgi|Poptr1_1|565775|eugene3.00100333 | SF3b_10 | ptSF3b10a-1 | 10 | f | 5008985 | 5010657 | SF3b10 1 | ||||
| 1.3 | 466 | jgi|Poptr1_1|832840|estExt_fgenesh4_pm.C_LG_VIII0705 | SF3b_10 | ptSF3b10a-2 | 8 | f | 11335412 | 11337181 | SF3b10 1 | ||||
| 1.3 | 470 | jgi|Poptr1_1|424250|gw1.57.217.1 | SF3b53/SAP49_Subunit | Hsh49p | ptSAP49a | 57 | r | 1733600 | 1738333 | RRM 2 | |||
| 1.3 | 758 | jgi|Poptr1_1|667866|grail3.0025001901 | SF3a66/SAP62_Subunit | Prp11p | ptSAP62 | 16 | r | 8656676 | 8661936 | C2H2 1 | |||
| 1.4 | 44 | jgi|Poptr1_1|558749|eugene3.00050364 | 116kD_Subunit/elonga | Snu114p | ptU5-116-2a | 5 | f | 3158615 | 3161872 | EFG_C 1; GTP_EFTU | |||
| 1.4 | 44 | jgi|Poptr1_1|562883|eugene3.00070821 | 116kD_Subunit/elonga | Snu114p | ptU5-116-2b | 7 | f | 7295064 | 7297910 | EFG_C 1; GTP_EFTU | |||
| 1.4 | 44 | jgi|Poptr1_1|562884|eugene3.00070822 | 116kD_Subunit/elonga | Snu114p | ptU5-116-2c | 7 | r | 7333004 | 7336119 | EFG_C 1; GTP_EFTU | |||
| 1.4 | 75 | jgi|Poptr1_1|296528|gw1.82.68.1 | 200kD_Subunit/Helica | Brr2p | ptU5-200-1 | 82 | r | 348595 | 379064 | DEAD 1; Helicase_C | |||
| 1.4 | 75 | jgi|Poptr1_1|773179|fgenesh4_pg.C_LG_XII000954 | 200kD_Subunit/Helica | Brr2p | ptU5-200-2 | 12 | r | 11358573 | 11366380 | DEAD 1; Helicase_C | |||
| 1.4 | 75 | jgi|Poptr1_1|776276|fgenesh4_pg.C_LG_XV000704 | 200kD_Subunit/Helica | Brr2p | ptU5-200-3 | 15 | r | 7132045 | 7139797 | DEAD 1; Helicase_C | |||
| 1.4 | 182 | jgi|Poptr1_1|592707|eugene3.00440042 | 220kD_Subunit | Prp8p | ptU5-220/Prp8a | 44 | f | 415915 | 426917 | Mov34 1 | |||
| 1.4 | 259 | jgi|Poptr1_1|775952|fgenesh4_pg.C_LG_XV000380 | 100kD_Subunit | Prp28p | ptU5-100KD | 15 | r | 4132638 | 4134770 | DEAD 1; Helicase_C | |||
| 1.4 | 402 | jgi|Poptr1_1|730490|estExt_Genewise1_v1.C_LG_XIII3357 | 102KD/Prp6-like | Prp6p | ptU5-102KD | Ubiquitin 1; TPR 3 | |||||||
| 1.4 | 405 | jgi|Poptr1_1|200128|gw1.IX.593.1 | 116kD_Subunit/elonga | Snu114p | ptU5-116-3a | 9 | r | 982003 | 985053 | EFG_C 1; GTP_EFTU | |||
| 1.4 | 405 | jgi|Poptr1_1|200140|gw1.IX.605.1 | 116kD_Subunit/elonga | Snu114p | ptU5-116-3b | 9 | r | 995861 | 998914 | EFG_C 1; GTP_EFTU | |||
| 1.4 | 405 | jgi|Poptr1_1|581305|eugene3.129250001 | 116kD_Subunit/elonga | Snu114p | ptU5-116-3 | 12925 | r | 110 | 1173 | EFG_C 1; GTP_EFTU | |||
| 1.4 | 413 | jgi|Poptr1_1|669672|grail3.0020036201 | 116kD_Subunit/elonga | Snu114p | ptU5-116-1a-1 | 18 | f | 11326513 | 11331085 | EFG_C 1; GTP_EFTU 1 | |||
| 1.4 | 413 | jgi|Poptr1_1|832004|estExt_fgenesh4_pm.C_LG_VI0503 | 116kD_Subunit/elonga | Snu114p | ptU5-116-1a-2 | 6 | r | 11308075 | 11312648 | EFG_C 1; GTP_EFTU 1 | |||
| 1.4 | 637 | jgi|Poptr1_1|813981|estExt_fgenesh4_kg.C_LG_VII0024 | 15kD_Subunit | Dib1p | ptU5-15 | 7 | f | 6124511 | 6126730 | DIMI 1; Thioredoxin | |||
| 1.4 | 755 | jgi|Poptr1_1|574420|eugene3.00190894 | 40kD_Subunit | ptU5-40 | 19 | r | 10509129 | 10510166 | WD-40 7 | ||||
| 1.4 | 1099 | jgi|Poptr1_1|173864|gw1.I.2464.1 | 200kD_Subunit/Helica | Brr2p | ptU5-200-3 | 1 | f | 21677702 | 21684845 | DEAD 1; Sec63 1; Ru | |||
| 1.5 | 223 | jgi|Poptr1_1|826867|estExt_fgenesh4_pg.C_410046 | U4/U6-15.5K | Snu13p | ptTri15.5-1a | 41 | f | 509769 | 511509 | Ribosomal_L7Ae 1 | |||
| 1.5 | 260 | jgi|Poptr1_1|245102|gw1.XIV.1845.1 | U4/U6-61KD | Prp31 | ptU5-61/Prp31a-1 | 14 | f | 3866635 | 3869891 | Nop 1 | |||
| 1.5 | 260 | jgi|Poptr1_1|552316|eugene3.00021631 | U4/U6-61KD | Prp31 | ptU5-61/Prp31a-2 | 2 | f | 13632935 | 13636482 | Nop 1 | |||
| 1.5 | 411 | jgi|Poptr1_1|227722|gw1.X.2419.1 | U4/U6-90K/SAP90 | Prp3p | ptSAP90-1 | 10 | f | 18486913 | 18489265 | ||||
| 1.5 | 411 | jgi|Poptr1_1|765377|fgenesh4_pg.C_LG_VIII000391 | U4/U6-90K/SAP90 | Prp3p | ptSAP90-1 | 8 | r | 2600995 | 2603279 | ||||
| 1.5 | 756 | jgi|Poptr1_1|801796|fgenesh4_pm.C_LG_VI000143 | U4/U6-60K/SAP60 | Prp4p | ptSAP60 | 6 | r | 2968182 | 2971187 | WD-40 7;SFM 1;WD40 | |||
| 1.6 | 399 | jgi|Poptr1_1|413030|gw1.III.133.1 | Tri-110KD | SAD1 | ptTri110-1 | 3 | r | 13550664 | 13556473 | SART-1 1 | |||
| 1.6 | 399 | jgi|Poptr1_1|640254|grail3.0008027801 | Tri-110KD | SAD1 | ptTri110-2 | 1 | f | 5955911 | 5958963 | SART-1 1 | |||
| 1.6 | 634 | jgi|Poptr1_1|578585|eugene3.00180809 | (U4/U6.U5) | Tri-27kD/RY1 | ptTri-27kD/RY1 | 18 | f | 9407688 | 9408275 | ||||
| 1.6 | 638 | jgi|Poptr1_1|254809|gw1.XVI.748.1 | Tri-65_KD | Snu66p | ptTri65a-1 | 16 | f | 676642 | 680102 | UCH 1; ZnF_UBP 1 | |||
| 1.6 | 638 | jgi|Poptr1_1|560149|eugene3.00060108 | Tri-65_KD | Snu66p | ptTri65a-2 | 6 | r | 641302 | 645196 | UCH 1; ZnF_UBP 1 | |||
| 1.6 | 753 | jgi|Poptr1_1|729449|estExt_Genewise1_v1.C_LG_XIII0652 | hSnu23/FLJ31121 | Snu23p | ptSnu23 | ZnF_U1 1 | |||||||
| 1.7 | 225 | jgi|Poptr1_1|798383|fgenesh4_pm.C_LG_II000072 | U11/U12-25K | (-99_protein) | ptU11/U12-25K | 2 | r | 868774 | 869723 | C2H2 1 | |||
| 1.7 | 346 | jgi|Poptr1_1|573888|eugene3.00190362 | U11/U12-65K | ptU11/U12-65K-1 | 19 | f | 4751758 | 4756940 | RRM 2;PHOSPHOPANTET | ||||
| 1.7 | 346 | jgi|Poptr1_1|729948|estExt_Genewise1_v1.C_LG_XIII1925 | U11/U12-65K | ptU11/U12-65K-2 | RRM 2;PHOSPHOPANTET | ||||||||
| 1.7 | 982 | jgi|Poptr1_1|782205|fgenesh4_pg.C_scaffold_64000067 | U11/U12-35K | ptU11/U12-35kD | 64 | r | 525721 | 528733 | RRM 1 | ||||
| 1.7 | 1101 | jgi|Poptr1_1|228125|gw1.X.2822.1 | U11/U12-31K | (MADP1) | ptU11/U12-31K | 10 | f | 19414024 | 19414413 | RRM 1; CCHC 1 |
2. Splicing factors
Group |
CIWOG |
Gene |
hHomologs |
SeHomologs |
Gene Name |
Chr |
str |
from |
to |
Txn |
Domains |
Transcripts |
|
| 2.1 | 49 | jgi|Poptr1_1|560016|eugene3.00051631 | U2AF35 | ptU2AF35/AUS-1 | 5 | r | 17813724 | 17814542 | RRM 1; CCHC 2; | ||||
| 2.1 | 49 | jgi|Poptr1_1|642753|grail3.0003001802 | U2AF35 | ptU2AF35/AUS-2 | 2 | f | 182016 | 182837 | RRM 1; CCHC 2; | ||||
| 2.1 | 49 | jgi|Poptr1_1|676151|grail3.0028027401 | U2AF35 | ptU2AF35/AUS-3 | 28 | f | 3089153 | 3090206 | RRM 1; CCHC 2; | ||||
| 2.1 | 49 | jgi|Poptr1_1|741667|estExt_Genewise1_v1.C_660125 | U2AF35 | ptU2AF35/AUS-4 | 66 | r | 302589 | 303547 | RRM 1; CCHC 2; | ||||
| 2.1 | 55 | jgi|Poptr1_1|424261|gw1.57.228.1 | U2AF65 | ptU2AF65a/AULb | 57 | r | 1746916 | 1750282 | RRM 3; | ||||
| 2.1 | 55 | jgi|Poptr1_1|719459|estExt_Genewise1_v1.C_LG_VII3407 | U2AF65 | ptU2AF65a/AULb | 7 | f | 10540394 | 10543154 | RRM 3; | ||||
| 2.1 | 72 | jgi|Poptr1_1|194989|gw1.IV.78.1 | PTB/hnRNP_I | ptPTB2a | 4 | r | 12304059 | 12308822 | RRM 2 | ||||
| 2.1 | 72 | jgi|Poptr1_1|251120|gw1.XV.556.1 | PTB/hnRNP_I | ptPTB2b | 15 | r | 1490510 | 1496943 | RRM 2 | ||||
| 2.1 | 72 | jgi|Poptr1_1|259181|gw1.XVII.1172.1 | PTB/hnRNP_I | ptPTB2c | 17 | r | 4953902 | 4959068 | RRM 2 | ||||
| 2.1 | 169 | jgi|Poptr1_1|410596|gw1.II.1931.1 | PTB/hnRNP_I | ptPTB1-1 | 2 | r | 4457696 | 4463256 | RRM 4 | ||||
| 2.1 | 169 | jgi|Poptr1_1|714769|estExt_Genewise1_v1.C_LG_V0370 | PTB/hnRNP_I | ptPTB1-2 | 5 | f | 13257648 | 13263036 | RRM 4 | ||||
| 2.1 | 398 | jgi|Poptr1_1|414256|gw1.III.1359.1 | SF1/BBP | ptSF1/BBP-1 | 3 | f | 10349283 | 10351343 | RRM 1; CCHC 2; KH | ||||
| 2.1 | 398 | jgi|Poptr1_1|423773|gw1.29.285.1 | SF1/BBP | ptSF1/BBP-2 | 29 | f | 3351797 | 3353908 | RRM 1; CCHC 2; KH | ||||
| 2.1 | 409 | jgi|Poptr1_1|229825|gw1.X.4522.1 | U2AF65 | ptAUL2 | 10 | r | 5177896 | 5180843 | RRM 1 | ||||
| 2.1 | 481 | jgi|Poptr1_1|722993|estExt_Genewise1_v1.C_LG_IX3662 | CBP80 | Cbc2p | ptCBP80 | 9 | f | 7465569 | 7476971 | MIF4G 1; ARM 3 | |||
| 2.1 | 553 | jgi|Poptr1_1|596778|eugene3.00860069 | U2AF35_related_prote | ptUrp-1 | 86 | f | 549800 | 552902 | RRM 1; CCCH 2 | ||||
| 2.1 | 553 | jgi|Poptr1_1|681070|grail3.0086005901 | U2AF35_related_prote | ptUrp-2 | 86 | f | 547764 | 548117 | RRM 1; CCCH 2 | ||||
| 2.1 | 635 | jgi|Poptr1_1|718232|estExt_Genewise1_v1.C_LG_VII0586 | CBP20 | Cbc1 | ptCBP20-1 | 7 | f | 607713 | 610948 | RRM 1 | |||
| 2.1 | 635 | jgi|Poptr1_1|836651|estExt_fgenesh4_pm.C_640064 | CBP20 | Cbc1 | ptCBP20-2 | 64 | r | 1818314 | 1821543 | RRM 1 | |||
| 2.2 | 25 | jgi|Poptr1_1|409414|gw1.II.749.1 | SF2/ASF | ptSRp34-1 | 2 | r | 14984307 | 14989319 | RRM 2 | ||||
| 2.2 | 25 | jgi|Poptr1_1|421685|gw1.XII.145.1 | SF2/ASF | ptSRp34-2 | 12 | r | 2404503 | 2407270 | RRM 2 | ||||
| 2.2 | 25 | jgi|Poptr1_1|773626|fgenesh4_pg.C_LG_XIII000080 | SF2/ASF | ptSRp30-3 | 13 | f | 1055894 | 1058048 | RRM 2 | ||||
| 2.2 | 25 | jgi|Poptr1_1|811208|fgenesh4_pm.C_scaffold_133000019 | SF2/ASF | ptSRp30-4 | 133 | r | 316357 | 318541 | RRM 2 | ||||
| 2.2 | 31 | jgi|Poptr1_1|248500|gw1.XIX.900.1 | 9G8 | ptRSZp21a-1 | 19 | f | 4261494 | 4265999 | RRM 1; CCHC 1 | ||||
| 2.2 | 31 | jgi|Poptr1_1|261622|gw1.XVIII.2163.1 | 9G8 | ptRSZp21a-2 | 18 | r | 6928696 | 6930309 | RRM 1; CCHC 1 | ||||
| 2.2 | 31 | jgi|Poptr1_1|583120|eugene3.01470005 | 9G8 | ptRSZp21a-3 | 147 | r | 95443 | 96675 | RRM 1; CCHC 1 | ||||
| 2.2 | 61 | jgi|Poptr1_1|645719|grail3.0067008905 | SC35 | ptSC35-1 | 3 | r | 1316781 | 1318407 | RRM 1; | ||||
| 2.2 | 61 | jgi|Poptr1_1|709848|estExt_Genewise1_v1.C_LG_II0296 | SC35 | ptSC35-2 | 2 | r | 6877890 | 6879471 | RRM 1; | ||||
| 2.2 | 151 | jgi|Poptr1_1|256035|gw1.XVI.1974.1 | TASR-2 | ptSCL33-1 | 16 | r | 4252173 | 4253529 | RRM 1 | ||||
| 2.2 | 151 | jgi|Poptr1_1|547618|eugene3.00010059 | TASR-2 | ptSCL33-2 | 1 | f | 436416 | 439510 | RRM 1 | ||||
| 2.2 | 204 | jgi|Poptr1_1|244286|gw1.XIV.1029.1 | Plant_Novel_SR_prote | ptRSp41 | 14 | r | 1982824 | 1985712 | RRM 2 | ||||
| 2.2 | 204 | jgi|Poptr1_1|253698|gw1.XV.3134.1 | Plant_Novel_SR_prote | ptRSp40 | 15 | r | 9883964 | 9887020 | RRM 2 | ||||
| 2.2 | 204 | jgi|Poptr1_1|411608|gw1.II.2943.1 | Plant_Novel_SR_prote | ptRSp41 | 2 | f | 11727043 | 11730295 | RRM 2 | ||||
| 2.2 | 204 | jgi|Poptr1_1|423171|gw1.XII.1631.1 | Plant_Novel_SR_prote | ptRSp40 | 12 | f | 13253310 | 13256156 | RRM 2 | ||||
| 2.2 | 226 | jgi|Poptr1_1|245070|gw1.XIV.1813.1 | Plant_Novel_SR_prote | ptRSp31-1 | 14 | r | 3744277 | 3746315 | RRM 2 | ||||
| 2.2 | 226 | jgi|Poptr1_1|552308|eugene3.00021623 | Plant_Novel_SR_prote | ptRSp31-2 | 2 | r | 13479612 | 13481692 | RRM 2 | ||||
| 2.2 | 292 | jgi|Poptr1_1|227475|gw1.X.2172.1 | TASR-2 | ptSCL30-1 | 10 | r | 17866427 | 17869657 | RRM 1 | ||||
| 2.2 | 292 | jgi|Poptr1_1|656109|grail3.0049021701 | TASR-2 | ptSCL30-2 | 8 | f | 3119448 | 3122875 | RRM 1 | ||||
| 2.2 | 752 | jgi|Poptr1_1|250704|gw1.XV.140.1 | SF2/ASF | ptSRp34b | 15 | f | 320987 | 323470 | RRM 2 | ||||
| 2.2 | 978 | jgi|Poptr1_1|420699|gw1.VIII.2127.1 | TASR-2 | ptSCL28-1 | 8 | r | 13587664 | 13588503 | RRM 1 | ||||
| 2.2 | 978 | jgi|Poptr1_1|814124|estExt_fgenesh4_kg.C_LG_X0007 | TASR-2 | ptSCL28-2 | 10 | f | 3839917 | 3843639 | RRM 1 | ||||
| 2.3 | 13 | jgi|Poptr1_1|774677|fgenesh4_pg.C_LG_XIV000587 | hPrp43 | Prp43p | ptPrp43 | 14 | r | 5085819 | 5089341 | DEAD 1; Helicase_C | |||
| 2.3 | 13 | jgi|Poptr1_1|799231|fgenesh4_pm.C_LG_II000920 | hPrp43 | Prp43p | ptPrp43 | 2 | f | 16405454 | 16408817 | DEAD 1; Helicase_C | |||
| 2.3 | 255 | jgi|Poptr1_1|819630|estExt_fgenesh4_pg.C_LG_VI1900 | SR140 | ptSR140-1a | 6 | f | 18102833 | 18109362 | Surp 1;RRM 1;RPR 1 | ||||
| 2.3 | 255 | jgi|Poptr1_1|825788|estExt_fgenesh4_pg.C_LG_XVIII0504 | SR140 | ptSR140-1b | Surp 1;RRM 1;RPR 1 | ||||||||
| 2.3 | 549 | jgi|Poptr1_1|596786|eugene3.00860077 | SPF30 | ptSPF30 | 86 | r | 632655 | 636361 | Tudor 1 | ||||
| 2.3 | 647 | jgi|Poptr1_1|235093|gw1.XI.3073.1 | SPF45 | ptSPF45-1 | 11 | f | 7767917 | 7771069 | DIII/G-patch domain | ||||
| 2.3 | 647 | jgi|Poptr1_1|798178|fgenesh4_pm.C_LG_I001181 | SPF45 | ptSPF45-2 | 1 | r | 30427448 | 30429949 | DIII/G-patch domain | ||||
| 2.4 | 1 | jgi|Poptr1_1|280872|gw1.261.22.1 | HSP73/HSPA8 | PtHSP73-1 | 261 | f | 82326 | 86183 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|280896|gw1.261.46.1 | HSP73/HSPA8 | PtHSP73-2 | 261 | r | 151484 | 154023 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|280909|gw1.261.59.1 | HSP73/HSPA8 | PtHSP73-3 | 261 | r | 157545 | 161408 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|563887|eugene3.00080482 | HSP73/HSPA8 | PtHSP73-4 | 8 | f | 2959400 | 2962010 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|563894|eugene3.00080489 | HSP73/HSPA8 | PtHSP73-5 | 8 | r | 2996991 | 2999597 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|569578|eugene3.00120231 | HSP73/HSPA8 | PtHSP73-6 | 12 | f | 2121087 | 2124025 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|570800|eugene3.00130164 | HSP73/HSPA8 | PtHSP73-7 | 13 | f | 1187112 | 1190039 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|587191|eugene3.02080008 | HSP73/HSPA8 | PtHSP73-8 | 208 | r | 104093 | 106060 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|587192|eugene3.02080009 | HSP73/HSPA8 | PtHSP73-9 | 208 | f | 107951 | 109918 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|675629|grail3.0261001101 | HSP73/HSPA8 | PtHSP73-10 | 261 | r | 141289 | 143595 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|711719|estExt_Genewise1_v1.C_LG_III0234 | HSP73/HSPA8 | PtHSP73-11 | 3 | f | 13205655 | 13208558 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|765441|fgenesh4_pg.C_LG_VIII000455 | HSP73/HSPA8 | PtHSP73-12 | 8 | r | 3006165 | 3008329 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|800179|fgenesh4_pm.C_LG_III000644 | HSP73/HSPA8 | PtHSP73-13 | 3 | f | 16202134 | 16204089 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|822482|estExt_fgenesh4_pg.C_LG_X1852 | HSP73/HSPA8 | PtHSP73-14 | 10 | r | 18050456 | 18052999 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|829431|estExt_fgenesh4_pm.C_LG_I0291 | HSP73/HSPA8 | PtHSP73-15 | 1 | r | 6390616 | 6393455 | Hsp70 1; | ||||
| 2.4 | 1 | jgi|Poptr1_1|832542|estExt_fgenesh4_pm.C_LG_VIII0195 | HSP73/HSPA8 | PtHSP73-16 | 8 | r | 2990210 | 2992498 | Hsp70 1; | ||||
| 2.4 | 134 | jgi|Poptr1_1|200273|gw1.IX.738.1 | G10 | Cwc14p | ptG10-1 | 9 | r | 1345564 | 1346924 | G10 1; | |||
| 2.4 | 134 | jgi|Poptr1_1|293379|gw1.66.52.1 | G10 | Cwc14p | ptG10-1 | 66 | f | 161328 | 161978 | G10 1; | |||
| 2.4 | 167 | jgi|Poptr1_1|554463|eugene3.00031096 | hSyf3/CRN | Clf1/Syf3p | ptCRN1a-1 | 3 | f | 12766839 | 12771605 | TPR 1; HAT 14; TPR | |||
| 2.4 | 167 | jgi|Poptr1_1|797324|fgenesh4_pm.C_LG_I000327 | hSyf3/CRN | Clf1/Syf3p | ptCRN1a-2 | 1 | r | 6896596 | 6901194 | TPR 1; HAT 14; TPR | |||
| 2.4 | 168 | jgi|Poptr1_1|813818|estExt_fgenesh4_kg.C_LG_IV0063 | hSyf3/CRN | Clf1/Syf3p | ptCypE1a-1 | 4 | f | 15507195 | 15507713 | Pro_isomerase 1 | |||
| 2.4 | 168 | jgi|Poptr1_1|816014|estExt_fgenesh4_pg.C_LG_II0204 | hSyf3/CRN | Clf1/Syf3p | ptCypE1a-2 | 2 | r | 1292933 | 1293451 | Pro_isomerase 1 | |||
| 2.4 | 168 | jgi|Poptr1_1|818813|estExt_fgenesh4_pg.C_LG_V1539 | hSyf3/CRN | Clf1/Syf3p | ptCypE1a-3 | 5 | f | 16726605 | 16727123 | Pro_isomerase 1 | |||
| 2.4 | 168 | jgi|Poptr1_1|821113|estExt_fgenesh4_pg.C_LG_IX0365 | hSyf3/CRN | Clf1/Syf3p | ptCypE1a-4 | 9 | r | 2330104 | 2330622 | Pro_isomerase 1 | |||
| 2.4 | 288 | jgi|Poptr1_1|713683|estExt_Genewise1_v1.C_LG_IV2251 | hSyf1 | Syf1p | ptSyf1 | 4 | f | 2056694 | 2061387 | TPR 1;HAT 10;TPRli | |||
| 2.4 | 297 | jgi|Poptr1_1|203457|gw1.IX.3922.1 | hECM2 | Ecm2p | ptECM2-1a-1 | 9 | r | 8014898 | 8017645 | RRM 1; CCCH 1 | |||
| 2.4 | 297 | jgi|Poptr1_1|557974|eugene3.00091234 | hECM2 | Ecm2p | ptECM2-1a-2 | 9 | r | 8023448 | 8026140 | RRM 1; CCCH 1 | |||
| 2.4 | 407 | jgi|Poptr1_1|574967|eugene3.00150362 | SPF27/BCAS2 | ptSPF27 | 15 | r | 3495650 | 3497799 | BCAS2 1 | ||||
| 2.4 | 414 | jgi|Poptr1_1|565819|eugene3.00100377 | hPrp19 | Prp19p | ptPrp19a-1 | 10 | f | 5373764 | 5381799 | WD-40 7; Ubox 1 | |||
| 2.4 | 414 | jgi|Poptr1_1|820827|estExt_fgenesh4_pg.C_LG_VIII1499 | hPrp19 | Prp19p | ptPrp19a-2 | 8 | f | 11558718 | 11567138 | WD-40 7; Ubox 1 | |||
| 2.4 | 467 | jgi|Poptr1_1|725686|estExt_Genewise1_v1.C_LG_X3939 | PRL1 | Prp46p | ptPRL1 | 10 | r | 2082494 | 2087616 | WD-40 2;WD40like 1 | |||
| 2.4 | 471 | jgi|Poptr1_1|831321|estExt_fgenesh4_pm.C_LG_IV0542 | GCIP_p29 | Syf2 | ptGCIPp29 | 4 | f | 15955549 | 15957360 | ||||
| 2.4 | 546 | jgi|Poptr1_1|550238|eugene3.00012679 | AD-002 | Cwc15p | ptAD-002 | 1 | f | 30180025 | 30182596 | Cwf_Cwc_15 1 | |||
| 2.4 | 559 | jgi|Poptr1_1|248127|gw1.XIX.527.1 | CDC5 | Cef1 | ptCDC5-1 | 19 | f | 2279379 | 2285422 | SANT 2 | |||
| 2.4 | 559 | jgi|Poptr1_1|571093|eugene3.00130457 | CDC5 | Cef1 | ptCDC5-2 | 13 | f | 3307961 | 3313850 | SANT 2 | |||
| 2.4 | 642 | jgi|Poptr1_1|555007|eugene3.00031640 | KIAA0560 | ptAquarius | 3 | f | 17163475 | 17173809 | |||||
| 2.4 | 645 | jgi|Poptr1_1|578522|eugene3.00180746 | SKIP | Prp45p | ptSKIP-1 | 18 | f | 8733656 | 8735491 | SKIP/SNW 1 | |||
| 2.4 | 645 | jgi|Poptr1_1|787442|fgenesh4_pg.C_scaffold_211000011 | SKIP | Prp45p | ptSKIP-2 | 211 | r | 182007 | 183831 | SKIP/SNW 1 | |||
| 2.4 | 866 | jgi|Poptr1_1|817783|estExt_fgenesh4_pg.C_LG_IV0304 | MGC23918 | ptMGC23918 | 4 | r | 2756352 | 2757925 | |||||
| 2.4 | 983 | jgi|Poptr1_1|835479|estExt_fgenesh4_pm.C_LG_XVI0258 | PPIase-like_1 | ptPPIase-like1 | 16 | f | 5581162 | 5582771 | Pro_isomerase 1 | ||||
| 2.5 | 122 | jgi|Poptr1_1|564516|eugene3.00081111 | hPrp4 | kinase | ptPRP4K-1 | 8 | r | 7616040 | 7618866 | Pkinase 1;TyrKc 1; | |||
| 2.5 | 220 | jgi|Poptr1_1|208803|gw1.V.4204.1 | TBL1-rp_1 | ptTBL1-rp1-1 | 5 | f | 5713370 | 5727206 | WD-40 5; Peptidease | ||||
| 2.5 | 220 | jgi|Poptr1_1|746796|estExt_Genewise1_v1.C_2050013 | TBL1-rp_1 | ptTBL1-rp1-2 | 205 | f | 72493 | 78945 | WD-40 5; Peptidease | ||||
| 2.5 | 464 | jgi|Poptr1_1|567580|eugene3.00102138 | N-CoR1 | ptN-CoR1-1 | 10 | r | 18887716 | 18894908 | SANT 2;Homeodomain_ | ||||
| 2.5 | 464 | jgi|Poptr1_1|820268|estExt_fgenesh4_pg.C_LG_VIII0326 | N-CoR1 | ptN-CoR1-2 | 8 | f | 2164872 | 2171987 | SANT 2;Homeodomain_ | ||||
| 2.5 | 474 | jgi|Poptr1_1|821220|estExt_fgenesh4_pg.C_LG_IX0581 | FBP-21 | ptFBP21 | 9 | f | 3710513 | 3713658 | C2H2 1 | ||||
| 2.5 | 543 | jgi|Poptr1_1|559701|eugene3.00051316 | Smc-1 | ptSmc1 | 5 | r | 15583638 | 15597024 | ATP_GTP_A_BS 1;SMC_ | ||||
| 2.5 | 868 | jgi|Poptr1_1|652518|grail3.0024018601 | NPW38 | ppNPW38 | 6 | r | 1921893 | 1922684 | WW 2 | ||||
| 2.6 | 65 | jgi|Poptr1_1|279773|gw1.226.19.1 | ALY | ptALY-1a | 226 | f | 121469 | 122512 | RRM 1; | ||||
| 2.6 | 65 | jgi|Poptr1_1|280851|gw1.261.1.1 | ALY | ptALY-1b | 261 | f | 11359 | 12382 | RRM 1; | ||||
| 2.6 | 65 | jgi|Poptr1_1|814194|estExt_fgenesh4_kg.C_LG_X0079 | ALY | ptALY-1c | 10 | r | 18144200 | 18146972 | RRM 1; | ||||
| 2.6 | 65 | jgi|Poptr1_1|815363|estExt_fgenesh4_pg.C_LG_I1776 | ALY | ptALY-1d | 1 | r | 17986658 | 17993725 | RRM 1; | ||||
| 2.6 | 80 | jgi|Poptr1_1|578196|eugene3.00180420 | UAP56 | ptUAP56-1 | 18 | r | 5498801 | 5503314 | DEAD 1; Helicase_C | ||||
| 2.6 | 80 | jgi|Poptr1_1|819597|estExt_fgenesh4_pg.C_LG_VI1784 | UAP56 | ptUAP56-2 | 6 | r | 17138147 | 17143156 | DEAD 1; Helicase_C | ||||
| 2.6 | 227 | jgi|Poptr1_1|198513|gw1.IV.3602.1 | ALY | ptALY-2a-1 | 4 | f | 6823569 | 6826436 | RRM 1 | ||||
| 2.6 | 227 | jgi|Poptr1_1|756063|fgenesh4_pg.C_LG_II002243 | ALY | ptALY-2a-2 | 2 | r | 21171589 | 21174991 | RRM 1 | ||||
| 2.6 | 342 | jgi|Poptr1_1|172546|gw1.I.1146.1 | Srm160-like | ptSRM102-1 | 1 | r | 17298054 | 17298988 | PWI 1 | ||||
| 2.6 | 342 | jgi|Poptr1_1|203587|gw1.IX.4052.1 | Srm160-like | ptSRM102-2 | 9 | r | 8294206 | 8295174 | PWI 1 | ||||
| 2.6 | 345 | jgi|Poptr1_1|823076|estExt_fgenesh4_pg.C_LG_XI1221 | RNPS1 | ptSR45/ptRNPS1 | 11 | r | 13693674 | 13698833 | RRM 1 | ||||
| 2.6 | 348 | jgi|Poptr1_1|551963|eugene3.00021278 | Magoh | ptMagoh-1 | 2 | f | 10333585 | 10335255 | Mago_nashi 1 | ||||
| 2.6 | 348 | jgi|Poptr1_1|740188|estExt_Genewise1_v1.C_400263 | Magoh | ptMagoh-2 | 40 | r | 786057 | 787906 | Mago_nashi 1 | ||||
| 2.6 | 417 | jgi|Poptr1_1|207980|gw1.V.3381.1 | Nuk-34/eIF4A3/DDX48 | ptDDX48/eIF4A3-1a | 5 | f | 2738018 | 2742542 | DEAD 1; Helicase_C | ||||
| 2.6 | 417 | jgi|Poptr1_1|832316|estExt_fgenesh4_pm.C_LG_VII0278 | Nuk-34/eIF4A3/DDX48 | ptDDX48/eIF4A3-1b | 7 | r | 6472389 | 6476775 | DEAD 1; Helicase_C | ||||
| 2.6 | 480 | jgi|Poptr1_1|172155|gw1.I.755.1 | Y14 | ptY14-1 | 1 | r | 16361729 | 16363828 | RRM 1; RBMB 4 | ||||
| 2.6 | 480 | jgi|Poptr1_1|203151|gw1.IX.3616.1 | Y14 | ptY14-2 | 9 | r | 7332514 | 7334867 | RRM 1; RBMB 4 | ||||
| 2.6 | 650 | jgi|Poptr1_1|181346|gw1.I.9946.1 | pinin | ptPinin-1 | 1 | f | 11856664 | 11861151 | Pinin/SDK/memA 1 | ||||
| 2.6 | 650 | jgi|Poptr1_1|415184|gw1.III.2287.1 | pinin | ptPinin-2 | 3 | f | 1124398 | 1129268 | Pinin/SDK/memA 1 | ||||
| 2.7 | 13 | jgi|Poptr1_1|569452|eugene3.00120105 | Prp22 | Prp22 | ptPrp22 | 12 | r | 898018 | 902346 | DEAD 1; Helicase_C | |||
| 2.7 | 13 | jgi|Poptr1_1|586590|eugene3.01970032 | Prp22 | Prp22 | ptPrp22 | 197 | f | 313018 | 317433 | DEAD 1; Helicase_C | |||
| 2.7 | 415 | jgi|Poptr1_1|559562|eugene3.00051177 | Prp18 | Prp18 | ptPrp18-1 | 5 | r | 14547846 | 14549816 | Prp18 1; SFM 1 | |||
| 2.7 | 416 | jgi|Poptr1_1|229948|gw1.X.4645.1 | Prp18 | Prp18 | ptPrp17-1a | 10 | r | 5486258 | 5487811 | WD-40 7; | |||
| 2.7 | 416 | jgi|Poptr1_1|565006|eugene3.00081601 | Prp18 | Prp18 | ptPrp17-1b | 8 | r | 11638047 | 11640386 | WD-40 7; | |||
| 2.7 | 551 | jgi|Poptr1_1|574877|eugene3.00150272 | Slu7 | Slu7p | ptSLU7-1a-1 | 15 | r | 2430335 | 2434404 | ||||
| 2.7 | 551 | jgi|Poptr1_1|772815|fgenesh4_pg.C_LG_XII000590 | Slu7 | Slu7p | ptSLU7-1a-2 | 12 | r | 6934816 | 6938829 | ||||
| 2.7 | 747 | jgi|Poptr1_1|730261|estExt_Genewise1_v1.C_LG_XIII2644 | Prp17 | Prp17p | ptPrp17 | WD-40 6 | |||||||
| 2.7 | 1102 | jgi|Poptr1_1|804866|fgenesh4_pm.C_LG_X000172 | Prp22 | Prp22 | ptPrp22-3 | 10 | f | 6033600 | 6043461 | DEAD 1;Helicase_C | |||
| 2.7 | 1103 | jgi|Poptr1_1|421406|gw1.VIII.2834.1 | Prp22 | Prp22 | ptPrp22-2 | 8 | f | 6015525 | 6021125 | DEAD 1;Helicase_C | |||
| 2.8 | 13 | jgi|Poptr1_1|250837|gw1.XV.273.1 | Prp2 | ptPrp2 | 15 | f | 588737 | 607440 | DEAD 1; Helicase_C | ||||
| 2.8 | 13 | jgi|Poptr1_1|659337|grail3.0154005801 | Prp2 | ptPrp2-1a | 10 | r | 15638571 | 15640070 | DEAD 1; Helicase_C | ||||
| 2.8 | 293 | jgi|Poptr1_1|752830|fgenesh4_pg.C_LG_I002433 | SRm300 | ptSRM300like-1 | 1 | r | 25062486 | 25069242 | RRM 1; Filamin/ABP28 | ||||
| 2.8 | 293 | jgi|Poptr1_1|827541|estExt_fgenesh4_pg.C_880014 | SRm300 | ptSRM300like-2 | 88 | f | 161579 | 165721 | RRM 1; Filamin/ABP28 | ||||
| 2.8 | 296 | jgi|Poptr1_1|411630|gw1.II.2965.1 | Prp5 | ptPrp5-1a-1 | 2 | r | 209205 | 212546 | DEAD 1; Helicase_C | ||||
| 2.8 | 296 | jgi|Poptr1_1|715705|estExt_Genewise1_v1.C_LG_V2253 | Prp5 | ptPrp5-1a-2 | 5 | f | 17779741 | 17782428 | DEAD 1; Helicase_C | ||||
| 2.8 | 478 | jgi|Poptr1_1|833248|estExt_fgenesh4_pm.C_LG_IX0568 | hTra-2/SFRS10 | ptTra/SFRS1 | 9 | r | 8010728 | 8012506 | RRM 1 | ||||
| 2.8 | 754 | jgi|Poptr1_1|552542|eugene3.00021857 | Prp5 | ptPrp5 | 2 | r | 16194122 | 16198576 | DEAD 1;Helicase_C | ||||
| 2.8 | 979 | jgi|Poptr1_1|825797|estExt_fgenesh4_pg.C_LG_XVIII0523 | hDbr1 | dbr1 | ptDbr1 | Metallophos 1;DBRI |
3. Splicing regulation
Group |
CIWOG |
Gene |
hHomologs |
SeHomologs |
Gene Name |
Chr |
str |
from |
to |
Txn |
Domains |
Transcripts |
|
| 3.1 | 71 | jgi|Poptr1_1|423025|gw1.XII.1485.1 | Lammer/CLK | kinase | ptAFC1/ptAFC2 | 12 | r | 10756166 | 10759468 | Pkinase 1; TyrKc 1 | |||
| 3.1 | 71 | jgi|Poptr1_1|576599|eugene3.00160734 | Lammer/CLK | kinase | ptAFC1/ptAFC2 | 16 | f | 6005194 | 6009019 | Pkinase 1; TyrKc 1 | |||
| 3.1 | 71 | jgi|Poptr1_1|802264|fgenesh4_pm.C_LG_VI000611 | Lammer/CLK | kinase | ptAFC1/ptAFC2 | 6 | f | 14062346 | 14066002 | Pkinase 1; TyrKc 1 | |||
| 3.1 | 71 | jgi|Poptr1_1|821865|estExt_fgenesh4_pg.C_LG_X0554 | Lammer/CLK | kinase | ptAFC1/ptAFC2 | 10 | f | 6739614 | 6743226 | Pkinase 1; TyrKc 1 | |||
| 3.1 | 71 | jgi|Poptr1_1|824707|estExt_fgenesh4_pg.C_LG_XV0599 | Lammer/CLK | kinase | ptAFC1/ptAFC2 | 15 | r | 6434935 | 6438181 | Pkinase 1; TyrKc 1 | |||
| 3.1 | 135 | jgi|Poptr1_1|282386|gw1.28.960.1 | Kinase | SRPK2 | ptSRPK2a-1 | 28 | r | 2959345 | 2964106 | Pkinase 1; TyrKc 1 | |||
| 3.1 | 135 | jgi|Poptr1_1|556921|eugene3.00090181 | Kinase | SRPK2 | ptSRPK2a-2 | 9 | f | 1040739 | 1043005 | Pkinase 1; TyrKc 1 | |||
| 3.1 | 135 | jgi|Poptr1_1|782432|fgenesh4_pg.C_scaffold_66000047 | Kinase | SRPK2 | ptSRPK2a-3 | 66 | r | 426503 | 429348 | Pkinase 1; TyrKc 1 | |||
| 3.1 | 209 | jgi|Poptr1_1|586007|eugene3.01860014 | Kinase | SRPK1 | ptSRPK1a-1 | 186 | r | 148939 | 152634 | Pkinase 1; TyrKc 1 | |||
| 3.1 | 209 | jgi|Poptr1_1|760368|fgenesh4_pg.C_LG_V000420 | Kinase | SRPK1 | ptSRPK1a-2 | 5 | r | 3528977 | 3531823 | Pkinase 1; TyrKc 1 | |||
| 3.1 | 290 | jgi|Poptr1_1|417697|gw1.VI.2070.1 | Kinase | Lammer/CLK_kinase | ptAFC3 | 6 | f | 16534648 | 16538295 | Pkinase 1;TyrKc 1;S | |||
| 3.2 | 45 | jgi|Poptr1_1|296498|gw1.82.38.1 | Glycine-Rich_RBD | ptGRBP1d/GRBP1c/GRBP1e-1 | 82 | r | 246572 | 247558 | RRM 1 | ||||
| 3.2 | 45 | jgi|Poptr1_1|421559|gw1.XII.19.1 | Glycine-Rich_RBD | ptGRBP1d/GRBP1c/GRBP1e-2 | 12 | r | 5798177 | 5799155 | RRM 1 | ||||
| 3.2 | 45 | jgi|Poptr1_1|679310|grail3.5873000103 | Glycine-Rich_RBD | ptGRBP1d/GRBP1c/GRBP1e-3 | 5873 | r | 865 | 1694 | RRM 1 | ||||
| 3.2 | 45 | jgi|Poptr1_1|707174|estExt_Genewise1_v1.C_LG_I3371 | Glycine-Rich_RBD | ptGRBP1d/GRBP1c/GRBP1e-4 | 1 | r | 24983920 | 24985162 | RRM 1 | ||||
| 3.2 | 45 | jgi|Poptr1_1|836867|estExt_fgenesh4_pm.C_880007 | Glycine-Rich_RBD | ptGRBP1d/GRBP1c/GRBP1e-5 | 88 | r | 231343 | 232555 | RRM 1 | ||||
| 3.2 | 109 | jgi|Poptr1_1|201330|gw1.IX.1795.1 | Glycine-Rich_RBD | ptGRP7/ptGRBP3a | 9 | r | 3104731 | 3105365 | RRM 1 | ||||
| 3.2 | 109 | jgi|Poptr1_1|712972|estExt_Genewise1_v1.C_LG_IV0527 | Glycine-Rich_RBD | ptGRP7/ptGRBP3a | 4 | f | 14444246 | 14444994 | RRM 1 | ||||
| 3.3 | 29 | jgi|Poptr1_1|264910|gw1.119.33.1 | hnRNP_A/B | PtRNPA/B-1 | 119 | f | 488398 | 490115 | RRM 2 | ||||
| 3.3 | 29 | jgi|Poptr1_1|269887|gw1.13888.4.1 | hnRNP_A/B | PtRNPA/B-2 | 13888 | f | 391 | 1039 | RRM 2 | ||||
| 3.3 | 29 | jgi|Poptr1_1|289077|gw1.44.290.1 | hnRNP_A/B | PtRNPA/B-3 | 44 | r | 1487724 | 1489548 | RRM 2 | ||||
| 3.3 | 29 | jgi|Poptr1_1|550162|eugene3.00012603 | hnRNP_A/B | PtRNPA/B-4 | 1 | r | 29328146 | 29330829 | RRM 2 | ||||
| 3.3 | 29 | jgi|Poptr1_1|552695|eugene3.00002010 | hnRNP_A/B | PtRNPA/B-5 | 2 | f | 18334297 | 18336093 | RRM 2 | ||||
| 3.3 | 29 | jgi|Poptr1_1|568529|eugene3.00110543 | hnRNP_A/B | PtRNPA/B-6 | 11 | f | 6370694 | 6373347 | RRM 2 | ||||
| 3.3 | 29 | jgi|Poptr1_1|834962|estExt_fgenesh4_pm.C_LG_XIV0454 | hnRNP_A/B | PtRNPA/B-7 | 14 | f | 8800197 | 8805059 | RRM 2 | ||||
| 3.3 | 149 | jgi|Poptr1_1|560285|eugene3.00060244 | hnRNP_A/B | ptUBA2a-1 | 6 | f | 1677680 | 1679104 | RRM 2 | ||||
| 3.3 | 149 | jgi|Poptr1_1|835360|estExt_fgenesh4_pm.C_LG_XVI0055 | hnRNP_A/B | ptUBA2a-2 | 16 | f | 1218580 | 1220013 | RRM 2 | ||||
| 3.3 | 257 | jgi|Poptr1_1|176403|gw1.I.5003.1 | hnRNP_A/B | ptUBA2c | 1 | r | 30999275 | 31000402 | RRM 2 | ||||
| 3.3 | 418 | jgi|Poptr1_1|229873|gw1.X.4570.1 | hnRNP_A/B | ptRNPA/B_1a | 10 | r | 5293873 | 5295875 | RRM 2 | ||||
| 3.3 | 418 | jgi|Poptr1_1|421117|gw1.VIII.2545.1 | hnRNP_A/B | ptRNPA/B_1b | 8 | r | 11503326 | 11505260 | RRM 2 | ||||
| 3.3 | 655 | jgi|Poptr1_1|176264|gw1.I.4864.1 | hnRNP_A/B | ptRNP_N1 | 1 | r | 30162355 | 30163760 | RRM 2;HUDSXLRNA 2 | ||||
| 3.3 | 1098 | jgi|Poptr1_1|173980|gw1.I.2580.1 | hnRNP_A/B | ptRNPA/B_8a | 1 | f | 22069804 | 22071176 | RRM 2; Eggshell 4 | ||||
| 3.3 | 1500 | jgi|Poptr1_1|572005|eugene3.00140050 | hnRNP_A/B | ptAtRNPA/B | 14 | r | 393612 | 395395 | RRM 2 | ||||
| 3.4 | 93 | jgi|Poptr1_1|219589|gw1.VII.3894.1 | hnRNP_R/Q | hnRNP-R3/ptPA/B-1 | 7 | r | 11624707 | 11626129 | RRM 3 | ||||
| 3.4 | 93 | jgi|Poptr1_1|286468|gw1.40.228.1 | hnRNP_R/Q | hnRNP-R3/ptPA/B-2 | 40 | f | 671497 | 673376 | RRM 3 | ||||
| 3.4 | 93 | jgi|Poptr1_1|412314|gw1.II.3649.1 | hnRNP_R/Q | hnRNP-R3/ptPA/B-3 | 2 | r | 10402133 | 10403986 | RRM 3 | ||||
| 3.4 | 93 | jgi|Poptr1_1|741275|estExt_Genewise1_v1.C_570276 | hnRNP_R/Q | hnRNP-R3/ptPA/B-4 | 57 | f | 925314 | 926739 | RRM 3 | ||||
| 3.4 | 120 | jgi|Poptr1_1|199846|gw1.IX.311.1 | hnRNP_R/Q | pt-hnRNP-R2a | 9 | r | 425580 | 428029 | RRM 3 | ||||
| 3.4 | 120 | jgi|Poptr1_1|256575|gw1.XVI.2514.1 | hnRNP_R/Q | pt-hnRNP-R2b | 16 | f | 5901006 | 5903782 | RRM 3 | ||||
| 3.4 | 120 | jgi|Poptr1_1|293793|gw1.66.466.1 | hnRNP_R/Q | pt-hnRNP-R2c | 66 | f | 1119263 | 1122377 | RRM 3 | ||||
| 3.4 | 120 | jgi|Poptr1_1|717692|estExt_Genewise1_v1.C_LG_VI2287 | hnRNP_R/Q | pt-hnRNP-R2d | 6 | f | 14002986 | 14006458 | RRM 3 | ||||
| 3.4 | 179 | jgi|Poptr1_1|245147|gw1.XIV.1890.1 | hnRNP_R/Q | pt-hnRNP-R1 | 14 | r | 4003106 | 4006958 | RRM 3 | ||||
| 3.4 | 183 | jgi|Poptr1_1|246020|gw1.XIV.2763.1 | CUG-BP | ptCUG-BP1-1 | 14 | f | 6374059 | 6377936 | RRM 3; HUDSXLRNA 4 | ||||
| 3.4 | 183 | jgi|Poptr1_1|799273|fgenesh4_pm.C_LG_II000962 | CUG-BP | ptCUG-BP1-2 | 2 | r | 17531440 | 17535229 | RRM 3; HUDSXLRNA 4 | ||||
| 3.4 | 337 | jgi|Poptr1_1|225956|gw1.X.653.1 | _ | ptFCA1 | 10 | r | 14035463 | 14041983 | RRM 2; WW 1 | ||||
| 3.4 | 350 | jgi|Poptr1_1|171415|gw1.I.15.1 | hnRNP_G | pt-hnRNP-G2 | 1 | r | 11966373 | 11967035 | RRM 1; CCHC 1 | ||||
| 3.4 | 555 | jgi|Poptr1_1|226485|gw1.X.1182.1 | hnRNP_P2 | pt-hnRNP-P-1 | 10 | f | 15525792 | 15528916 | RRM 1; ZnF_RBZ 2 | ||||
| 3.4 | 555 | jgi|Poptr1_1|564190|eugene3.00080785 | hnRNP_P2 | pt-hnRNP-P-2 | 8 | f | 5313619 | 5316482 | RRM 1; ZnF_RBZ 2 | ||||
| 3.4 | 639 | jgi|Poptr1_1|729865|estExt_Genewise1_v1.C_LG_XIII1582 | hnRNP_E1/E2 | pt-hnRNP-E | KH 3 | ||||||||
| 3.4 | 746 | jgi|Poptr1_1|650984|grail3.0026035501 | hnRNP_F/hnRNP_H | pt-hnRNP-F/AtRNPH/F_ | 5 | r | 3447647 | 3448420 | RRM 2 | ||||
| 3.4 | 867 | jgi|Poptr1_1|755673|fgenesh4_pg.C_LG_II001853 | _ | ptFCA2 | 2 | r | 16361283 | 16367855 | RRM 2; WW 1 | ||||
| 3.4 | 869 | jgi|Poptr1_1|725079|estExt_Genewise1_v1.C_LG_X2845 | _ | hnRNP_G | 10 | f | 19484223 | 19488722 | RRM 1; CCHC 1 | ||||
| 3.4 | 980 | jgi|Poptr1_1|172927|gw1.I.1527.1 | hnRNP_F/hnRNP_H | pt-hnRNP-H1 | 1 | r | 18683976 | 18684734 | RRM 2 | ||||
| 3.4 | 980 | jgi|Poptr1_1|821449|estExt_fgenesh4_pg.C_LG_IX1049 | hnRNP_F/hnRNP_H | pt-hnRNP-H2 | 9 | f | 7170574 | 7172449 | RRM 2 | ||||
| 3.5 | 107 | jgi|Poptr1_1|286517|gw1.40.277.1 | hnRNP-like_5 | ptAth1 | 40 | r | 800736 | 802807 | HANP4_PAI-RBP! 1 | ||||
| 3.5 | 107 | jgi|Poptr1_1|830328|estExt_fgenesh4_pm.C_LG_II0615 | hnRNP-like_5 | ptAth2 | 2 | f | 10322201 | 10325012 | HANP4_PAI-RBP! 1 | ||||
| 3.5 | 107 | jgi|Poptr1_1|830730|estExt_fgenesh4_pm.C_LG_III0192 | hnRNP-like_5 | ptAth3 | 3 | f | 7619015 | 7622554 | HANP4_PAI-RBP! 1 | ||||
| 3.5 | 107 | jgi|Poptr1_1|836308|estExt_fgenesh4_pm.C_290040 | hnRNP-like_5 | ptAth4 | 29 | f | 979191 | 982581 | HANP4_PAI-RBP! 1 | ||||
| 3.5 | 137 | jgi|Poptr1_1|281598|gw1.28.172.1 | hnRNP-like_1 | ptUBP1b-1 | 28 | f | 583635 | 588022 | RRM 3 | ||||
| 3.5 | 137 | jgi|Poptr1_1|645804|grail3.0037000401 | hnRNP-like_1 | ptUBP1b-2 | 3 | r | 3376236 | 3381068 | RRM 3 | ||||
| 3.5 | 137 | jgi|Poptr1_1|673211|grail3.0158002202 | hnRNP-like_1 | ptUBP1b-3 | 158 | f | 246951 | 251811 | RRM 3 | ||||
| 3.5 | 146 | jgi|Poptr1_1|663393|grail3.0055015001 | hnRNP-like_3 | ptRBP45a-1 | 13 | f | 8146613 | 8151027 | RRM 3 | ||||
| 3.5 | 146 | jgi|Poptr1_1|713522|estExt_Genewise1_v1.C_LG_IV1715 | hnRNP-like_3 | ptRBP45a-2 | 4 | r | 485791 | 490307 | RRM 3 | ||||
| 3.5 | 146 | jgi|Poptr1_1|727110|estExt_Genewise1_v1.C_LG_XI0522 | hnRNP-like_3 | ptRBP45a-3 | 11 | f | 13382004 | 13386943 | RRM 3 | ||||
| 3.5 | 410 | jgi|Poptr1_1|286862|gw1.40.622.1 | hnRNP-like_4 | ptRBP47c-1 | 40 | r | 1790126 | 1793346 | RRM 3 | ||||
| 3.5 | 410 | jgi|Poptr1_1|798901|fgenesh4_pm.C_LG_II000590 | hnRNP-like_4 | ptRBP47c-2 | 2 | r | 9632326 | 9634926 | RRM 3 | ||||
| 3.5 | 636 | jgi|Poptr1_1|203044|gw1.IX.3509.1 | hnRNP-like_3 | ptRBP45d | 9 | f | 7094929 | 7097093 | RRM 3 | ||||
| 3.5 | 870 | jgi|Poptr1_1|744254|estExt_Genewise1_v1.C_1300118 | hnRNP-like_4 | ptRBP47a-1 | 130 | r | 432560 | 436975 | RRM 3 | ||||
| 3.5 | 870 | jgi|Poptr1_1|767539|fgenesh4_pg.C_LG_IX000590 | hnRNP-like_4 | ptRBP47a-2 | 9 | r | 3728527 | 3732800 | RRM 3 |
4. Novel spliceosome proteins
Group |
CIWOG |
Gene |
hHomologs |
SeHomologs |
Gene Name |
Chr |
str |
from |
to |
Txn |
Domains |
Transcripts |
|
| 4.1 | 148 | jgi|Poptr1_1|720028|estExt_Genewise1_v1.C_LG_VIII0460 | eIF3 | sub2 | pt-eIF3sub2a-1 | WD40 4 | |||||||
| 4.1 | 148 | jgi|Poptr1_1|833555|estExt_fgenesh4_pm.C_LG_X0377 | eIF3 | sub2 | pt-eIF3sub2a-2 | 10 | r | 10572496 | 10576013 | WD40 4 | |||
| 4.1 | 206 | jgi|Poptr1_1|249114|gw1.XIX.1514.1 | hTHO2 | ptTHO2-1 | 19 | f | 7296072 | 7322846 | Tho2 | ||||
| 4.1 | 206 | jgi|Poptr1_1|813521|fgenesh4_pm.C_scaffold_87000014 | hTHO2 | ptTHO2-2 | 87 | f | 583046 | 612168 | Tho2 | ||||
| 4.1 | 254 | jgi|Poptr1_1|836447|estExt_fgenesh4_pm.C_400112 | KIAA0983 | ptKIAA0983-1 | 40 | r | 2182077 | 2185275 | Fimp 1 | ||||
| 4.1 | 291 | jgi|Poptr1_1|576239|eugene3.00160374 | eIF3_sub6 | pt-eIF3sub6-1 | 16 | f | 2689914 | 2693185 | |||||
| 4.1 | 291 | jgi|Poptr1_1|652677|grail3.0024032201 | eIF3_sub6 | pt-eIF3sub6-2 | 6 | f | 3121587 | 3125353 | |||||
| 4.1 | 335 | jgi|Poptr1_1|560229|eugene3.00060188 | C21orf66 | ptC21orf66-1 | 6 | f | 1357111 | 1357569 | |||||
| 4.1 | 335 | jgi|Poptr1_1|563415|eugene3.00080010 | C21orf66 | ptC21orf66-2 | 8 | r | 62134 | 63516 | |||||
| 4.1 | 335 | jgi|Poptr1_1|563417|eugene3.00080012 | C21orf66 | ptC21orf66-3 | 8 | r | 66137 | 67808 | |||||
| 4.1 | 335 | jgi|Poptr1_1|761867|fgenesh4_pg.C_LG_VI000177 | C21orf66 | ptC21orf66-4 | 6 | f | 1342131 | 1344747 | |||||
| 4.1 | 400 | jgi|Poptr1_1|178378|gw1.I.6978.1 | hHPR1 | ptHPR1-1 | 1 | r | 1735605 | 1745271 | |||||
| 4.1 | 400 | jgi|Poptr1_1|414862|gw1.III.1965.1 | hHPR1 | ptHPR1-2 | 3 | f | 17609691 | 17618926 | |||||
| 4.1 | 483 | jgi|Poptr1_1|567434|eugene3.00101992 | HsKin17 | Rts2p | ptKin17-1 | 10 | r | 17949807 | 17951009 | ||||
| 4.1 | 483 | jgi|Poptr1_1|832545|estExt_fgenesh4_pm.C_LG_VIII0198 | HsKin17 | Rts2p | ptKin17-2 | 8 | f | 3041251 | 3042441 | ||||
| 4.1 | 541 | jgi|Poptr1_1|422416|gw1.XII.876.1 | CF_I-25kD | ptCFI-25kD-1 | 12 | r | 12896992 | 12899767 | |||||
| 4.1 | 541 | jgi|Poptr1_1|734153|estExt_Genewise1_v1.C_LG_XV3300 | CF_I-25kD | ptCFI-25kD-2 | 15 | f | 10255926 | 10258574 | |||||
| 4.1 | 976 | jgi|Poptr1_1|422815|gw1.XII.1275.1 | CPSF_160K | ptCPSF-160k | 12 | r | 2476178 | 2494323 | |||||
| 4.1 | 1205 | jgi|Poptr1_1|819254|estExt_fgenesh4_pg.C_LG_VI0927 | CF_I-25kD | ptCFI-25kD | 6 | f | 8205696 | 8207786 | |||||
| 4.2 | 32 | jgi|Poptr1_1|205083|gw1.V.484.1 | PAB1/PAB2 | ptPABP1/ptPAB1-1 | 5 | r | 13536804 | 13540664 | RRM 4 | ||||
| 4.2 | 32 | jgi|Poptr1_1|205089|gw1.V.490.1 | PAB1/PAB2 | ptPABP1/ptPAB1-2 | 5 | r | 13545744 | 13549568 | RRM 4 | ||||
| 4.2 | 32 | jgi|Poptr1_1|287102|gw1.40.862.1 | PAB1/PAB2 | ptPABP1/ptPAB1-3 | 40 | r | 2366748 | 2372408 | RRM 4 | ||||
| 4.2 | 32 | jgi|Poptr1_1|557410|eugene3.00090670 | PAB1/PAB2 | ptPABP1/ptPAB1-4 | 9 | r | 4083187 | 4086853 | RRM 4 | ||||
| 4.2 | 32 | jgi|Poptr1_1|815675|estExt_fgenesh4_pg.C_LG_I2562 | PAB1/PAB2 | ptPABP1/ptPAB1-5 | 1 | r | 26463669 | 26467877 | RRM 4 | ||||
| 4.2 | 32 | jgi|Poptr1_1|816198|estExt_fgenesh4_pg.C_LG_II0583 | PAB1/PAB2 | ptPABP1/ptPAB1-6 | 2 | f | 4214425 | 4218517 | RRM 4 | ||||
| 4.2 | 32 | jgi|Poptr1_1|816470|estExt_fgenesh4_pg.C_LG_II1125 | PAB1/PAB2 | ptPABP1/ptPAB1-7 | 2 | f | 9370578 | 9377393 | RRM 4 | ||||
| 4.2 | 2282 | jgi|Poptr1_1|171859|gw1.I.459.1 | PAB1/PAB2 | ptPAB1/ptPAB2 | 1 | r | 14558886 | 14560903 | |||||
| 4.3 | 69 | jgi|Poptr1_1|173906|gw1.I.2506.1 | p72 | p72-4/p72-3/p72-5 | 1 | r | 21772568 | 21777443 | DEAD 1; Helicase_C | ||||
| 4.3 | 69 | jgi|Poptr1_1|226049|gw1.X.746.1 | p72 | p72-4/p72-3/p72-5 | 10 | r | 14356023 | 14360791 | DEAD 1; Helicase_C | ||||
| 4.3 | 69 | jgi|Poptr1_1|258671|gw1.XVII.662.1 | p72 | p72-4/p72-3/p72-5 | 17 | r | 2800640 | 2805993 | DEAD 1; Helicase_C | ||||
| 4.3 | 100 | jgi|Poptr1_1|252279|gw1.XV.1715.1 | p72 | p72-1 | 15 | r | 6251748 | 6254814 | DEAD 1; Helicase 1 | ||||
| 4.3 | 100 | jgi|Poptr1_1|773054|fgenesh4_pg.C_LG_XII000829 | p72 | p72-2 | 12 | r | 10320605 | 10324735 | DEAD 1; Helicase 1 | ||||
| 4.3 | 100 | jgi|Poptr1_1|826955|estExt_fgenesh4_pg.C_440087 | p72 | p72-3 | 44 | r | 1069391 | 1076588 | DEAD 1; Helicase 1 | ||||
| 4.3 | 136 | jgi|Poptr1_1|274323|gw1.164.165.1 | KIAA0052 | ptKIAA0052a-1 | 164 | r | 434679 | 442226 | DEAD 1; DSHCT 1; H | ||||
| 4.3 | 136 | jgi|Poptr1_1|297279|gw1.86.170.1 | KIAA0052 | ptKIAA0052a-2 | 86 | f | 559848 | 569534 | DEAD 1; DSHCT 1; H | ||||
| 4.3 | 136 | jgi|Poptr1_1|819128|estExt_fgenesh4_pg.C_LG_VI0599 | KIAA0052 | ptKIAA0052a-3 | 6 | f | 5138017 | 5145292 | DEAD 1; DSHCT 1; H | ||||
| 4.3 | 339 | jgi|Poptr1_1|589531|eugene3.00280267 | hDbp5 | Dbp5p | ptDbp5 | 28 | r | 2838645 | 2844223 | ||||
| 4.3 | 462 | jgi|Poptr1_1|294891|gw1.70.344.1 | Abstrakt | (Ded1p) | ptAbstrakt-a1 | 70 | f | 789037 | 790858 | ||||
| 4.3 | 462 | jgi|Poptr1_1|810609|fgenesh4_pm.C_scaffold_86000007 | Abstrakt | (Ded1p) | ptAbstrakt-a2 | 86 | f | 264400 | 267040 | ||||
| 4.3 | 654 | jgi|Poptr1_1|831104|estExt_fgenesh4_pm.C_LG_IV0154 | DDX35 | ptDDX35 | 4 | r | 4117419 | 4127832 | |||||
| 4.4 | 404 | jgi|Poptr1_1|293354|gw1.66.27.1 | KIAA0073 | ptKIA0073-1 | 66 | r | 113265 | 117265 | |||||
| 4.4 | 404 | jgi|Poptr1_1|721509|estExt_Genewise1_v1.C_LG_IX0757 | KIAA0073 | ptKIA0073-2 | 9 | f | 1374340 | 1380301 | |||||
| 4.4 | 652 | jgi|Poptr1_1|709764|estExt_Genewise1_v1.C_LG_II0068 | PPIase-like_3 | ptPPIL3-1 | 2 | r | 11179366 | 11180899 | |||||
| 4.4 | 652 | jgi|Poptr1_1|730904|estExt_Genewise1_v1.C_LG_XIV0848 | PPIase-like_3 | ptPPIL3-2 | 14 | r | 1563842 | 1565423 | |||||
| 4.4 | 745 | jgi|Poptr1_1|209043|gw1.V.4444.1 | Cyp-60 | ptCYP-60 | 5 | r | 6643073 | 6646888 | |||||
| 4.4 | 751 | jgi|Poptr1_1|668739|grail3.0103003701 | SDCCAG10 | ptSDCCAG10-1 | 18 | r | 985130 | 986846 | |||||
| 4.4 | 751 | jgi|Poptr1_1|802320|fgenesh4_pm.C_LG_VI000667 | SDCCAG10 | ptSDCCAG10-2 | 6 | r | 15058905 | 15062305 | |||||
| 4.5 | 54 | jgi|Poptr1_1|420612|gw1.VIII.2040.1 | CDCL2_p110 | ptCDCL2p110-1 | 8 | r | 12019024 | 12022136 | Pkinase_Tyr 1; Pkin | ||||
| 4.5 | 54 | jgi|Poptr1_1|821837|estExt_fgenesh4_pg.C_LG_X0468 | CDCL2_p110 | - | ptCDCL2p110-1 | 10 | r | 6062273 | 6065713 | Pkinase_Tyr 1; Pkin | |||
| 4.5 | 70 | jgi|Poptr1_1|215702|gw1.VII.7.1 | RNPC2 | ptNPC2a/ptNPC2b | 7 | f | 11906894 | 11915334 | RRM 2 | ||||
| 4.5 | 70 | jgi|Poptr1_1|648812|grail3.0045020701 | RNPC2 | ptNPC2a/ptNPC2b | 4 | r | 15994415 | 15997365 | RRM 2 | ||||
| 4.5 | 70 | jgi|Poptr1_1|716366|estExt_Genewise1_v1.C_LG_V4376 | RNPC2 | ptNPC2a/ptNPC2b | 5 | f | 6456201 | 6463900 | RRM 2 | ||||
| 4.5 | 99 | jgi|Poptr1_1|194999|gw1.IV.88.1 | IMP3 | ptIMP3/KOC-1 | 4 | f | 12344223 | 12346714 | KH 4 | ||||
| 4.5 | 99 | jgi|Poptr1_1|778532|fgenesh4_pg.C_LG_XVII000411 | IMP3 | ptIMP3/KOC-2 | 17 | f | 4977017 | 4979527 | KH 4 | ||||
| 4.5 | 180 | jgi|Poptr1_1|289113|gw1.44.326.1 | RBM5 | ptRBM5-1 | 44 | r | 1713149 | 1721263 | G-patch 1; RRM 2; | ||||
| 4.5 | 180 | jgi|Poptr1_1|800597|fgenesh4_pm.C_LG_IV000284 | RBM5 | ptRBM5-2 | 4 | r | 7360760 | 7370841 | G-patch 1; RRM 2; | ||||
| 4.5 | 184 | jgi|Poptr1_1|241881|gw1.XIII.2130.1 | PMSCL2 | ptPMSCL2-1a | 13 | f | 4644261 | 4653653 | 3_5_exonuc 1; HRDC | ||||
| 4.5 | 184 | jgi|Poptr1_1|248751|gw1.XIX.1151.1 | PMSCL2 | ptPMSCL2-1b | 19 | f | 5578034 | 5587242 | 3_5_exonuc 1; HRDC | ||||
| 4.5 | 207 | jgi|Poptr1_1|209784|gw1.V.5185.1 | DKFZP586O0120 | ptDKFZP586O0120-1 | 5 | f | 11135270 | 11136738 | DUF1754 1 | ||||
| 4.5 | 207 | jgi|Poptr1_1|660030|grail3.0106002601 | DKFZP586O0120 | ptDKFZP586O0120-2 | 10 | r | 20120098 | 20120382 | DUF1754 1 | ||||
| 4.5 | 261 | jgi|Poptr1_1|574969|eugene3.00150364 | RACK1 | Asc1p | ptRACK1a-1 | 15 | f | 3524663 | 3526446 | WD40 5 | |||
| 4.5 | 261 | jgi|Poptr1_1|834267|estExt_fgenesh4_pm.C_LG_XII0164 | RACK1 | Asc1p | ptRACK1a-2 | 12 | r | 4158400 | 4160101 | WD40 5 | |||
| 4.5 | 289 | jgi|Poptr1_1|558581|eugene3.00050196 | AcinusL | ptAcinusL-1 | 5 | f | 1655077 | 1658909 | SAP 1 | ||||
| 4.5 | 289 | jgi|Poptr1_1|718854|estExt_Genewise1_v1.C_LG_VII1973 | AcinusL | ptAcinusL-2 | 7 | f | 4433351 | 4437500 | SAP 1 | ||||
| 4.5 | 294 | jgi|Poptr1_1|823135|estExt_fgenesh4_pg.C_LG_XI1348 | hSmu-1/FLJ10805 | ptSmu-1 | 11 | r | 14696560 | 14702183 | |||||
| 4.5 | 334 | jgi|Poptr1_1|293726|gw1.66.399.1 | TIP-49 | Rvb1p | ptTIP49 | 66 | f | 960864 | 965115 | ||||
| 4.5 | 334 | jgi|Poptr1_1|556835|eugene3.00090095 | TIP-49 | Rvb1p | ptTIP49 | 9 | r | 550086 | 555162 | ||||
| 4.5 | 340 | jgi|Poptr1_1|563737|eugene3.00080332 | UBL5p | Hub1p | ptUBL5a-1 | 8 | r | 1980324 | 1980545 | ||||
| 4.5 | 340 | jgi|Poptr1_1|680026|grail3.0066020701 | UBL5p | Hub1p | ptUBL5a-2 | 66 | f | 1759846 | 1760067 | ||||
| 4.5 | 343 | jgi|Poptr1_1|577016|eugene3.00161151 | KIAA1604 | ptKIAA1604 | 16 | f | 11504647 | 11509821 | |||||
| 4.5 | 406 | jgi|Poptr1_1|564188|eugene3.00080783 | CA150 | ptCA150 | 8 | f | 5298255 | 5301796 | |||||
| 4.5 | 408 | jgi|Poptr1_1|552692|eugene3.00002007 | DGSI_protein | ptDGCR14-1 | 2 | f | 18306792 | 18308336 | |||||
| 4.5 | 408 | jgi|Poptr1_1|775129|fgenesh4_pg.C_LG_XIV001039 | DGSI_protein | ptDGCR14-2 | 14 | r | 9049627 | 9051177 | |||||
| 4.5 | 465 | jgi|Poptr1_1|173293|gw1.I.1893.1 | SF4/F23858 | ptSF4-1 | 1 | f | 19593961 | 19598480 | |||||
| 4.5 | 465 | jgi|Poptr1_1|821392|estExt_fgenesh4_pg.C_LG_IX0951 | SF4/F23858 | ptSF4-2 | 9 | r | 6408958 | 6413509 | |||||
| 4.5 | 473 | jgi|Poptr1_1|568327|eugene3.00110341 | NOSIP | ptNOSIP-1 | 11 | r | 3390273 | 3392530 | |||||
| 4.5 | 473 | jgi|Poptr1_1|800358|fgenesh4_pm.C_LG_IV000045 | NOSIP | ptNOSIP-2 | 4 | r | 1349189 | 1351342 | |||||
| 4.5 | 473 | jgi|Poptr1_1|829094|estExt_fgenesh4_pg.C_24050001 | NOSIP | ptNOSIP-3 | 2405 | r | 915 | 3116 | |||||
| 4.5 | 476 | jgi|Poptr1_1|574017|eugene3.00190491 | TFIP11/TIP39 | ptTFIP11/TIP39a | 19 | f | 6216057 | 6218129 | |||||
| 4.5 | 476 | jgi|Poptr1_1|807023|fgenesh4_pm.C_LG_XIII000323 | TFIP11/TIP39 | ptTFIP11/TIP39a | 13 | r | 6557083 | 6559779 | |||||
| 4.5 | 484 | jgi|Poptr1_1|257127|gw1.XVI.3066.1 | TIP-48 | ptRuvB/TIP48a-1 | 16 | r | 8530596 | 8533019 | |||||
| 4.5 | 484 | jgi|Poptr1_1|282331|gw1.28.905.1 | TIP-48 | ptRuvB/TIP48a-2 | 28 | f | 2849843 | 2852007 | |||||
| 4.5 | 544 | jgi|Poptr1_1|416424|gw1.VI.797.1 | PUF60 | ptCP33/PUF60like-1 | 6 | r | 10123939 | 10125598 | |||||
| 4.5 | 544 | jgi|Poptr1_1|576481|eugene3.00160616 | PUF60 | ptCP33/PUF60like-2 | 16 | f | 4750567 | 4752461 | |||||
| 4.5 | 552 | jgi|Poptr1_1|235497|gw1.XI.3477.1 | Ku70 | ptKu70 | 11 | r | 10124203 | 10135050 | |||||
| 4.5 | 554 | jgi|Poptr1_1|731318|estExt_Genewise1_v1.C_LG_XIV1660 | ZNF183 | ptZNF183a | 14 | r | 3401132 | 3402354 | |||||
| 4.5 | 556 | jgi|Poptr1_1|809557|fgenesh4_pm.C_LG_XIX000122 | MFAP1 | ptMFAP1a-1 | 19 | r | 5722634 | 5724882 | |||||
| 4.5 | 556 | jgi|Poptr1_1|834576|estExt_fgenesh4_pm.C_LG_XIII0270 | MFAP1 | ptMFAP1a-2 | 13 | r | 4911093 | 4913518 | |||||
| 4.5 | 633 | jgi|Poptr1_1|815667|estExt_fgenesh4_pg.C_LG_I2540 | MGC4238 | ptMORG1 | 1 | f | 26232222 | 26234416 | |||||
| 4.5 | 643 | jgi|Poptr1_1|409246|gw1.II.581.1 | PMSCL2 | ptPMSCL2-1 | 2 | f | 19526838 | 19527977 | |||||
| 4.5 | 643 | jgi|Poptr1_1|755903|fgenesh4_pg.C_LG_II002083 | PMSCL2 | ptPMSCL2-2 | 2 | f | 19533381 | 19534122 | |||||
| 4.5 | 644 | jgi|Poptr1_1|778660|fgenesh4_pg.C_LG_XVIII000028 | PMSCL2 | ptRED | 18 | r | 428535 | 433068 | |||||
| 4.5 | 646 | jgi|Poptr1_1|266119|gw1.123.141.1 | FLJ90157/DKFZp434E22 | ptPSP1-1 | 123 | f | 427975 | 432346 | |||||
| 4.5 | 646 | jgi|Poptr1_1|759262|fgenesh4_pg.C_LG_IV000890 | FLJ90157/DKFZp434E22 | ptPSP1-2 | 4 | r | 8622570 | 8628041 | |||||
| 4.5 | 649 | jgi|Poptr1_1|728081|estExt_Genewise1_v1.C_LG_XI3018 | FLJ10374 | ptCWF16-1 | 11 | r | 7544059 | 7547457 | |||||
| 4.5 | 651 | jgi|Poptr1_1|589536|eugene3.00280272 | Cactin | ptCactin | 28 | f | 2869495 | 2872822 | |||||
| 4.5 | 748 | jgi|Poptr1_1|574762|eugene3.00150157 | KIAA0853 | ptKIAA0853 | 15 | r | 1025004 | 1032171 | |||||
| 4.5 | 749 | jgi|Poptr1_1|557051|eugene3.00090311 | FLJ10634 | ptCAJ1/FLJ10634 | 9 | f | 1876058 | 1876984 | |||||
| 4.5 | 750 | jgi|Poptr1_1|569839|eugene3.00120492 | FLJ10206 | ptFLJ10206 | 12 | r | 5219459 | 5227024 | |||||
| 4.5 | 871 | jgi|Poptr1_1|264661|gw1.118.149.1 | MGC13125 | Cwc26p | ptMGC13125 | 118 | f | 540264 | 546059 | ||||
| 4.5 | 977 | jgi|Poptr1_1|821615|estExt_fgenesh4_pg.C_LG_IX1388 | SPF31 | ptSPF31/Jiv-1 | 9 | r | 10058090 | 10063697 | |||||
| 4.5 | 977 | jgi|Poptr1_1|829583|estExt_fgenesh4_pm.C_LG_I0582 | SPF31 | ptSPF31/Jiv-2 | 1 | r | 15514455 | 15520151 | |||||
| 4.5 | 1203 | jgi|Poptr1_1|554465|eugene3.00031098 | NuMA | ptCIP1/ptNuMA-1 | 3 | f | 12785594 | 12789615 | |||||
| 4.5 | 1203 | jgi|Poptr1_1|640386|grail3.0008039601 | NuMA | ptCIP1/ptNuMA-2 | 1 | r | 6880089 | 6883313 |
5. Possible splicing related proteins
Group |
CIWOG |
Gene |
hHomologs |
SeHomologs |
Gene Name |
Chr |
str |
from |
to |
Txn |
Domains |
Transcripts |
|
| 5.1 | 106 | jgi|Poptr1_1|424268|gw1.57.235.1 | Splicing_factor_like | ptSFL | 57 | f | 76462 | 77190 | RRM 1 | ||||
| 5.1 | 205 | jgi|Poptr1_1|825640|estExt_fgenesh4_pg.C_LG_XVIII0149 | Splicing_factor_like | - | ptSFL3 | KH_1 2 | |||||||
| 5.1 | 224 | jgi|Poptr1_1|205618|gw1.V.1019.1 | Splicing_factor_like | ptSFL6a-1 | 5 | f | 14977797 | 14981033 | Pro_isomerase 1 | ||||
| 5.1 | 224 | jgi|Poptr1_1|410986|gw1.II.2321.1 | Splicing_factor_like | ptSFL6a-2 | 2 | r | 3020689 | 3023822 | Pro_isomerase 1 | ||||
| 5.1 | 542 | jgi|Poptr1_1|665264|grail3.0085000302 | Splicing_factor_like | ptSFL6b-1 | 19 | r | 1623718 | 1624242 | |||||
| 5.1 | 542 | jgi|Poptr1_1|665273|grail3.0085001101 | Splicing_factor_like | ptSFL6b-2 | 19 | f | 1804108 | 1804632 | |||||
| 5.1 | 542 | jgi|Poptr1_1|836014|estExt_fgenesh4_pm.C_LG_XIX0027 | Splicing_factor_like | ptSFL6b | 19 | r | 1689657 | 1690181 | |||||
| 5.1 | 547 | jgi|Poptr1_1|653445|grail3.0030006601 | Splicing_factor_like | ptSFL5 | 6 | f | 10570531 | 10571680 | |||||
| 5.1 | 641 | jgi|Poptr1_1|240443|gw1.XIII.692.1 | Splicing_factor_like | ptSFL4 | 13 | r | 849590 | 852913 | |||||
| 5.2 | 121 | jgi|Poptr1_1|241019|gw1.XIII.1268.1 | DNA_binding_protein_ | ptDBP1a-1 | 13 | r | 2118438 | 2121376 | NOP5NT 1; NOSIC 1; | ||||
| 5.2 | 121 | jgi|Poptr1_1|294922|gw1.70.375.1 | DNA_binding_protein_ | ptDBP1a-2 | 70 | f | 890920 | 893863 | NOP5NT 1; NOSIC 1; | ||||
| 5.2 | 333 | jgi|Poptr1_1|821339|estExt_fgenesh4_pg.C_LG_IX0842 | RNA_binding_2 | ptRBD2b-1 | 9 | r | 5476280 | 5478802 | |||||
| 5.2 | 333 | jgi|Poptr1_1|829713|estExt_fgenesh4_pm.C_LG_I0815 | RNA_binding_2 | ptRBD2b-2 | 1 | f | 20647888 | 20651319 | |||||
| 5.2 | 338 | jgi|Poptr1_1|234880|gw1.XI.2860.1 | DNA_binding_protein_ | ptDBP2a-1 | 11 | r | 6899685 | 6909355 | |||||
| 5.2 | 338 | jgi|Poptr1_1|753194|fgenesh4_pg.C_LG_I002797 | DNA_binding_protein_ | ptDBP2a-2 | 1 | r | 28710981 | 28722128 | |||||
| 5.2 | 341 | jgi|Poptr1_1|836278|estExt_fgenesh4_pm.C_280159 | RNA_binding_1 | ptRBD1b | 28 | r | 3542726 | 3547672 | |||||
| 5.2 | 401 | jgi|Poptr1_1|570176|eugene3.00120829 | Chloroplast | RNA_Binding_31 | ptCP31a-1 | 12 | f | 10806695 | 10809618 | ||||
| 5.2 | 401 | jgi|Poptr1_1|835181|estExt_fgenesh4_pm.C_LG_XV0240 | Chloroplast | RNA_Binding_31 | ptCP31a-2 | 15 | f | 6484764 | 6487337 | ||||
| 5.2 | 1204 | jgi|Poptr1_1|819404|estExt_fgenesh4_pg.C_LG_VI1354 | Similar_to_RNA_bindi | ptRBD5 | 6 | r | 13793091 | 13795131 | |||||
| 5.3 | 258 | jgi|Poptr1_1|648692|grail3.0045010901 | SPT5 | ptSPT5a-1 | 4 | f | 15077825 | 15078321 | KOW 1; Supt5 2 | ||||
| 5.3 | 258 | jgi|Poptr1_1|713135|estExt_Genewise1_v1.C_LG_IV0779 | SPT5 | ptSPT5a-2 | 4 | f | 15079874 | 15081050 | KOW 1; Supt5 2 | ||||
| 5.3 | 258 | jgi|Poptr1_1|721868|estExt_Genewise1_v1.C_LG_IX1543 | SPT5 | ptSPT5a-2 | 9 | r | 2592130 | 2593607 | KOW 1; Supt5 2 | ||||
| 5.3 | 295 | jgi|Poptr1_1|554187|eugene3.00030820 | Elongation_Factor(M) | ptEFMa-1 | 3 | r | 10569579 | 10575999 | |||||
| 5.3 | 295 | jgi|Poptr1_1|744104|estExt_Genewise1_v1.C_1270270 | Elongation_Factor(M) | ptEFMa-2 | 127 | f | 784421 | 791612 | |||||
| 5.3 | 477 | jgi|Poptr1_1|272324|gw1.150.139.1 | Elongation_Factor | ptEF2 | 150 | r | 397962 | 404517 | |||||
| 5.3 | 477 | jgi|Poptr1_1|297197|gw1.86.88.1 | Elongation_Factor | ptEF2 | 86 | f | 370123 | 377862 | |||||
| 5.3 | 759 | jgi|Poptr1_1|711780|estExt_Genewise1_v1.C_LG_III0383 | Elongation_Factor | ptEF1 | 3 | r | 10937170 | 10939811 | |||||
| 5.4 | 1096 | jgi|Poptr1_1|820579|estExt_fgenesh4_pg.C_LG_VIII0955 | Glycine_Rich_Protein | ptGRPs-4 | 8 | f | 6845072 | 6846178 |