<h2>SRGD</h2>

Gene Groups

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Physcomitrella patens (Pp)

1. Small nuclear Ribonucleoprotein (snRNP)

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

1.1108e_gw1.46.90.1SmD2ppSmD2-146r16837691684529 Sm 1
1.1108e_gw1.288.28.1SmD2ppSmD2-2288f355675356421 Sm 1
1.1108fgenesh1_pg.scaffold_181000018SmD2ppSmD2-3181f254628255542 Sm 1
1.1147e_gw1.726.1.1SmD1SmD1ppSmD1-a1726f69857964 Sm 1
1.1147estExt_gwp_gw1.C_370112SmD1SmD1ppSmD1-a237r623913625214 Sm 1
1.1147estExt_gwp_gw1.C_1160015SmD1SmD1ppSmD1-a3116f6557166898 Sm 1
1.1181estExt_fgenesh1_pm.C_840022SmESmEppSmE-a184f941266941529 Sm 1
1.1181estExt_fgenesh1_kg.C_2090005SmESmEppSmE-a2209r655902656165 Sm 1
1.1181e_gw1.26.139.1SmESmEppSmE-a326f678454678717 Sm 1
1.1221e_gw1.36.199.1LSM4LSm4ppLSM436f21631822164552 Sm 1
1.1336estExt_fgenesh1_pg.C_320105SmBSmB1ppSmB-a132f14020891402544 Sm 1
1.1336estExt_Genewise1.C_3330059SmBSmB1ppSmB-a2333f390385390819 Sm 1
1.1336gw1.333.63.1SmBSmB1ppSmB-a3333r388029388463 Sm 1
1.1336gw1.446.24.1SmBSmB1ppSmB-a4446r80068440 Sm 1
1.1344estExt_fgenesh1_pg.C_330029SmD3SmD3ppSmD3-b33r303656305563 Sm 1
1.1344fgenesh1_pm.scaffold_33000008SmD3SmD3ppSmD3-b33f367634369541 Sm 1
1.1469estExt_gwp_gw1.C_2180063SmGSmGppSmG-a-1218r581027581753 Sm 1
1.1469estExt_Genewise1.C_4750009SmGSmGppSmG-a-2475f5926159883 Sm 1
1.1472estExt_gwp_gw1.C_1900008LSM7LSm7ppLSM7-1190f254836256294 Sm 1
1.1472estExt_Genewise1.C_350284LSM7LSm7ppLSM7-235f19787451980293 Sm 1
1.1479estExt_gwp_gw1.C_3360028LSM2LSm2ppLSM2336f7908879970 Sm 1
1.1539estExt_Genewise1.C_280109LSM5LSm5ppLSM5/SAD128f887948888833 Sm 1
1.1540e_gw1.219.49.1SmFSmFppSmF-1219r207424208250 Sm 1
1.1540estExt_Genewise1.C_460191SmFSmFppSmF-246r16968191697731 Sm 1
1.1545e_gw1.142.63.1LSM1LSm1ppLSM1b-1142r299541301950 Sm 1
1.1545estExt_fgenesh1_pg.C_460132LSM1LSm1ppLSM1b-246f17184251720753 Sm 1
1.1548estExt_fgenesh1_pg.C_170228LSM6LSm6ppLSM6a-117f25810302582406 Sm 1
1.1548estExt_Genewise1.C_1620125LSM6LSm6ppLSM6a-2162r899918900889 Sm 1
1.1550estExt_fgenesh1_pg.C_1540070LSM8LSm8ppLSM8154f850513852049 Sm 1
1.1561estExt_gwp_gw1.C_160192LSM3LSm3ppLSM3a16r24390852440420 Sm 1
1.292e_gw1.88.197.1Luc7ppLuc7a88f201511205155 DUF259 1
1.292e_gw1.402.25.1Luc7ppLuc7b402f249094254156 DUF259 1
1.2208e_gw1.30.35.1Prp39ppPrp39a-130r12908901295673 HAT 7; TPR-like 1
1.2208e_gw1.164.9.1Prp39ppPrp39a-2164r7863883221 HAT 7; TPR-like 1
1.2208estExt_Genewise1.C_590198Prp39ppPrp39a-359r12537711259456 HAT 7; TPR-like 1
1.2403e_gw1.42.134.1U1-70KSnp1ppU1-70K-142f21626952165062 RRM 1
1.2403e_gw1.332.23.1U1-70KSnp1ppU1-70K-2332r267376269534 RRM 1
1.2463estExt_fgenesh1_pg.C_1550066U1C_SubunitYhc1ppU1C-1155f925114929005 C2H2 1; mrCtermi 3
1.2463fgenesh1_pg.scaffold_267000046U1C_SubunitYhc1ppU1C-2267r563816566347 C2H2 1; mrCtermi 3
1.2475estExt_fgenesh1_pg.C_1740055FBP11Prp40ppPrp40a174f642693653028 WW 2; FF 5
1.2538e_gw1.22.82.1Related_to_Luc7-likeLuc7ppLuc7-rl22r13453791349634 DUF259 1
1.3170e_gw1.156.105.1SF3a120/SAP114_SubunPrp21pppSAP114-1a-1156f539564542280 SWAP/Surp 2
1.3170estExt_gwp_gw1.C_30503SF3a120/SAP114_SubunPrp21pppSAP114-1a-23f41021324104960 SWAP/Surp 2
1.3203estExt_gwp_gw1.C_110154SF3b160/SAP155_SubunHsh155ppSAP15511r20578592061737 HEAT 1; ARM 2; SAP
1.3222e_gw1.98.18.1SF3b150/SAP145_SubunCus1pppSF3b150-198r5509761806 PSP 1; DUF382 1
1.3222estExt_gwp_gw1.C_5050010SF3b150/SAP145_SubunCus1pppSF3b150-2505r6497271580 PSP 1; DUF382 1
1.3228estExt_Genewise1.C_1030037SF3b_14b/PHP5ARds3pppSF3b_14b/PHP5A-a103f575936576268 UPF0123 1
1.3256estExt_fgenesh1_pg.C_1880047SF3b120/SAP130_SubunRse1pppSAP130a-1188r595960600641 CPSF_A 1; WD40-like
1.3256estExt_Genewise1.C_3910042SF3b120/SAP130_SubunRse1pppSAP130a-2391f203338207755 CPSF_A 1; WD40-like
1.3256fgenesh1_pg.scaffold_197000028SF3b120/SAP130_SubunRse1pppSAP130a-3197r185777190174 CPSF_A 1; WD40-like
1.3347e_gw1.87.54.1U2B''_SubunitMsl1pppU2B''87f790009792392 RRM 2
1.3412estExt_fgenesh1_pg.C_1520025U2A'_SubunitLea1pppU2A-1152r228919232176 LRR 4
1.3412gw1.134.46.1U2A'_SubunitLea1pppU2A-2134r211037213891 LRR 4
1.3412estExt_Genewise1.C_490074U2A'_SubunitLea1pppU2A-349f863589866698 LRR 4
1.3460estExt_Genewise1.C_630098p14Snu17pppP14-163f14801071480475 RRM 1
1.3461estExt_gwp_gw1.C_2180031p14Snu17pppSAP61218r353439357853 C2H2 1
1.3466estExt_gwp_gw1.C_2150124SF3b_10ppSF3b10a215f839026840286 SF3b10 1
1.3470estExt_gwp_gw1.C_700168SF3b53/SAP49_SubunitHsh49pppSAP49a70r15747371577928 RRM 2
1.3758gw1.29.96.1SF3a66/SAP62_SubunitPrp11pppSAP62-129f928076930862 C2H2 1
1.3758fgenesh1_pg.scaffold_318000042SF3a66/SAP62_SubunitPrp11pppSAP62-2318f427519430488 C2H2 1
1.444estExt_fgenesh1_pm.C_4310002116kD_Subunit/elongaSnu114pppU5-116-2a431f6056064010 EFG_C 1; GTP_EFTU
1.444estExt_gwp_gw1.C_1380085116kD_Subunit/elongaSnu114pppU5-116-2b138f367820370409 EFG_C 1; GTP_EFTU
1.444estExt_Genewise1.C_1380094116kD_Subunit/elongaSnu114pppU5-116-2c138r414217417476 EFG_C 1; GTP_EFTU
1.444estExt_Genewise1.C_1380097116kD_Subunit/elongaSnu114pppU5-116-2d3495f1082674 EFG_C 1; GTP_EFTU
1.444estExt_Genewise1.C_4310001116kD_Subunit/elongaSnu114pppU5-116-2e431r4334246996 EFG_C 1; GTP_EFTU
1.444estExt_Genewise1.C_34950001116kD_Subunit/elongaSnu114pppU5-116-2f138r340853344652 EFG_C 1; GTP_EFTU
1.475e_gw1.84.11.1200kD_Subunit/HelicaBrr2pppU5-200-184f698434716030 DEAD 1; Helicase_C
1.475estExt_Genewise1.C_280123200kD_Subunit/HelicaBrr2pppU5-200-228f957712965188 DEAD 1; Helicase_C
1.4182estExt_gwp_gw1.C_4380024220kD_SubunitPrp8pppU5-220/Prp8a-1438r126689134523 Mov34 1
1.4182estExt_Genewise1.C_1010009220kD_SubunitPrp8pppU5-220/Prp8a-2101f5868266750 Mov34 1
1.4259e_gw1.11.51.1100kD_SubunitPrp28pppU5-100KD-111r14451951450617 DEAD 1; Helicase_C
1.4259estExt_Genewise1.C_760056100kD_SubunitPrp28pppU5-100KD-276f591177597116 DEAD 1; Helicase_C
1.4402estExt_Genewise1.C_160130102KD/Prp6-likePrp6pppU5-102KD-116f21941792196995 Ubiquitin 1; TPR 3
1.4402estExt_Genewise1.C_2120013102KD/Prp6-likePrp6pppU5-102KD-2212r5118754027 Ubiquitin 1; TPR 3
1.4405estExt_gwp_gw1.C_680076116kD_Subunit/elongaSnu114pppU5-116-368f314528318386 EFG_C 1; GTP_EFTU
1.4413estExt_fgenesh1_pm.C_1170010116kD_Subunit/elongaSnu114pppU5-116-1a-1117f917911923392 EFG_C 1; GTP_EFTU 1
1.4413estExt_fgenesh1_pm.C_2140004116kD_Subunit/elongaSnu114pppU5-116-1a-2214f242136247564 EFG_C 1; GTP_EFTU 1
1.4637estExt_Genewise1.C_141006515kD_SubunitDib1pppU5-15141r732592733344 DIMI 1; Thioredoxin
1.4755e_gw1.72.72.140kD_SubunitppU5-40-172f12892331291550 WD-40 7
1.4755estExt_gwp_gw1.C_117003340kD_SubunitppU5-40-2117f546198548940 WD-40 7
1.41099e_gw1.41.16.1200kD_Subunit/HelicaBrr2pppU5-200-341r21210722127790 DEAD 1; Sec63 1; Ru
1.5223estExt_gwp_gw1.C_280040U4/U6-15.5KSnu13pppTri15.5-1a-128r313617314003 Ribosomal_L7Ae 1
1.5223estExt_gwp_gw1.C_650023U4/U6-15.5KSnu13pppTri15.5-1a-265r150885151271 Ribosomal_L7Ae 1
1.5223estExt_Genewise1.C_340284U4/U6-15.5KSnu13pppTri15.5-1a-334r17283831728769 Ribosomal_L7Ae 1
1.5223estExt_Genewise1.C_650018U4/U6-15.5KSnu13pppTri15.5-1a-465f136621137007 Ribosomal_L7Ae 1
1.5260fgenesh1_pm.scaffold_154000005U4/U6-61KDPrp31ppU5-61/Prp31a154f295513298831 Nop 1
1.5411estExt_fgenesh1_pg.C_2690063U4/U6-90K/SAP90Prp3pppSAP90-1269f583553585615
1.5756e_gw1.29.46.1U4/U6-60K/SAP60Prp4pppSAP6029r15751171577898 WD-40 7;SFM 1;WD40
1.6399estExt_fgenesh2_pg.C_990065Tri-110KDSAD1ppTri11099f12498961256253 SART-1 1
1.6634estExt_fgenesh1_pg.C_870028(U4/U6.U5)Tri-27kD/RY1ppTri-27kD/RY187r386165388147
1.6638gw1.7.83.1Tri-65_KDSnu66pppTri65a7r230987234731 UCH 1; ZnF_UBP 1
1.6753estExt_gwp_gw1.C_2010100hSnu23/FLJ31121Snu23pppSnu23201f457076457687 ZnF_U1 1
1.7225e_gw1.3.614.1U11/U12-25K(-99_protein)ppU11/U12-25K-13f28951812896614 C2H2 1
1.7225e_gw1.278.27.1U11/U12-25K(-99_protein)ppU11/U12-25K-2278f297573299014 C2H2 1
1.7225estExt_Genewise1.C_1090004U11/U12-25K(-99_protein)ppU11/U12-25K-3109f339126340449 C2H2 1
1.7346e_gw1.116.32.1U11/U12-65KppU11/U12-65K116r422145426259 RRM 2;PHOSPHOPANTET
1.7982fgenesh1_pg.scaffold_70000045U11/U12-35KppU11/U12-35kD70r604891608378 RRM 1
1.71101e_gw1.43.74.1U11/U12-31K(MADP1)ppU11/U12-31K43r16721871673946 RRM 1; CCHC 1

2. Splicing factors

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

2.149estExt_gwp_gw1.C_2150084U2AF35ppU2AF35/AUS-1215r564606566014 RRM 1; CCHC 2;
2.149gw1.15.161.1U2AF35ppU2AF35/AUS-215r105309106599 RRM 1; CCHC 2;
2.155e_gw1.58.41.1U2AF65ppU2AF65a/AULb270f300774307499 RRM 3;
2.155e_gw1.79.119.1U2AF65ppU2AF65a/AULb58r15935461599364 RRM 3;
2.155e_gw1.98.112.1U2AF65ppU2AF65a/AULb79f457158462571 RRM 3;
2.155estExt_gwp_gw1.C_2700027U2AF65ppU2AF65a/AULb98r755039761402 RRM 3;
2.155gw1.88.127.1U2AF65ppU2AF65a/AULb88r247836253280 RRM 3;
2.172e_gw1.81.40.1PTB/hnRNP_IppPTB2a81r10381301043282 RRM 2
2.172gw1.326.8.1PTB/hnRNP_IppPTB2b326r675511733 RRM 2
2.1169e_gw1.48.34.1PTB/hnRNP_IppPTB1-148f11308821135269 RRM 4
2.1169estExt_Genewise1.C_360029PTB/hnRNP_IppPTB1-236f221418225624 RRM 4
2.1398estExt_gwp_gw1.C_870043SF1/BBPppSF1/BBP-187r795948798464 RRM 1; CCHC 2; KH
2.1398estExt_gwp_gw1.C_1380136SF1/BBPppSF1/BBP-2138f917195919699 RRM 1; CCHC 2; KH
2.1409e_gw1.126.58.1U2AF65ppAUL2126f12101121212702 RRM 1
2.1481estExt_fgenesh1_pm.C_140014CBP80Cbc2pppCBP80-114f819495822140 MIF4G 1; ARM 3
2.1481estExt_Genewise1.C_410020CBP80Cbc2pppCBP80-241f124451127075 MIF4G 1; ARM 3
2.1553e_gw1.333.45.1U2AF35_related_proteppUrp333r161452163391 RRM 1; CCCH 2
2.225e_gw1.7.233.1SF2/ASFppSRp30-17r3734439382 RRM 2
2.225e_gw1.173.63.1SF2/ASFppSRp30-2173f9683399067 RRM 2
2.225estExt_Genewise1.C_280136SF2/ASFppSRp30-328f10418981044004 RRM 2
2.231e_gw1.207.127.19G8ppRSZp22-1207r660710662592 RRM 1; CCHC 1
2.231e_gw1.332.33.19G8ppRSZp22-2332r113811115934 RRM 1; CCHC 1
2.261122960|e_gw1.42.218.1SC35ppSC35-1 RRM 1;
2.261172957|estExt_fgenesh1_pg.C_3970019SC35ppSC35-2 RRM 1;
2.2151estExt_fgenesh1_pm.C_2700006TASR-2-ppSCL30a-1270r377098379191 RRM 1
2.2151e_gw1.183.81.1TASR-2ppSCL30a-2183r326969330456 RRM 1
2.2204estExt_fgenesh1_pg.C_1440043Plant_Novel_SR_proteppRSp40144f725791728662 RRM 2
2.3255estExt_gwp_gw1.C_1960080SR140ppSR140-1a196f705282712687 Surp 1;RRM 1;RPR 1
2.3255estExt_fgenesh2_pg.C_1370031SR140ppSR140-1b137r433522441080 Surp 1;RRM 1;RPR 1
2.3549e_gw1.51.85.1SPF30ppSPF30-151f15148141517436 Tudor 1
2.3549e_gw1.79.70.1SPF30ppSPF30-279f580145582812 Tudor 1
2.3549estExt_fgenesh1_pg.C_590212SPF30ppSPF30-359f18910111893581 Tudor 1
2.3647estExt_fgenesh1_pg.C_2810007SPF45ppSPF45281f2663228259 DIII/G-patch domain
2.41estExt_fgenesh1_pg.C_20112HSP73/HSPA8PpHSP73-12r10827531085179 Hsp70 1;
2.41estExt_Genewise1.C_390053HSP73/HSPA8PpHSP73-239r465010467220 Hsp70 1;
2.41estExt_Genewise1.C_1810001HSP73/HSPA8PpHSP73-3181f2460226590 Hsp70 1;
2.41estExt_Genewise1.C_3510021HSP73/HSPA8PpHSP73-4351f142870145202 Hsp70 1;
2.41estExt_Genewise1.C_5260001HSP73/HSPA8PpHSP73-5526r20664440 Hsp70 1;
2.41fgenesh2_pg.scaffold_97000105HSP73/HSPA8PpHSP73-697f13263471328786 Hsp70 1;
2.41fgenesh1_pm.scaffold_91000017HSP73/HSPA8PpHSP73-791f688564690522 Hsp70 1;
2.41fgenesh1_pg.scaffold_288000014HSP73/HSPA8PpHSP73-8288f209151211139 Hsp70 1;
2.41fgenesh1_pg.scaffold_298000015HSP73/HSPA8PpHSP73-9298f231753233702 Hsp70 1;
2.4134estExt_fgenesh1_pm.C_1390014G10Cwc14pppG10-1139f737986739245 G10 1;
2.4134estExt_gwp_gw1.C_220243G10Cwc14pppG10-222f18551541856562 G10 1;
2.4167estExt_fgenesh1_pm.C_740015hSyf3/CRNClf1/Syf3pppCRN1a-174r842597846465 TPR 1; HAT 14; TPR
2.4167estExt_fgenesh1_pg.C_50158hSyf3/CRNClf1/Syf3pppCRN1a-25f29502952954125 TPR 1; HAT 14; TPR
2.4168estExt_fgenesh1_pg.C_2490037hSyf3/CRNClf1/Syf3pppCypE1a249f345599346114 Pro_isomerase 1
2.4288estExt_fgenesh2_pg.C_1390014hSyf1Syf1pppSyf1139r296968300504 TPR 1;HAT 10;TPRli
2.4297estExt_gwp_gw1.C_840209hECM2Ecm2pppECM2-1a84r14895071491789 RRM 1; CCCH 1
2.4407estExt_fgenesh2_kg.C_780006SPF27/BCAS2ppSPF2778r212826214998 BCAS2 1
2.4414estExt_gwp_gw1.C_640096hPrp19Prp19pppPrp19a-164f15909751596813 WD-40 7; Ubox 1
2.4414estExt_Genewise1.C_140201hPrp19Prp19pppPrp19a-214r15199851525470 WD-40 7; Ubox 1
2.4467e_gw1.169.38.1PRL1Prp46pppPRL1-1169r412481415770 WD-40 2;WD40like 1
2.4467estExt_fgenesh1_pg.C_4020035PRL1Prp46pppPRL1-2402r289490294080 WD-40 2;WD40like 1
2.4471e_gw1.19.97.1GCIP_p29Syf2ppGCIPp2919f183162185141
2.4546fgenesh1_pg.scaffold_169000061AD-002Cwc15pppAD-002169f595530597355 Cwf_Cwc_15 1
2.4559estExt_Genewise1.C_6410001CDC5Cef1ppCDC5641f39188205 SANT 2
2.4640fgenesh1_pg.scaffold_294000001beta_catenin-like_1ppCTNNNBL1294f51538300 Armadillo 1; ARM 1
2.4642estExt_gwp_gw1.C_4750024KIAA0560ppAquarius475r8481988994
2.4645estExt_gwp_gw1.C_560076SKIPPrp45pppSKIP56f851837853651 SKIP/SNW 1
2.4866gw1.290.18.1MGC23918ppMGC23918290r329021329510
2.4983estExt_fgenesh1_pm.C_120049PPIase-like_1ppPPIase-like112r28635202865700 Pro_isomerase 1
2.41100estExt_fgenesh1_pm.C_1580013hIsy1Isy1pppIsy1158r580883582187 Lsy1 1
2.5122e_gw1.213.69.1hPrp4kinaseppPRP4K-1a213f659148662022 Pkinase 1;TyrKc 1;
2.5122146901|e_gw1.250.5.1hPrp4kinaseppPRP4K-1b Pkinase 1;TyrKc 1;
2.5220estExt_gwp_gw1.C_1820056TBL1-rp_1ppTBL1-rp1182f809468814771 WD-40 5; Peptidease
2.5464fgenesh1_pg.scaffold_2000404N-CoR1ppN-CoR1-12f47216944732222 SANT 2;Homeodomain_
2.5464fgenesh1_pg.scaffold_61000017N-CoR1ppN-CoR1-261r145321159194 SANT 2;Homeodomain_
2.5474e_gw1.269.82.1FBP-21ppFBP21269r9102593195 C2H2 1
2.5543e_gw1.91.14.1Smc-1ppSmc191r260241267810 ATP_GTP_A_BS 1;SMC_
2.5868e_gw1.245.68.1NPW38ppNPW38245f495251499847 WW 2
2.665e_gw1.4.224.1ALYppALY-1a390r264808267174 RRM 1;
2.665e_gw1.77.52.1ALYppALY-1b4r584076586052 RRM 1;
2.665estExt_fgenesh1_pg.C_3900014ALYppALY-1c77r856758859065 RRM 1;
2.665fgenesh1_pm.scaffold_57000010ALYppALY-1d57r13908921393092 RRM 1;
2.680estExt_gwp_gw1.C_1230109UAP56ppUAP56-1123r945417949418 DEAD 1; Helicase_C
2.680fgenesh1_pg.scaffold_311000013UAP56ppUAP56-2311r165483169303 DEAD 1; Helicase_C
2.6342estExt_gwp_gw1.C_550077Srm160-likeppSRM102-155r825998827430 PWI 1
2.6342estExt_gwp_gw1.C_1810080Srm160-likeppSRM102-2181f821166823230 PWI 1
2.6345estExt_fgenesh1_pm.C_350034RNPS1ppSR45/ppRNPS1-135f15123691516130 RRM 1
2.6345estExt_fgenesh1_pg.C_1180104RNPS1ppSR45/ppRNPS1-2118f839466843208 RRM 1
2.6345fgenesh1_pg.scaffold_157000058RNPS1ppSR45/ppRNPS1-3157r694381698212 RRM 1
2.6348estExt_fgenesh1_kg.C_630004MagohppMagoh-163r932277933474 Mago_nashi 1
2.6348estExt_gwp_gw1.C_1250022MagohooMagoh-2125f301327302498 Mago_nashi 1
2.6417estExt_fgenesh1_pm.C_5190002Nuk-34/eIF4A3/DDX48ppDDX48/eIF4A3-1a519r8868692001 DEAD 1; Helicase_C
2.6417fgenesh1_pm.scaffold_275000006Nuk-34/eIF4A3/DDX48ppDDX48/eIF4A3-1b275r365287368197 DEAD 1; Helicase_C
2.6480e_gw1.31.212.1Y14ppY14-131r14036121404960 RRM 1; RBMB 4
2.6480e_gw1.136.78.1Y14ppY14-2136f705516707029 RRM 1; RBMB 4
2.6650e_gw1.313.11.1pininppPinin-1313f5358657717 Pinin/SDK/memA 1
2.6650estExt_gwp_gw1.C_360097pininppPinin-236f10400851044398 Pinin/SDK/memA 1
2.7415estExt_gwp_gw1.C_3420016Prp18Prp18ppPrp18-1342r245577247397 Prp18 1; SFM 1
2.7416fgenesh1_pg.scaffold_390000001Prp18Prp18ppPrp17-1390f9328395016 WD-40 7;
2.7551estExt_gwp_gw1.C_200137Slu7Slu7pppSLU7-1a20r18053491808953
2.7747e_gw1.39.102.1Prp17Prp17pppPrp1739f398582400662 WD-40 6
2.71102estExt_gwp_gw1.C_1240010Prp22Prp22ppPrp22-3124f2399725406 DEAD 1;Helicase_C
2.71103e_gw1.89.8.1Prp22Prp22ppPrp22-289f11056691109669 DEAD 1;Helicase_C
2.813estExt_fgenesh1_pg.C_3310026Prp2ppPrp2-1a331f358628365754 DEAD 1; Helicase_C
2.813estExt_gwp_gw1.C_180152Prp2ppPrp2-1a18f20826792086845 DEAD 1; Helicase_C
2.813estExt_gwp_gw1.C_430071Prp2ppPrp2-1a43f420112428868 DEAD 1; Helicase_C
2.813estExt_Genewise1.C_180147Prp2ppPrp2-1a18f20197782023944 DEAD 1; Helicase_C
2.813estExt_Genewise1.C_4270010Prp2ptPrp2-1a427r4546549721 DEAD 1; Helicase_C
2.8293estExt_fgenesh1_pg.C_180039SRm300ppSRM300like-118f288582296204 RRM 1; Filamin/ABP28
2.8293fgenesh1_pg.scaffold_8000015SRm300ppSRM300like-28r115341120140 RRM 1; Filamin/ABP28
2.8296e_gw1.307.20.1Prp5ppPrp5-1a307r316428320683 DEAD 1; Helicase_C
2.8478e_gw1.234.40.1hTra-2/SFRS10ppTra/SFRS1-1234f4074642621 RRM 1
2.8478gw1.3.275.1hTra-2/SFRS10ppTra/SFRS1-23r11004411100797 RRM 1
2.8478gw1.27.117.1hTra-2/SFRS10ppTra/SFRS1-327r962774963742 RRM 1
2.8478gw1.21.172.1hTra-2/SFRS10ppTra/SFRS1-421r14156371417797 RRM 1
2.8754e_gw1.257.4.1Prp5ppPrp5257f385636389501 DEAD 1;Helicase_C
2.8979e_gw1.101.51.1hDbr1dbr1ppDbr1101f725681727583 Metallophos 1;DBRI

3. Splicing regulation

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

3.1135gw1.29.50.1KinaseSRPK2ppSRPK2a-129r24095602411650 Pkinase 1; TyrKc 1
3.1135gw1.38.75.1KinaseSRPK2ppSRPK2a-238f15633841564784 Pkinase 1; TyrKc 1
3.1135gw1.248.16.1KinaseSRPK2ppSRPK2a-3248r673494675531 Pkinase 1; TyrKc 1
3.1290e_gw1.100.30.1KinaseLammer/CLK_kinaseppAFC3-1100r591655595053 Pkinase 1;TyrKc 1;S
3.1290e_gw1.132.89.1KinaseLammer/CLK_kinaseppAFC3-2132f503753507181 Pkinase 1;TyrKc 1;S
3.1290estExt_Genewise1.C_4250007KinaseLammer/CLK_kinaseppAFC3-3425f7697680304 Pkinase 1;TyrKc 1;S
3.245estExt_fgenesh1_pg.C_1430007Glycine-Rich_RBDppGRBP1d/GRBP1c/GRBP1e-1143r5484756176 RRM 1
3.245estExt_Genewise1.C_450174Glycine-Rich_RBDppGRBP1d/GRBP1c/GRBP1e-245f22484372249710 RRM 1
3.245gw1.118.111.1Glycine-Rich_RBDppGRBP1d/GRBP1c/GRBP1e-3118f541819543040 RRM 1
3.245gw1.118.113.1Glycine-Rich_RBDppGRBP1d/GRBP1c/GRBP1e-4118r540077541062 RRM 1
3.2109gw1.123.70.1Glycine-Rich_RBDppGRP7/ppGRBP3a-1123r506271506588 RRM 1
3.2109gw1.136.87.1Glycine-Rich_RBDppGRP7/ppGRBP3a-2136f456800457060 RRM 1
3.2109fgenesh1_pg.scaffold_42000167Glycine-Rich_RBDppGRP7/ppGRBP3a-342f20800232080511 RRM 1
3.329e_gw1.6.161.1hnRNP_A/BPpRNPA/B-16f14704521471863 RRM 2
3.329e_gw1.13.176.1hnRNP_A/BPpRNPA/B-213r11142711115615 RRM 2
3.329e_gw1.13.177.1hnRNP_A/BPpRNPA/B-313r11859771187321 RRM 2
3.329e_gw1.159.40.1hnRNP_A/BPpRNPA/B-4159f199838201341 RRM 2
3.3257gw1.70.172.1hnRNP_A/BppUBA2c-170r14034631404360 RRM 2
3.3257gw1.188.84.1hnRNP_A/BppUBA2c-2188f379310379810 RRM 2
3.493e_gw1.118.143.1hnRNP_R/QhnRNP-R3/ppPA/B-1118r304566305955 RRM 3
3.493e_gw1.164.69.1hnRNP_R/QhnRNP-R3/ppPA/B-2164f722020723572 RRM 3
3.493e_gw1.327.24.1hnRNP_R/QhnRNP-R3/ppPA/B-3327f176051177733 RRM 3
3.4179estExt_Genewise1.C_1480019hnRNP_R/Qpp-hnRNP-R1148f261645264518 RRM 3
3.4183estExt_fgenesh1_pm.C_1750001CUG-BPppCUG-BP1-1175f5422458619 RRM 3; HUDSXLRNA 4
3.4183e_gw1.12.73.1CUG-BPppCUG-BP1-112f13969001400857 RRM 3; HUDSXLRNA 4
3.4337e_gw1.158.95.1_ppFCA1-1158r774869778691 RRM 2; WW 1
3.4337gw1.47.198.1_ppFCA1-247r15336561536982 RRM 2; WW 1
3.4350e_gw1.26.120.1hnRNP_Gpp-hnRNP-G2-126f20010552001738 RRM 1; CCHC 1
3.4350e_gw1.128.62.1hnRNP_Gpp-hnRNP-G2-2128f464595465269 RRM 1; CCHC 1
3.4555estExt_fgenesh2_pg.C_1480033hnRNP_P2pp-hnRNP-P148r382821386203 RRM 1; ZnF_RBZ 2
3.4639gw1.150.78.1hnRNP_E1/E2pp-hnRNP-E-1150f699212701999 KH 3
3.4639gw1.51.212.1hnRNP_E1/E2pp-hnRNP-E-251f922906925235 KH 3
3.4746e_gw1.462.8.1hnRNP_F/hnRNP_Hpp-hnRNP-F/AtRNPH/F_462r2635527074 RRM 2
3.5107estExt_fgenesh1_kg.C_4560001hnRNP-like_5ppAth1456r162674164791 HANP4_PAI-RBP! 1
3.5107estExt_fgenesh1_pg.C_450162hnRNP-like_5ppAth245r21346022137105 HANP4_PAI-RBP! 1
3.5107estExt_fgenesh2_pg.C_970090hnRNP-like_5ppAth397f11916211193767 HANP4_PAI-RBP! 1
3.5107fgenesh1_pm.scaffold_22000005hnRNP-like_5ppAth422f116531118998 HANP4_PAI-RBP! 1
3.5636estExt_Genewise1.C_3910068hnRNP-like_3ppRBP45d-1391f323784328551 RRM 3
3.5636gw1.219.6.1hnRNP-like_3ppRBP45d-2219f754638759678 RRM 3
3.5636gw1.339.2.1hnRNP-like_3ppRBP45d-3339r4449249529 RRM 3

4. Novel spliceosome proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

4.1148estExt_fgenesh1_pm.C_650013eIF3sub2pp-eIF3sub2a-165f773628776114 WD40 4
4.1148estExt_fgenesh1_pg.C_340208eIF3sub2pp-eIF3sub2a-234r20165442019265 WD40 4
4.1148estExt_gwp_gw1.C_280017eIF3sub2pp-eIF3sub2a-328r134507137266 WD40 4
4.1206e_gw1.80.9.1hTHO2ppTHO280f550645564780 Tho2
4.1254estExt_gwp_gw1.C_970072KIAA0983ppKIAA0983-197f748389750729 Fimp 1
4.1291estExt_fgenesh1_pm.C_90013eIF3_sub6pp-eIF3sub6-19f896185899978
4.1291estExt_fgenesh1_pm.C_730006eIF3_sub6pp-eIF3sub6-273r9387296687
4.1291estExt_gwp_gw1.C_3630017eIF3_sub6pp-eIF3sub6-3363f121106124168
4.1335estExt_Genewise1.C_930098C21orf66ppC21orf6693r12409471244951
4.1400estExt_gwp_gw1.C_70184hHPR1ppHPR17r13928331394533
4.1483estExt_gwp_gw1.C_180167HsKin17Rts2pppKin17-118f23994902401099
4.1541e_gw1.35.320.1CF_I-25kDppCFI-25kD-135r13865671388704
4.1976fgenesh1_pm.scaffold_61000005CPSF_160KppCPSF-160k61f163091173918
4.232estExt_fgenesh1_pm.C_2810008PAB1/PAB2ppPABP1/ppPAB1-1257f432088435809 RRM 4
4.232e_gw1.51.213.1PAB1/PAB2ppPABP1/ppPAB1-2281f215557219043 RRM 4
4.232estExt_fgenesh1_pg.C_2570045PAB1/PAB2ppPABP1/ppPAB1-3126r867910871406 RRM 4
4.232estExt_Genewise1.C_1260120PAB1/PAB2ppPABP1/ppPAB1-451f798945801163 RRM 4
4.369estExt_fgenesh1_pm.C_1380026p72p72-4/p72-3/p72-5138r845052848948 DEAD 1; Helicase_C
4.369estExt_gwp_gw1.C_420049p72p72-4/p72-3/p72-542r725119729001 DEAD 1; Helicase_C
4.3100estExt_gwp_gw1.C_590062p72p72-159f333236339104 DEAD 1; Helicase 1
4.3136estExt_gwp_gw1.C_580012KIAA0052ppKIAA0052a-158r162370170050 DEAD 1; DSHCT 1; H
4.3136estExt_gwp_gw1.C_690013KIAA0052ppKIAA0052a-269f124320131904 DEAD 1; DSHCT 1; H
4.3339e_gw1.135.21.1hDbp5Dbp5pppDbp5-1135f278904281993
4.3339e_gw1.492.1.1hDbp5Dbp5pppDbp5-2492f99770103001
4.3462estExt_Genewise1.C_2150004Abstrakt(Ded1p)ppAbstrakt-a215f1385815708
4.3654estExt_fgenesh1_pm.C_2680003DDX35ppDDX35268f3224134295
4.4404fgenesh1_pg.scaffold_131000018KIAA0073ppKIA0073131r128055132685
4.4652estExt_Genewise1.C_1500031PPIase-like_3ppPPIL3150r331819333422
4.4745estExt_fgenesh1_pm.C_330010Cyp-60ppCYP-6033f420757423405
4.4751e_gw1.170.62.1SDCCAG10ppSDCCAG10170r648152651525
4.554gw1.11.54.1CDCL2_p110ppCDCL2p110-111f340348341679 Pkinase_Tyr 1; Pkin
4.570estExt_fgenesh1_pg.C_2070055RNPC2ppNPC2a/ppNPC2b207r681387685260 RRM 2
4.570estExt_gwp_gw1.C_3320014RNPC2ppNPC2a/ppNPC2b332f121216124132 RRM 2
4.599gw1.36.181.1IMP3ppIMP3/KOC36r561485563794 KH 4
4.5180estExt_fgenesh1_pg.C_320174RBM5ppRBM5-132r21916952198982 G-patch 1; RRM 2;
4.5180fgenesh1_pm.scaffold_40000018RBM5ppRBM5-240f466837472406 G-patch 1; RRM 2;
4.5184e_gw1.430.3.1PMSCL2ppPMSCL2-1430r188391192329 3_5_exonuc 1; HRDC
4.5207e_gw1.58.172.1DKFZP586O0120ppDKFZP586O0120-158f499477499830 DUF1754 1
4.5207jgi|Phypa1_1|39455|gw1.59.213.1DKFZP586O0120ppDKFZP586O0120-2 DUF1754 1
4.5261estExt_fgenesh1_pg.C_150112RACK1Asc1pppRACK1a-115r13027681303718 WD40 5
4.5261estExt_Genewise1.C_2590023RACK1Asc1pppRACK1a-2259f424857425807 WD40 5
4.5261estExt_Genewise1.C_2760003RACK1Asc1pppRACK1a-3276f1259513545 WD40 5
4.5289estExt_fgenesh1_pg.C_2710053AcinusLppAcinusL-1271r480875484183 SAP 1
4.5289estExt_fgenesh2_pg.C_890063AcinusLppAcinusL-289f869687873173 SAP 1
4.5294estExt_gwp_gw1.C_1360127hSmu-1/FLJ10805ppSmu-1a136f914214919627
4.5294estExt_Genewise1.C_310051hSmu-1/FLJ10805ppSmu-1b31f370847376153
4.5334fgenesh1_pg.scaffold_4000037TIP-49Rvb1pppTIP494r600396604200
4.5340estExt_Genewise1.C_3760042UBL5pHub1pppUBL5a376f285312285533
4.5343estExt_fgenesh1_pg.C_730012KIAA1604ppKIAA160473r5921161322
4.5406estExt_Genewise1.C_390200CA150ppCA150-139f16628131669758
4.5406fgenesh1_pg.scaffold_2000159CA150ppCA150-22f15583041565992
4.5408estExt_fgenesh1_pg.C_2290024DGSI_proteinppDGCR14229r346646348829
4.5465e_gw1.2.614.1SF4/F23858ppSF42f907869910543
4.5473estExt_fgenesh1_pm.C_2200004NOSIPppNOSIP-1220r386595388103
4.5473estExt_gwp_gw1.C_2580008NOSIPppNOSIP-2258f100076101280
4.5476e_gw1.162.15.1TFIP11/TIP39ppTFIP11/TIP39a-1162r519978522539
4.5476estExt_gwp_gw1.C_2920010TFIP11/TIP39ppTFIP11/TIP39a-2292r7728079862
4.5484estExt_fgenesh1_pg.C_2550039TIP-48ppRuvB/TIP48a-1255r558789560924
4.5484fgenesh1_pm.scaffold_402000007TIP-48ppRuvB/TIP48a-2402r169250171181
4.5552fgenesh1_pm.scaffold_299000002Ku70ppKu70299f1084316519
4.5554estExt_gwp_gw1.C_1140075ZNF183ppZNF183a114r473523475000
4.5556estExt_fgenesh1_pg.C_140117MFAP1ppMFAP1a14r12270631228883
4.5633fgenesh1_pm.scaffold_427000004MGC4238ppMORG1427r7342876066
4.5643gw1.17.31.1PMSCL2ppPMSCL2-317r22033282208154
4.5644estExt_gwp_gw1.C_3000034PMSCL2ppRED300r336183340430
4.5646estExt_fgenesh1_pg.C_620092FLJ90157/DKFZp434E22ppPSP162r13119811315204
4.5649e_gw1.294.23.1FLJ10374ppCWF16-1294r527858529975
4.5651estExt_gwp_gw1.C_2800025CactinppCactin280f251350253236
4.5749gw1.8.103.1FLJ10634ppCAJ1/FLJ106348r26953152697010
4.5750estExt_fgenesh1_pg.C_3090029FLJ10206ppFLJ10206309f298414306614
4.5871fgenesh1_pm.scaffold_74000006MGC13125Cwc26pppMGC1312574f313690315387
4.5977estExt_fgenesh1_pg.C_3600017SPF31ppSPF31/Jiv360f292674293408

5. Possible splicing related proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

5.1205fgenesh1_pg.scaffold_1052000001Splicing_factor_likeppSFL3-11052f1459915481 KH_1 2
5.1205estExt_fgenesh1_pg.C_800041Splicing_factor_likeppSFL3-280r333788338507 KH_1 2
5.1205fgenesh1_pg.scaffold_87000102Splicing_factor_likeppSFL3-387r11768851181389 KH_1 2
5.1224e_gw1.41.217.1Splicing_factor_likeppSFL6a-141r489446492910 Pro_isomerase 1
5.1224e_gw1.279.48.1Splicing_factor_likeppSFL6a-2279r150335153520 Pro_isomerase 1
5.1547estExt_gwp_gw1.C_1010073Splicing_factor_likeppSFL5101f715729723488
5.1641e_gw1.28.128.1Splicing_factor_likeppSFL428f12981661301876
5.2121estExt_fgenesh1_pm.C_220029DNA_binding_protein_ppDBP1a-122r14298591432633 NOP5NT 1; NOSIC 1;
5.2121estExt_fgenesh1_pg.C_110141DNA_binding_protein_ppDBP1a-211f19576491960330 NOP5NT 1; NOSIC 1;
5.2333estExt_fgenesh1_pg.C_4620015RNA_binding_2ppRBD2b-1462r139658141801
5.2333fgenesh2_pg.scaffold_148000004RNA_binding_2ppRBD2b-2148r4343244442
5.2338fgenesh1_pg.scaffold_458000001DNA_binding_protein_ppDBP2a-1458f2836236918
5.2338estExt_Genewise1.C_2030018DNA_binding_protein_ppDBP2a-2203f490994499247
5.3258e_gw1.50.8.1SPT5ppSPT5a-150f17820821789596 KOW 1; Supt5 2
5.3258e_gw1.144.2.1SPT5ppSPT5a-2144r165349173788 KOW 1; Supt5 2
5.3295e_gw1.100.7.1Elongation_Factor(M)ppEFMa-1100r200942208040
5.3295estExt_Genewise1.C_200056Elongation_Factor(M)ppEFMa-220r583685590843
5.3759fgenesh1_pm.scaffold_352000002Elongation_FactorppEF1352r2038723681

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