SRGD
Splicing Related Gene Database
  Enter DB BLAST Arabidopsis Manuscripts Methods

Arabidopsis snRNAs

Gene GeneID Chr str From To len eVal Similarity GenBank
atU5-6 At1g04475 1 - 1215831 1215730 102 2.00E-35 1 - 102, 95% 22293589
atU1-5 At1g08115 1 - 2538238 2538073 166 1.00E-46 1 - 166, 89% 22293581
atU2-11 At1g09805/09895 1 - 3180736 3180547 190 8.00E-85 1 - 190, 95%
atU4-6 At1g11886 1 - 4007020 4006867 154 1.00E-70 1 - 154, 96% 22293587
atU1-10 At1g11884 1 - 4007396 4007236 161 1.00E-18 4 - 61, 93%;80 - 166, 88%
atU2-14 At1g14165 1 + 4842274 4842469 196 3.00E-81 1 - 196, 94% 22293585
atU2-1 At1g16825 1 + 5758381 5758575 195 2.00E-88 1 - 196, 96%
atU6atac2 At1g21395 1 - 7491489 7491378 112 5.00E-20 1 - 65, 95%;81 - 110, 93%
atU5-5 At1g24105/24095 1 - 8525204 8525103 102 2.00E-35 1 - 102, 95% 22293591
atU1-14p At1g35354 1 + 12986822 12986908 87 1.00E-06 10 - 60, 88%;84 - 118, 88%
atU4-10 At1g35356 1 + 12987189 12987313 125 3.00E-34 1 - 124, 90%
atU4-4 At1g49242/49235 1 - 18222354 18222201 154 2.00E-75 1 - 154, 98% 22293588
atU6-8p At1g52605 1 + 19596398 19596476 96 2.00E-19 4 - 99, 87%
atU6-9p At1g53465 1 - 19960538 19960485 54 9.00E-09 21 - 74, 88%
atU12*$ At1g61275 1 + 22606785 22606960 176 1.00E-95 1 - 176, 100% 22293600
atU5-2 At1g65115 1 + 24194482 24194586 105 1.00E-39 1 - 105, 96%
atU4-11p At1g68395 1 + 25647322 25647396 75 9.00E-07 18 - 37, 100%; 60 - 102, 90%
atU5-3 At1g70185 1 + 26433396 26433497 102 7.00E-38 1 - 102, 96% 22293590
atU5-12 At1g71355 1 + 26895255 26895298 44 2.00E-10 20 - 64, 95%
atU5-9 At1g79545 1 - 29928543 29928447 97 1.00E-20 5 - 101, 89%
atU4-9 At1g79965 1 + 30086031 30086168 138 9.00E-47 18 - 154, 92%
atU2-10 At2g02938 2 + 849777 849972 196 3.00E-93 1 - 196, 96% 22293586
atU2-10b/12 At2g02940 2 + 852859 853054 196 3.00E-93 1 - 196, 96%
atU6-7 At2g15532 2 + 6784793 6784869 77 7.00E-25 4 - 80, 93%
atU2-13 At2g20405 2 + 8809169 8809364 196 3.00E-81 1 - 196, 94% 22293584
atU1-7 At3g05672 3 + 1657766 1657928 163 4.00E-40 4 - 166, 87% 22293580
atU1-6 At3g05695 3 + 1681815 1681977 163 4.00E-40 4 - 166, 87%
atU4.2 At3g06900 3 - 2178343 2178190 154 2.00E-75 1 - 154, 98% 17674
atU6.26 At3g13855 3 + 4561111 4561212 102 2.00E-49 1 - 102, 99% 16517
atU6.1* At3g14735 3 + 4951596 4951697 102 1.00E-51 1 - 102, 100% 16516
atU5-8 At3g25445 3 - 9227212 9227116 97 1.00E-20 5 - 101, 89%
atU2-18p At3g26815 3 + 9881236 9881303 68 2.00E-14 1 - 68, 89%
atU6-10p At3g45705 3 + 16792802 16792888 87 2.00E-06 1 - 46, 89%;62 - 100, 89%
atU5-4 At3g55645 3 + 20653843 20653947 105 3.00E-37 1 - 105, 95%
atU5.1b At3g55855 3 - 20736881 20736780 102 7.00E-38 1 - 102, 96% 22293592
atU5.1* At3g55865 3 - 20740607 20740503 105 6.00E-35 1 - 105, 94% 17676
atU2.6 At3g56705 3 + 21015472 21015667 196 1.00E-83 1 - 196, 94% 17665
atU2.4 At3g56825 3 - 21052994 21052800 195 5.00E-86 1 - 196, 95% 17663
atU2.2* At3g57645 3 + 21357718 21357913 196 1.00E-107 1 - 196, 100% 17661
atU2.3 At3g57765 3 - 21408595 21408400 196 1.00E-95 1 - 196, 97% 17662
atU2.9 At4g01885 4 + 815273 815466 194 2.00E-82 1 - 194, 94% 17667
atU5-7 At4g02535 4 - 1114629 1114528 102 1.00E-30 2 - 103, 93%
atU6-4 At4g03375 4 - 1483121 1483020 102 1.00E-51 1 - 102, 100%
atU4atac At4g16065 4 + 9096374 9096532 159 N/A N/A
atU1-11p At4g16645 4 + 9370786 9370841 56 7.00E-17 4 - 59, 94%
atU1-2 At4g23415 4 + 12225621 12225786 166 1.00E-58 1 - 166, 92% 22293582
atU1-12p At4g23565 4 - 12298871 12298802 70 1.00E-15 94 - 163, 90%
atU6-3 At4g27595 4 + 13782215 13782316 102 1.00E-51 1 - 102, 100%
atU6-5 At4g33085 4 - 15965258 15965158 101 8.00E-37 1 - 101, 94%
atU6-6 At4g35225 4 + 16754836 16754931 96 1.00E-32 1 - 102, 93%
atU2.5 At5g09585 5 + 2975013 2975208 196 7.00E-79 1 - 196, 93% 17664
atU6-11p At5g11085 5 - 3522167 3522143 25 9.00E-06 1 - 25, 100%
atU2-17 At5g14545 5 - 4690105 4690008 98 3.00E-44 1 - 98, 97%
atU5-10 At5g14547 5 - 4690412 4690370 43 3.00E-12 24 - 67, 97%
atU4-5 At5g25776 5 - 8972618 8972465 154 1.00E-70 1 - 154, 96%
atU1-4 At5g25774 5 - 8972971 8972807 165 2.00E-51 1 - 166, 90% 22293583
atU4-8 At5g26996 5 - 9494230 9494081 150 7.00E-66 1 - 150, 96%
atU1-9 At5g26694 5 - 9494594 9494430 165 1.00E-27 1 - 166, 84%
atU1-8 At5g27764 5 + 9832576 9832740 165 1.00E-39 1 - 166, 87%
atU4-7 At5g27766 5 + 9832934 9833083 150 7.00E-66 1 - 150, 96%
atU6atac*$ At5g40395 5 - 16183534 16183413 122 1.00E-63 1 - 122, 100%
atU6.29 At5g46315 5 + 18804616 18804717 102 2.00E-49 1 - 102, 99% 16518
atU4.1* At5g49056 5 - 19902970 19902817 154 4.00E-80 1 - 154, 99% 17673
atU1a* At5g49054 5 - 19903323 19903158 166 1.00E-89 1 - 166, 100% 17660
atU4.3p At5g49526 5 - 20112072 20112030 43 2.00E-11 15 - 57, 95% 17675
atU1-13p At5g49524 5 - 20112431 20112275 157 2.00E-14 4 - 50, 91%;91 - 166, 88%
atU1-3 At5g51675 5 + 21013986 21014149 164 4.00E-55 3 - 166, 91%
atU5-13 At5g53745 5 - 21829988 21829943 46 3.00E-09 24 - 70, 93%
atU5-11 At5g54065 5 - 21957066 21957023 44 2.00E-10 20 - 64, 95%
atU2-16 At5g57835 5 - 23448717 23448522 196 2.00E-67 1 - 196, 92%
atU2.7 At5g61455 5 - 24730829 24730634 196 5.00E-86 1 - 196, 95% 17666
atU2-15 At5g62415 5 + 25083790 25083985 196 4.00E-74 1 - 196, 92%
atU6-2 At5g62995 5 + 25296825 25296926 102 1.00E-51 1 - 102, 100%
atU2-8 At5g67555 5 + 26966884 26967079 196 5.00E-86 1 - 196, 95%
* used as query sequence.

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