TE nest: Annotation and Display of Nested Transposable Elements

TE nest: Annotation and Display of Nested Transposable Elements

Home TE nest svg_ltr Database Submission
Input TE nest annotation file in LTR format Instructions
Email address for result files (REQUIRED).

Submit for TE nest display with default options.

- OR -
optimize TE nest display with choices below.


or upload sequence file in LTR format:

Display Partial Area: Instructions
   Start:     End: 
  Show Partial Regions Cut by Display Window
SVG Display Options
Instructions
Display Options:
Show Paired LTR Retrotransposon Insertions
Show Solo LTRs
Show Whole non-LTR Transposons
Show Fragmented TE Insertions

White Out Options:
Show Unidentified Areas Within TEs as White Regions

Legend Options:
Amount of TEs Listed Across (Horizontally) in Legend
Length in Kb of Scale Bar
Number of Vertical Tic Marks in Scale Bar
 Coordinate Options:

Coordinates:
 Off
TE Based
Sequence Based
     Paired LTR Retrotransposon Coordinates
     Solo LTR Coordinates
     non-LTR Transposon Coordinates
     Fragmented TE Coordinates

Time Since Insertion:
Million Years Ago
Base Pair Substitution Rate
  Gene Annotation:
  svg_ltr can also display gene and psudo-gene annotations. Please see the instructions to learn how to use this feature.

   Clicking the submit button will send you a svg display. Display results will be emailed to the address entered above.
   You must use Firefox version 1.5 or later to view the SVG output.
Brent A. Kronmiller, 2006 bak@iastate.edu.
Brent's homepage: bak
Wiselab homepage: wiselab