a program for Multi-query Sequence Blast output examination
MuSeqBox examines BLAST output, extracts the informative parameters of BLAST hits, and saves them in tabular form. The program can further analyze hit tables to produce subsets of BLAST hits according to user-specified criteria. In particular, BLASTX output may be further analyzed to indicate queries that might potentially be alternatively spliced transcripts (e.g., an extra large segment of insertion or deletion), full-length coding sequences, or contain repeat structures.
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