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MuSeqBox - a program for Multi-query Sequence Blast output examination

Select one of our BLAST output files:    Display hits:

   Display HSPs:

   Print format:

     
Upload your own BLAST output file (click here for non-GenBank formatted input )
     
      Specify length of Query/Subject ID columns:
  Select queries based on the following criteria:
QLen HLen SLen
CovQ % CovS % pid %
Gaps Score Eval
Note: multiple specifications are combined with the logical AND.
  Select queries that are globally highly similar to matching subjects:
 Parameters required:   Pid >=    mao <=    scv >= 
  Select queries that potentially encode full-length coding sequences:
 Parameters required:  ( v5s <=  OR v5q <=  )  ( v3s <=  OR v3q <=  )   scv >=    qcv >= 
  Select queries that represent potential alternatively spliced transcripts:

 Parameters required:

   indel >=    type 
  Select queries that may contain repeats or align to subject sequences containing repeats:
 Parameters required:   rps >=    src
Send the (text format) output to this email address: 
     Note: If no options are selected, the top 3 BLAST hits (if any) will be displayed for all queries.
Any comments, please contact   vbrendel@iastate.edu 
 
BCB @ ISU MuSeqBox Download Help Tutorial References Contact