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Glycine max BAC/Scaffold sequences ?  Enter ID & coordinates above and click "Go", or select a BAC ID below.

Genome / Gene Models

Scaffolds as well as BACs and BAC-sized sequences (>10,000 bp) displayed at GxGDB are from JGI (Glyma0) and GenBank. For more information see Data & Methods. Gene models are from Glyma0.1b. More about the genome...

Alignments to Genome

GxGDB displays high quality spliced alignments for EST, cDNA, PUT, and model species proteins. The current alignment database version is GMGDB163. For more information see Data & Methods. More about alignments...


Search or download any sequence from GxGDB using Search / Download links at left. Complete datasets can also be downloaded from the GxGDB Download page or by ftp. More about search / download...

Note: sequences displayed here may not reflect the latest Glycine max sequence count at PlantGDB, which can be viewed on our download page.


Sequence analysis tools accessed from the Genome Context View menu use the current genomic region as input. Or, to access the same tools without a genomic context, use GxGDB left menubar Tools links. More about tools...

Community Annotation

Help annotate the Glycine max genome using our yrGATE gene structure annotation tool (see Overview), aided by GAEVAL tables that flag problematic gene models. Video demo: QuickTime   Flash  

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Custom Track Display

Distributed Annotation Service (DAS) (see Overview) is available for displaying remotely served genome alignments at GxGDB, as well as for displaying selected GxGDB tracks on a different genome browser (e.g. Ensembl, GBrowse). How to use DAS...

Additional custom track display features are under development.

Annotated protein alignments

Annotated Protein Alignments: A searchable table of splice-aligned, annotated protein models. TBD.


Genome browser video demo: QuickTime Flash 

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For help pages and tutorials focusing on genome browser features and gene annotation, see side bar.

GxGDB is being developed as a part of our NSF-funded project "Cyberinfrastructure for (Comparative) Plant Genome Research Through PlantGDB" (PI: Volker Brendel). The purpose of this resource is to provide a convenient sequence-centered genome view for Glycine max, with a narrow focus on gene structure annotation.

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