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AtGDB encompasses primary sequence data obtained from GenBank, including the most current gss and BAC assembly and annotation, EST and cDNA sequences, and protein sequences derived from the annotated genes. Arabidopsis thaliana genome assemblies refer to the pseudo-chromosome tiling of individual genomic sequence fragments obtained from the listed assembly sources. The mapping of cDNA and EST sequences onto the genome as well as interpretations of the overall data are based on our own spliced alignment results.

The genome assembly is still being refined and completed. AtGDB attempts to remain synchronized with the most recent release of the genome assembly and annotations.

For descriptions of the available downloads, go here.

NameLast modified dateFile Size
ATGDB165.sql.bz2May 16 16:39339.12 MB
ATcdna165.bz2May 16 16:3426.8 MB
ATest165.bz2May 16 15:42104.71 MB
ATgenome.bz2May 11 200732.23 MB
ATpep.bz2May 11 20077.64 MB
ATprobe.bz2May 11 20072.62 MB
ATput163.bz2Apr 14 11:4829.59 MB
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© 2006 Shannon D. Schlueter

AtGDB

PlantGDB

MaizeGDB

NSF Plant Genome Research

Brendel Group

Plant Sciences Institute

Iowa State University