ASIP Selection


Alternative splicing visualization tool...

Enter DB Tools Tutorials Publications Methods Download Contacts

Usage of ASIP Tables and Functions

Function list:

Example search result

To see if the maize TUG (or an Arabidopsis gene model) has been associated with a case of intron retention in the homologous genes in other plant species (maize, Arabidopsis, rice), choose to search "Query" (or "AtModel"), input the query name, e.g. ZMtuc03-04-07.21801 (or At gene model) and search the "Conserved Intron Retention" table. The results for the ZMtuc03-04-07.21801 search are shown below:

Example search result

Group by - merge all rows having the same entry in the chosen column>. Only the first row will be shown after merging. A "count" column will be added to indicate how many rows have been merged. Clicking the numbers in the "count" column will expand the merged rows into individual rows and highlight them. The whole table will be sorted according to the "Group by" column. Example:

(1) Before grouping: There are 140 entries in the table. Many queries have multiple rows corresponding to alignments of different rice BACs:

Example unsorted table

(2) Grouping by Query: Select "Group by Query", click "Do!".

How to select a grouping option

(3) After grouping:

Example of group by query results

(4) Expand group:

How to expand a group

Sort by - order rows according to the chosen column. If the column contains all numbers, sorting will be in an increasing numeric order. If the column contains characters other than numbers, sorting will be in increasing alphabetic order. Descending order is not available at this moment.

Show only - change the number of rows shown in each page. Default is to show only 30 rows in each page, but the value can be set to show 60, 120, or all rows.

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!