PlantGDB

ASIP Selection

ASIP Home

Alternative splicing visualization tool...

Current Data in ASIP

Type	Species	Data Set from common or individual alignments
Data jointly contributed by Medicago Genome Sequencing project and PlantGDB June 30, 2007	Medicago Mt1.0 Non-redundant genes	Alternative Donor site; GeneSeqer GMAP Alternative Acceptor site; GeneSeqer GMAP Alternative Position (both site); GeneSeqer GMAP Exon Skipping; GeneSeqer GMAP Intron Retention; GeneSeqer GMAP
	Lotus Phase 3 BACs	Alternative Donor site; GeneSeqer GMAP Alternative Acceptor site; GeneSeqer GMAP Alternative Position (both site); GeneSeqer GMAP Exon Skipping; GeneSeqer GMAP Intron Retention; GeneSeqer GMAP
	Arabidopsis TAIR-V6	Alternative Donor site; GeneSeqer GMAP Alternative Acceptor site; GeneSeqer GMAP Alternative Position (both site); GeneSeqer GMAP Exon Skipping; GeneSeqer GMAP Intron Retention; GeneSeqer GMAP
	Rice TIGR-V4 Japonica subspecies only	Alternative Donor site; GeneSeqer GMAP Alternative Acceptor site; GeneSeqer GMAP Alternative Position (both site); GeneSeqer GMAP Exon Skipping; GeneSeqer GMAP Intron Retention; GeneSeqer GMAP
	Medicago & Lotus Conserved AS events	Alternative Donor site; GeneSeqer GMAP Alternative Acceptor site; GeneSeqer GMAP Alternative Position (both site); GeneSeqer GMAP Exon Skipping; GeneSeqer GMAP Intron Retention; GeneSeqer GMAP
	Medicago & Legumes Cross species EST identified AS events	Alternative Donor site; Lotus Soybean Others Alternative Acceptor site; Lotus Soybean Others Alternative Position; Lotus Soybean Others Exon Skipping; Lotus Soybean Others Intron Retention; Lotus Soybean Others
Sept. 1, 2006	Arabidopsis TAIR-V6 GenBank release 152	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
Sept. 1, 2006	Rice TIGR-V4 GenBank release 151	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
Old data described in Wang and Brendel, PNAS, 2006, available online.

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!