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Available data (AtTAG1/RiceTAG1) for download
1. List and annotation of alternatively spliced genes
Arabidopsis: text, html
Rice: text, html
Note:The total numbers here are slightly different than the numbers in our PNAS paper, due to the ambiguity of assinging gene models to EST/cDNA contigs covering multiple annotated genes. We will update these lists again using newer version of gene annotation.
2. Intron, exon, and junction* sequences
Arabidopsis: introns, exons, junctions*
Rice: introns, exons, junctions*
* Note: Junction sequences are 30bp upstream and downstream exon sequences surrounding each intron.
3. Raw GeneSeqer alignment, MySQL database dump.
Arabidopsis: mysql database, Raw GeneSeqer alignment.
Rice: mysql database.
Both: Table and columns description.
4. Other type of data are available upon requestusing.
5. The tool we developped for identification of AS events from EST alignments (ASpipe) is available through Sourceforge.
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