Search
 for  
 In 
     ?

ASIP Selection

ASIP Home

Alternative splicing visualization tool...

Enter DB Tools Tutorials Publications Methods Download Contacts
  • NewASIP Publication: BMC plant biology 2008 - Cross-Species EST Alignments Reveal Novel and Conserved Alternative Splicing Events in Legumes
  • ASIP updated @ 6/30/2007; Legumes come to ASIP, thanks to the Medicago Genome Sequencing Project.
    • Medicago and Lotus data identified from same-species and cross-species EST/cDNAs.
    • New Arabidopsis and rice data set.
    • Common alignments from GeneSeqer and GMAP programs.
    • Easy comparison between different versions of databases.
    • Highlighted AS events in GeneSeqer text alignment.
  • Enter database - Browse the alternative splicing events in Arabidopsis and rice. Data from other species will come soon.
  • Tools - Search against intron, exon and junction sequences in Arabidopsis and rice.
  • Methods - Brief description of pipeline.
  • Download - Access all raw data, including Genome sequences, EST/cDNA sequences, Raw alignment, and MySQL database.
  • Publications
    • PNAS 2006 - Genome-wide comparative analysis of alternative transcripts in plants.
    • BMC plant biology 2008 -Cross-Species EST Alignments Reveal Novel and Conserved Alternative Splicing Events in Legumes
    • Conference Talk - ISMB2005 - Session: Gene Regulation and MicroRNA

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!