Welcome to plantgdb.org!Tools and resources for plant genomics
If you experience issues using our site with Internet Explorer, please see our Web Browser Support page.
Public Plant Sequence Release 187 is current.Species-parsed Viridiplantae sequences from GenBank and UniProt.
Sequence AssembliesPlantGDB-assembled unique transcripts (PUT) and Genome Survey Sequence assemblies (GSS).
ToolsOnline tools for pattern matching, sequence query, and spliced alignment.
More about Tools...
|BioExtract Server||An online service for creating and customizing bioinformatics workflows|
|BLAST||An NCBI-BLAST service with , species-parsed plant databases and batch query capabilities|
|DAS||Distributed Annotation System (DAS) allows remote genome browsers to access PlantGDB annotations|
|FindPrimers||A tool for designing PCR primers for analyzing maize Ds transposon insertions.|
|GeneSeqer Parallel GeneSeqer||A tool for generating gene models based on transcript - genome spliced alignment|
|GenomeThreader||A tool for generating gene models based on transcript or protein:genome spliced alignment|
|MuSeqBox||A program that tabulates BLAST output and filter hits according to user-specified criteria|
|PatternSearch||A tool for querying short sequences (e.g. PCR fragments) for genome homology|
|ProbeMatch||Query your sequence against microarray probe sequences|
|TableMaker||Search PlantGDB's Plant Sequence database with an easy-to use GUI interface.|
|TE_Nest||An annotation and visualization tool for the identification transposable elements in genomic sequence|
|TracEmbler||Perform chromosome walks based on a query sequence, using trace sequences from NCBI's Trace Archive.|
|yrGATE||A tool for community annotation of genomic sequence, used in conjunction with the xGDB genome browsers|
Genome BrowsersGenome browsers for emerging & completed plant genomes.
Video Tutorial (6 min): View Quicktime; View Flash
Community AnnotationTools and databases for gene structure annotation.
Video Tutorial (5 min): View Quicktime; View Flash